Lars Hestbjerg Hansen
Professor
Microbial Ecology and Biotechnology
Thorvaldsensvej 40
1871 Frederiksberg C
- 2024
- E-pub ahead of print
Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data
Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.Research output: Contribution to journal › Review › Research › peer-review
- Published
Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems
Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
A novel Queuovirinae lineage of Pseudomonas aeruginosa phages encode dPreQ0 DNA modifications with a single GA motif that provide restriction and CRISPR Cas9 protection in vitro
Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Cui, L., Dedon, P., Neve, H., Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Nucleic Acids Research. 51, 16, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cessation of grazing causes biodiversity loss and homogenization of soil food webs
Schrama, M., Quist, C. W., Arjen De Groot, G., Cieraad, E., Ashworth, D., Laros, I., Hansen, Lars Hestbjerg, Leff, J., Fierer, N. & Bardgett, R. D., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2011, 12 p., 20231345.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software
Nielsen, Tue Kjærgaard, Forero Junco, Laura Milena, Kot, Witold, Moineau, S., Hansen, Lars Hestbjerg & Riber, Leise, 2023, In: Molecular Ecology. 32, 6, p. 1236-1247 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fecal virome transfer improves proliferation of commensal gut Akkermansia muciniphila and unexpectedly enhances the fertility rate in laboratory mice
Rasmussen, Torben Sølbeck, Mentzel, Caroline M. Junker, Danielsen, M. R., Jakobsen, Rasmus Riemer, Zachariassen, L. S. F., Castro Mejia, J. L., Brunse, Anders, Hansen, Lars Hestbjerg, Hansen, Camilla Hartmann Friis, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 2023, In: Gut Microbes. 15, 1, 21 p., 2208504.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Four novel Curtobacterium phages isolated from environmental samples
Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Rothgardt, M. M., Russel, A. M., Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Archives of Virology. 168, 3Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids
Nielsen, Tue Kjærgaard, Winther-Have, Caroline Sophie W, Thomsen, Iben Margrete, Jackson, R. W., Rabiey, M., Hennessy, Rosanna Catherine, Bak, Frederik, Kot, Witold, Nicolaisen, Mette Haubjerg, Carstens, Alexander Byth & Hansen, Lars Hestbjerg, 2023, In: Infection, Genetics and Evolution. 113, 10 p., 105486.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition
Hansen, Søren Blikdal, Bozzi, D., Mak, Sarah Siu Tze, Clausen, C. G., Nielsen, Tue Kjærgaard, Kodama, M., Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2023, In: Genomics. 115, 3, 9 p., 110629.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pheno- and Genotyping of Three Novel Bacteriophage Genera That Target a Wheat Phyllosphere Sphingomonas Genus
Riber, Leise, Carstens, Alexander Byth, Dougherty, Peter Erdmann, Roy, Chayan, Willenbücher, K., Hille, F., Franz, C. M. A. P. & Hansen, Lars Hestbjerg, 2023, In: Microorganisms. 11, 7, 17 p., 1831.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pruning Wound Protection Products Induce Alterations in the Wood Mycobiome Profile of Grapevines
Del Frari, G., Aggerbeck, M. R., Gobbi, Alex, Ingrà, C., Volpi, L., Nascimento, T., Ferrandino, A., Hansen, Lars Hestbjerg & Ferreira, R. B., 2023, In: Journal of Fungi. 9, 4, 20 p., 488.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity
Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Three novel Erwinia billingiae phages isolated from organic waste represent three new genera
Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Kot, Witold & Hansen, Lars Hestbjerg, 2023, In: Archives of Virology. 168, 7 p., 71.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria
Dougherty, Peter Erdmann, Nielsen, Tue Kjærgaard, Riber, Leise, Lading, H. H., Forero Junco, Laura Milena, Kot, Witold, Raaijmakers, J. M. & Hansen, Lars Hestbjerg, 2023, In: ISME Journal. 17, 12, p. 2415-2425Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
A global microbiome survey of vineyard soils highlights the microbial dimension of viticultural terroirs
Gobbi, Alex, Acedo, A., Imam, N., Santini, R. G., Ortiz-Alvarez, R., Ellegaard-Jensen, L., Belda, I. & Hansen, Lars Hestbjerg, 2022, In: Communications Biology . 5, 9 p., 241.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibiotic resistance genes are differentially mobilized according to resistance mechanism
Nielsen, Tue Kjærgaard, Browne, Patrick Denis & Hansen, Lars Hestbjerg, 2022, In: GigaScience. 11, 17 p., giac072.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue
Schostag, M. D., Gobbi, Alex, Fini, M. N., Ellegaard-Jensen, L., Aamand, J., Hansen, Lars Hestbjerg, Muff, J. & Albers, C. N., 2022, In: Water Research. 216, 12 p., 118352.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence and Benzophenone-3 Mineralisation Potential of Rhodococcus sp. USK10, A Bacterium Isolated from Riverbank Sediment
Martin, J. D., Krüger, U. S., Zervas, A., Schostag, M., Nielsen, Tue Kjærgaard, Aamand, J., Hansen, Lars Hestbjerg & Ellegaard-Jensen, L., 2022, In: Applied Microbiology. 2, p. 104-112 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Critical Assessment of Metagenome Interpretation: the second round of challenges
Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, , 2022, In: Nature Methods. 19, 4, p. 429-440Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of gluten-free diet and antibiotics on murine gut microbiota and immune response to tetanus vaccination
Kihl, Pernille, Krych, Lukasz, Deng, Ling, Hansen, Lars Hestbjerg, Buschard, K., Skov, Søren, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: Plos One. 17, 4, 21 p., e0266719.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic, Phenotypic and Metabolic Diversity of Yeasts From Wheat Flag Leaves
Gouka, L., Vogels, C., Hansen, Lars Hestbjerg, Raaijmakers, J. M. & Cordovez, V., 2022, In: Frontiers in Plant Science. 13, 13 p., 908628.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gut Microbiome and Its Cofactors Are Linked to Lipoprotein Distribution Profiles
Castro-Mejía, J. L., Khakimov, Bekzod, Aru, Violetta, Lind, M. V., Ahlmann, Eva Garne, Paulová, P., Tavakkoli, E., Hansen, Lars Hestbjerg, Smilde, Age Klaas, Holm, L., Engelsen, Søren Balling & Nielsen, Dennis Sandris, 2022, In: Microorganisms. 10, 11, 2156.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-Term Safety Following Faecal Microbiota Transplantation as a Treatment for Recurrent Clostridioides difficile Infection Compared with Patients Treated with a Fixed Bacterial Mixture: Results from a Retrospective Cohort Study
Cold, F., Svensson, C. K., Petersen, Andreas Munk, Hansen, Lars Hestbjerg & Helms, Morten, 2022, In: Cells. 11, 3, 18 p., 435.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Machine learning and deep learning applications in microbiome research
Hernandez Medina, Ricardo, Kutuzova, Svetlana, Nielsen, Knud Nor, Johansen, Joachim, Hansen, Lars Hestbjerg, Nielsen, Mads & Rasmussen, Simon, 2022, In: ISME Communications. 2, 7 p., 98.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 4930
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Research output: Contribution to conference › Poster › Research
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Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria
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