Nikos Hatzakis

Nikos Hatzakis

Professor

ORCID: 0000-0003-4202-0328

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  1. POLY 391-Assembly strategies for enzyme immobilization

    Lambermon, M., Hendriks, L. J., Schoffelen, S., Vos, M., Hatzakis, Nikos, Carette, N., Rowan, A. E., Cornelissen, J., Michon, T., Sommerdijk, N. A. J. M. & van Hest, J. C. M., 2006, In: ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.

    Research output: Contribution to journal › Conference abstract in journal › Research

  2. Published

    Synergy between membrane-curvature and liquid ordered phase-state effectively sorts amphiphilic protein-anchoring motifs

    Larsen, J., Jensen, M. B., Hatzakis, Nikos, Bhatia, V. K. & Stamou, Dimitrios, 2011, In: European Biophysics Journal. 40, Suppl 1, p. S200 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  3. Published

    Observation of Inhomogeneity in the Lipid Composition of Individual Nanoscale Liposomes

    Larsen, J., Hatzakis, Nikos, Elizondo, E., Cabrera, I., Veciana, J., Ventosa, N. & Stamou, Dimitrios, 2012, In: Biophysical Journal. p. 426a 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  4. Published

    Observation of inhomogeneity in the lipid composition of individual nanoscale liposomes

    Larsen, J., Hatzakis, Nikos & Stamou, Dimitrios, 20 Jul 2011, In: Journal of the American Chemical Society. 133, 28, p. 10685-10687 3 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  5. Published

    Lipid-Anchored Ras is Sorted by Membrane Curvature Both In Vitro and in Living Cells

    Larsen, J., Jensen, M. B., Bhatia, V. K., Pedersen, S. L., Bjornholm, T., Jensen, Knud Jørgen, Kohnke, M., Abankwa, D., Alexandrov, K., Hatzakis, Nikos & Stamou, Dimitrios, 2013, In: Biophysical Journal. 104, 2, 1 p., 500-Pos.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  6. Published

    Membrane Curvature and Lipid Composition Synergize To Regulate N-Ras Anchor Recruitment

    Larsen, J. B., Kennard, C., Pedersen, S. L., Jensen, Knud Jørgen, Uline, M. J., Hatzakis, Nikos & Stamou, Dimitrios, 2017, In: Biophysical Journal. 113, 6, p. 1269-1279 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    How Membrane Geometry Regulates Protein Sorting Independently of Mean Curvature

    Larsen, J. B., Rosholm, K. R., Kennard, C., Pedersen, S. L., Munch, H. K., Tkach, Vadym, Sakon, J. J., Bjornholm, T., Weninger, K. R., Bendix, Poul Martin, Jensen, Knud Jørgen, Hatzakis, Nikos, Uline, M. J. & Stamou, Dimitrios, 2020, In: ACS Central Science. 6, 7, p. 1159-1168 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    N-RAS lipid anchor adsorption to membranes as a function of lipid composition and curvature

    Larsen, J. B., Kennard, C., Pedersen, S. L., Jensen, Knud Jørgen, Hatzakis, Nikos, Uline, M. J. & Stamou, Dimitrios, 2016, In: Biophysical Society. Annual Meeting. Abstracts. 110, 3, p. 579A 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  9. Published

    Membrane curvature enables N-Ras lipid anchor sorting to liquid-ordered membrane phases

    Larsen, J. B., Jensen, M. B., Bhatia, V. K., Pedersen, S. L., Bjørnholm, T., Iversen, L., Uline, M., Szleifer, I., Jensen, Knud Jørgen, Hatzakis, Nikos & Stamou, Dimitrios, 2015, In: Nature Chemical Biology. 11, 3, p. 192-194 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Single molecule activity measurements of cytochrome P450 oxidoreductase reveal the existence of two discrete functional states

    Laursen, Tomas, Singha, A., Rantzau, N., Tutkus, M., Borch-Jensen, J., Hedegård, Per, Stamou, Dimitrios, Møller, Birger Lindberg & Hatzakis, Nikos, 2014, In: ACS chemical biology. 9, 3, p. 630-634 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Characterization of a dynamic metabolon producing the defense compound dhurrin in sorghum

    Laursen, Tomas, Borch-Jensen, J., Baden, C. K., Bavishi, K., Torta, F., Martens, Helle Jakobe, Silvestro, D., Hatzakis, Nikos, Wenk, M. R., Dafforn, T. R., Olsen, C. E., Motawie, Mohammed Saddik, Hamberger, B. R., Møller, Birger Lindberg & Bassard, J. A., 2016, In: Science (New York, N.Y.). 354, 6314, p. 890-893 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

    Lerner, E., Barth, A., Hendrix, J., Ambrose, B., Birkedal, V., Blanchard, S. C., Börner, R., Chung, H. S., Cordes, T., Craggs, T. D., Deniz, A. A., Diao, J., Fei, J., Gonzalez, R. L., Gopich, I. V., Ha, T., Hanke, C. A., Haran, G., Hatzakis, N. S., Hohng, S. & 27 others, Hong, S. C., Hugel, T., Ingargiola, A., Joo, C., Kapanidis, A. N., Kim, H. D., Laurence, T., Lee, N. K., Lee, T. H., Lemke, E. A., Margeat, E., Michaelis, J., Michalet, X., Myong, S., Nettels, D., Peulen, T. O., Ploetz, E., Razvag, Y., Robb, N. C., Schuler, B., Soleimaninejad, H., Tang, C., Vafabakhsh, R., Lamb, D. C., Seidel, C. A. M., Weiss, S. & Boudker, O., 2021, In: eLife. 10, 69 p., e60416.

    Research output: Contribution to journal › Review › Research › peer-review

  13. Published

    Single enzyme experiments reveal a long-lifetime proton leak state in a heme-copper oxidase

    Li, M., Jørgensen, S. K., McMillan, D. G. G., Krzemiński, Ł., Daskalakis, N. N., Partanen, R. H., Tutkus, M., Tuma, R., Stamou, Dimitrios, Hatzakis, Nikos & Jeuken, L. J. C., 2015, In: Journal of the American Chemical Society. 137, 51, p. 16055-16063 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Effects of membrane curvature and pH on proton pumping activity of single cytochrome bo3 enzymes

    Li, M., Khan, S., Rong, H., Tuma, R., Hatzakis, Nikos & Jeuken, L. J. C., 2017, In: Biochimica et Biophysica Acta - Bioenergetics. 1858, 9, p. 763-770

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Single-particle combinatorial multiplexed liposome fusion mediated by DNA

    Malle, M., Loffler, P., Bohr, S. S., Sletfjerding, M., Risgaard, N., Jensen, S., Zhang, Min, Hedegård, Per, Vogel, S. & Hatzakis, Nikos, 2022, In: Nature Chemistry. 14, 5, p. 558–565 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Single Liposome Measurements for the Study of Proton-Pumping Membrane Enzymes Using Electrochemistry and Fluorescent Microscopy

    Mazurenko, I., Hatzakis, Nikos & Jeuken, L. J. C., 2019, In: Journal of Visualized Experiments. 144

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    A systematic analysis of regression models for protein engineering

    Michael, Richard, Kæstel-Hansen, Jacob, Groth, Peter Mørch, Bartels, S., Salomon, J., Tian, P., Hatzakis, Nikos & Boomsma, Wouter, 2024, In: PLOS Computational Biology. 20, 5 May, 22 p., e1012061.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Physical and barrier changes in gastrointestinal mucus induced by the permeation enhancer sodium 8-[(2-hydroxybenzoyl)amino]octanoate (SNAC)

    Mortensen, Janni Støvring, Bohr, S. S. R., Rønholt, Stine, Hatzakis, Nikos, Saaby, Lasse & Nielsen, Hanne Mørck, 2022, In: Journal of Controlled Release. 352, p. 163-178 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Neonatal intestinal mucus barrier changes in response to maturity, inflammation, and sodium decanoate supplementation

    Mortensen, Janni Støvring, Bohr, S. S. R., Krog, Lasse Skjoldborg, Bøtker, Johan Peter, Kapousidou, V., Saaby, Lasse, Hatzakis, Nikos, Nielsen, Hanne Mørck, Nguyen, Duc Ninh & Rønholt, Stine, 2024, In: Scientific Reports. 14, 1, 17 p., 7665.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Single-Molecule Study of Thermomyces lanuginosus Lipase in a Detergency Application System Reveals Diffusion Pattern Remodeling by Surfactants and Calcium

    Moses, M. E., Lund, P. M., Bohr, S. S., Iversen, J. F., Kæstel-Hansen, J., Kallenbach, A. S., Iversen, L., Christensen, S. M. & Hatzakis, Nikos, 2021, In: A C S Applied Materials and Interfaces. 13, 28, 9 p., 33704.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Quantification of functional dynamics of membrane proteins reconstituted in nanodiscs membranes by single turnover functional readout

    Moses, M. E., Hedegård, Per & Hatzakis, Nikos, 2016, Single-molecule enzymology: fluorescence-based and high-throughput methods. Spies, M. & Chemla, Y. R. (eds.). Academic Press, p. 227-256 30 p. (Methods in Enzymology, Vol. 581).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  22. Published

    Links of conformational sampling to functional plasticity and clinical phenotypes by single molecule studies

    Moses, M. E., Thodberg, S., Bavishi, K., Eiersholt, S., Li, D., Stamou, Dimitrios, Møller, Birger Lindberg, Laursen, Tomas & Hatzakis, Nikos, 2016, In: Biophysical Society. Annual Meeting. Abstracts. 110, 3, p. 397A 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  23. Published

    Optically Induced Linking of Protein and Nanoparticles to Gold Surfaces

    Moth-Poulsen, K., Kofod-Hansen, V., S. Kamounah, F., Hatzakis, Nikos, Stamou, Dimitrios, Schaumburg, K. & Christensen, Jørn Bolstad, 2010, In: Bioconjugate Chemistry. 21, p. 1056 1061 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. POLY 553-Biohybrid block copolymer architectures by "click" chemistry

    Opsteen, J. A., Dirks, A. J., van Berkel, S. S., Hatzakis, Nikos, Brinkhuis, R. P., Reijnders, M. E. G. & van Hest, J. C. M., 2006, In: ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.

    Research output: Contribution to journal › Conference abstract in journal › Research

  25. Published

    Single-particle diffusional fingerprinting: A machine-learning framework for quantitative analysis of heterogeneous diffusion

    Pinholt, H. D., Bohr, S. S. R., Iversen, J. F., Boomsma, Wouter & Hatzakis, Nikos, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 31, 7 p., e2104624118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Membrane curvature regulates ligand-specific membrane sorting of GPCRs in living cells

    Rosholm, K. R., Leijnse, Natascha, Mantsiou, A., Tkach, Vadym, Pedersen, S. L., Wirth, V. F., Oddershede, L. B., Jensen, Knud Jørgen, Martinez, Karen Laurence, Hatzakis, Nikos, Bendix, Poul Martin, Callan-Jones, A. & Stamou, Dimitrios, 8 May 2017, In: Nature Chemical Biology. 13, 7, p. 724-729

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Sorting of tN-Ras by Membrane Curvature in Lipid Vesicles and Tubes

    Rosholm, K. R., Larsen, J., Pedersen, S. L., Munch, H. K., Jensen, Knud Jørgen, Hatzakis, Nikos & Stamou, Dimitrios, 2013, In: Biophysical Journal. 104, Supplement 1, p. 549A 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  28. Published

    The dopamine transporter antiports potassium to increase the uptake of dopamine

    Schmidt, S. G., Malle, M. G., Nielsen, A. K., Bohr, S. S., Pugh, Ciara Frances, Nielsen, Jeppe Cederholm, Poulsen, I. H., Rand, Kasper Dyrberg, Hatzakis, Nikos & Loland, Claus Juul, 2022, In: Nature Communications. 13, 1, 12 p., 2446.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Direct Observation of Sophorolipid Micelle Docking in Model Membranes and Cells by Single Particle Studies Reveals Optimal Fusion Conditions

    Singh, P. K., Bohr, S. S. & Hatzakis, Nikos, 2020, In: Biomolecules. 10, 9, 16 p., 1291.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Membrane Curvature Regulates the Localization of G Protein Coupled Receptors and Ras Isoforms

    Stamou, Dimitrios, Rosholm, K. R., Damalas, A., Hatzakis, Nikos, Wirth, V. F., Martinez, Karen Laurence, Leijnse, Natascha, Oddershede, L. B., Bendix, Poul Martin & Pedersen, S. L., 27 Jan 2015, In: Biophysical Journal. 108, 2, p. 95a-96a

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Static and Dynamic Disorder Observed in the Phase Transition Behavior of Individual Small Unilamellar Vesicles

    Stamou, Dimitrios, Bendix, Poul Martin, Wibroe, P. P. & Hatzakis, Nikos, 2011, In: Biophysical Journal. 100, 3 suppl 1, p. 35a 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  32. Published

    Direct Observation of CRISPR-Cas12 Conformational Sampling by SM FRET and Cryo EM Reveals how Conformational Activation Promotes Catalysis and Resetting of the Endonuclease Activity

    Stella, S., Mesa, Pablo, Thomsen, J., Paul, B., Alcon, P., Jensen, S. B., Moses, M. E., Montoya, Guillermo & Hatzakis, Nikos, 7 Feb 2020, In: Biophysical Journal. 118, 3, p. 223A-224A 2 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  33. Published

    Conformational Activation Promotes CRISPR-Cas12a Catalysis and Resetting of the Endonuclease Activity

    Stella, S., Mesa, Pablo, Thomsen, J., Paul, B., Alcón, P., Jensen, S. B., Saligram, B., Moses, M. E., Hatzakis, Nikos & Montoya, Guillermo, 13 Dec 2018, In: Cell. 175, 7, p. 1856-1871.e21 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Interactions of Cell-Penetrating Peptide-Modified Nanoparticles with Cells Evaluated Using Single Particle Tracking

    Streck, S., Bohr, S. S., Birch, D., Rades, Thomas, Hatzakis, Nikos, McDowell, A. & Nielsen, Hanne Mørck, 2021, In: ACS Applied Bio Materials. 4, 4, p. 3155-3165 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    DeepFRET, a software for rapid and automated single-molecule FRET data classification using deep learning

    Thomsen, J., Sletfjerding, M. B., Jensen, S. B., Stella, S., Paul, B., Malle, M. G., Montoya, Guillermo, Petersen, Troels Christian & Hatzakis, Nikos, Nov 2020, In: eLife. 9, 21 p., e60404.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    A large size-selective DNA nanopore with sensing applications

    Thomsen, R. P., Malle, M. G., Okholm, A. H., Krishnan, S., Bohr, S. S., Sørensen, R. S., Ries, O., Vogel, S., Simmel, F. C., Hatzakis, Nikos & Kjems, J., 2019, In: Nature Communications. 10, 1

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Morphological integrity of insulin amyloid-like aggregates depends on preparation methods and post-production treatments

    Thorlaksen, C., Stanciu, A., Neergaard, M. B., Hatzakis, Nikos, Foderà, Vito & Groenning, M., 2022, In: European Journal of Pharmaceutics and Biopharmaceutics. 179, p. 147-155 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    In vitro and in vivo immunogenicity assessment of protein aggregate characteristics

    Thorlaksen, C., Schultz, H. S., Gammelgaard, S. K., Jiskoot, W., Hatzakis, Nikos, Nielsen, F. S., Solberg, H., Foderà, Vito, Bartholdy, C. & Groenning, M., 2023, In: International Journal of Pharmaceutics. 631, 122490.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Probing Activation and Conformational Dynamics of the Vesicle-Reconstituted β2 Adrenergic Receptor at the Single-Molecule Level

    Tutkus, M., Lundgaard, C. V., Veshaguri, S., Tønnesen, A., Hatzakis, Nikos, Rasmussen, Søren Gøgsig Faarup & Stamou, Dimitrios, 2024, In: Journal of Physical Chemistry B. 128, 9, p. 2124–2133 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Single Vesicle Fluorescence-Bleaching Assay for Multi-Parameter Analysis of Proteoliposomes by Total Internal Reflection Fluorescence Microscopy

    Veit, S., Paweletz, L. C., Bohr, S. S., Menon, A. K., Hatzakis, Nikos & Pomorski, Thomas Guenther, 2022, In: ACS applied materials & interfaces. 14, 26, p. 29659−29667 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Resolving active ion transport at the single molecule level for the first time

    Veshaguri, S., Christensen, S. M., Kemmer, G. C., Møller, M. P., Ghale, G., Lohr, C., Christensen, A. L., Justesen, B. H., Jørgensen, I. L., Schiller, J., Hatzakis, Nikos, Grabe, M., Pomorski, Thomas Guenther & Stamou, Dimitrios, 2016, In: Biophysical Journal. 110, 3, p. 179A 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Direct observation of proton pumping by a eukaryotic P-type ATPase

    Veshaguri, S., Christensen, S. F., Kemmer, G. C., Ghale, G., Møller, M. P., Lohr, C., Christensen, A. L., Justesen, B. H., Jørgensen, I. L., Schiller, J., Hatzakis, Nikos, Grabe, M., Pomorski, Thomas Guenther & Stamou, Dimitrios, 2016, In: Science. 351, 6280, p. 1469-1473 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Developing an Assay to Probe Activtion and Conformational Dynamics of beta 2-Adrenergic Receptor on Single Molecule Level

    Veshaguri, S., Tutkus, M., Lundgaard, C. V., Tonnesen, A., Mathiasen, Signe, Jorgensen, S. K., Iversen, L., Hatzakis, Nikos, Rasmussen, Søren Gøgsig Faarup & Stamou, Dimitrios, 2013, In: Biophysical Journal. 104, 2, 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  44. Positional assembly of enzymes in polymersome nanoreactors for cascade reactions

    Vriezema, D. M., Garcia, P. M. L., Oltra, N. S., Hatzakis, Nikos, Kuiper, S. M., Nolte, R. J. M., Rowan, A. E. & van Hest, J. C. M., 2007, In: Angewandte Chemie International Edition. 46, 39, p. 7378-7382 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  45. Published

    Monitoring shifts in the conformation equilibrium of the membrane protein cytochrome P450 reductase (POR) in nanodiscs

    Wadsäter, M. H., Laursen, Tomas, Singha, A., Hatzakis, Nikos, Stamou, Dimitrios, Barker, R., Mortensen, Kell, Feidenhans'l, Robert Krarup, Møller, Birger Lindberg & Cardenas Gomez, M., 2012, In: Journal of Biological Chemistry. 287, 41, p. 34596-34603 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Ultrasmall TPGS-PLGA Hybrid Nanoparticles for Site-Specific Delivery of Antibiotics into Pseudomonas aeruginosa Biofilms in Lungs

    Wan, F., Bohr, S. S. R., Kłodzińska, S. N., Jumaa, H., Huang, Z., Nylander, T., Thygesen, Mikkel Boas, Sørensen, K. K., Jensen, Knud Jørgen, Sternberg, C., Hatzakis, Nikos & Nielsen, Hanne Mørck, 2020, In: ACS Applied Materials and Interfaces. 12, p. 380-389

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Robust Dual Optical Sensor for pH and Dissolved Oxygen

    Wang, L., Jensen, K., Hatzakis, Nikos, Zhang, Min & Sørensen, Thomas Just, 2022, In: ACS Sensors. 7, 5, p. 1506–1513

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Functionalized Gold Nanoclusters Identify Highly Reactive Oxygen Species in Living Organisms

    Xie, Y., Xianyu, Y., Wang, N., Yan, Z., Liu, Y., Zhu, K., Hatzakis, Nikos & Jiang, X., 2018, In: Advanced Functional Materials. 28, 14, 7 p., 1702026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Direct Observation of Anisotropy-Driven Formation of Amyloid Spherulites in Real-time by Super-resolution Microscopy

    Zhang, Min, Pinholt, H., Zhou, X., Bohr, S., Banetta, L., Zaccone, A., Foderà, Vito & Hatzakis, Nikos, 2021, 19 p.

    Research output: Working paper › Preprint › Research

  50. Published

    Direct observation of heterogeneous formation of amyloid spherulites in real-time by super-resolution microscopy

    Zhang, Min, Pinholt, H., Zhou, X., Bohr, S., Banetta, L., Zaccone, A., Foderà, Vito & Hatzakis, Nikos, 2022, In: Communications Biology . 5, 1, 10 p., 850.

    Research output: Contribution to journal › Journal article › Research › peer-review

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