Matthias Mann

Matthias Mann

Professor, head of research, Professor

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    ORCID: 0000-0003-1292-4799

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    1. The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins

      Adachi, J., Kumar, C., Zhang, Y., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In: Genome Biology. 7, 9, p. R80

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Mass-spectrometric exploration of proteome structure and function

      Aebersold, R. & Mann, Matthias, 15 Sep 2016, In: Nature. 537, 7620, p. 347-55 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. UBL3 modification influences protein sorting to small extracellular vesicles

      Ageta, H., Ageta-Ishihara, N., Hitachi, K., Karayel, O., Onouchi, T., Yamaguchi, H., Kahyo, T., Hatanaka, K., Ikegami, K., Yoshioka, Y., Nakamura, K., Kosaka, N., Nakatani, M., Uezumi, A., Ide, T., Tsutsumi, Y., Sugimura, H., Kinoshita, M., Ochiya, T., Mann, M. & 2 others, Setou, M. & Tsuchida, K., 26 Sep 2018, In: Nature Communications. 9, 1, p. 3936

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Circulating Glucagon 1-61 Regulates Blood Glucose by Increasing Insulin Secretion and Hepatic Glucose Production

      Albrechtsen, N. J. W., Kuhre, R. E., Hornburg, D., Jensen, C. Z., Hornum, M., Dirksen, C., Svane, M., Gasbjerg, L. S., Jorgensen, N. B., Gabe, M. N., Balk-Moller, E., Albrechtsen, R., Winther-Sorensen, M., Galsgaard, K. D., Meissner, F., Jorsal, T., Lund, A., Vilsboll, T., Eliasen, R., Bojsen-Moller, K. N. & 9 others, Idorn, T., Deacon, Carolyn F., Knop, Filip Krag, Rosenkilde, Mette, Hartmann, Bolette, Feldt-Rasmussen, Bo, Mann, Matthias, Madsbad, Sten & Holst, Jens Juul, Nov 2017, In: Cell Reports. 21, 6, p. 1452-1460

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Hippocampal disruptions of synaptic and astrocyte metabolism are primary events of early amyloid pathology in the 5xFAD mouse model of Alzheimer's disease

      Andersen, Jens Velde, Skotte, Niels Henning, Christensen, S. K., Polli, F. S., Shabani, M., Markussen, K. H., Haukedal, H., Westi, Emil Winther, Diaz-delCastillo, M., Sun, R. C., Kohlmeier, Kristi Anne, Schousboe, Arne, Gentry, M. S., Tanila, H., Freude, Kristine, Aldana, Blanca, Mann, Matthias & Waagepetersen, Helle S., 2021, In: Cell Death & Disease. 12, 11, 13 p., 954 .

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics

      Angelidis, I., Simon, L. M., Fernandez, I. E., Strunz, M., Mayr, C. H., Greiffo, F. R., Tsitsiridis, G., Ansari, M., Graf, E., Strom, T., Nagendran, M., Desai, T., Eickelberg, O., Mann, Matthias, Theis, F. J. & Schiller, H. B., 27 Feb 2019, In: Nature Communications. 10, 1, p. 963

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Key Features Relevant to Select Antigens and TCR From the MHC-Mismatched Repertoire to Treat Cancer

      Audehm, S., Glaser, M., Pecoraro, M., Bräunlein, E., Mall, S., Klar, R., Effenberger, M., Albers, J., Bianchi, H. D. O., Peper, J., Yusufi, N., Busch, D. H., Stevanović, S., Mann, Matthias, Antes, I. & Krackhardt, A. M., 28 Jun 2019, In: Frontiers in Immunology. 10, 1485.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      A novel LC system embeds analytes in pre-formed gradients for rapid, ultra-robust proteomics

      Bache, N., Geyer, P. E., Bekker-Jensen, D. B., Hørning, O., Falkenby, L., Treit, P. V., Doll, S., Paron, I., Müller, J. B., Meier, F., Olsen, Jesper Velgaard, Vorm, O. & Mann, Matthias, 2018, In: Molecular and Cellular Proteomics. 17, 11, p. 2284-2296 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Proteome profiling in cerebrospinal fluid reveals novel biomarkers of Alzheimer's disease

      Bader, J. M., Geyer, P. E., Müller, J. B., Strauss, M. T., Koch, M., Leypoldt, F., Koertvelyessy, P., Bittner, D., Schipke, C. G., Incesoy, E. I., Peters, O., Deigendesch, N., Simons, M., Jensen, Majken Karoline, Zetterberg, H. & Mann, Matthias, 2020, In: Molecular Systems Biology. 16, 6, 17 p., e9356.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      MS-Based Proteomics of Body Fluids: The End of the Beginning

      Bader, J. M., Albrecht, V. & Mann, Matthias, 2023, In: Molecular and Cellular Proteomics. 22, 7, 18 p., 100577.

      Research output: Contribution to journal › Review › Research › peer-review

    11. Published

      Proteomics separates adult-type diffuse high-grade gliomas in metabolic subgroups independent of 1p/19q codeletion and across IDH mutational status

      Bader, J. M., Deigendesch, N., Misch, M., Mann, Matthias, Koch, A. & Meissner, F., 2023, In: Cell Reports Medicine. 4, 1, 100877.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

      Bassani-Sternberg, M., Pletscher-Frankild, S., Jensen, Lars Juhl & Mann, Matthias, Mar 2015, In: Molecular and Cellular Proteomics. 14, 3, p. 658-73 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry

      Bassani-Sternberg, M., Bräunlein, E., Klar, R., Engleitner, T., Sinitcyn, P., Audehm, S., Straub, M., Weber, J., Slotta-Huspenina, J., Specht, K., Martignoni, M. E., Werner, A., Hein, R., H Busch, D., Peschel, C., Rad, R., Cox, J., Mann, Matthias & Krackhardt, A. M., 21 Nov 2016, In: Nature Communications. 7, p. 13404

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. A systematic mammalian genetic interaction map reveals pathways underlying ricin susceptibility

      Bassik, M. C., Kampmann, M., Lebbink, R. J., Wang, S., Hein, M. Y., Poser, I., Weibezahn, J., Horlbeck, M. A., Chen, S., Mann, Matthias, Hyman, A. A., Leproust, E. M., McManus, M. T. & Weissman, J. S., 14 Feb 2013, In: Cell. 152, 4, p. 909-22 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      A Cell-Autonomous Signature of Dysregulated Protein Phosphorylation Underlies Muscle Insulin Resistance in Type 2 Diabetes

      Batista, T. M., Jayavelu, A. K., Albrechtsen, Nicolai Jacob Wewer, Iovino, S., Lebastchi, J., Pan, H., Dreyfuss, J. M., Krook, A., Zierath, Juleen R, Mann, Matthias & Kahn, C. R., 2020, In: Cell Metabolism. 32, 5, p. 844-859.e5

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Proteomic Profiling of Colorectal Adenomas Identifies a Predictive Risk Signature for Development of Metachronous Advanced Colorectal Neoplasia

      Bech, J. M., Terkelsen, Thilde Bagger, Bartels, Annette Snejbjerg, Coscia, F., Doll, S., Zhao, S., Zhang, Z., Brünner, N., Lindebjerg, J., Madsen, G. I., Fang, X., Mann, Matthias & Moreira, José, 2023, In: Gastroenterology. 165, 1, p. 121-132.e5

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. A urokinase receptor-associated protein with specific collagen binding properties

      Behrendt, Niels, Jensen, O. N., Engelholm, Lars Henning, Mørtz, E., Mann, Matthias & Danø, K., 2000, In: The Journal of Biological Chemistry. 275, 3, p. 1993-2002 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Identification of a novel membrane protein that interacts specifically with the upar-prourokinase complex

      Behrendt, Niels, Engelholm, Lars Henning, Jensen, O. N., Mörtz, E., Ranne, E., Mann, Matthias & Dan, K., 1997, In: Fibrinolysis and Proteolysis. 11, Supl. 3, p. 10 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    19. Published

      Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response

      Beli, P., Lukashchuk, N., Wagner, S. A., Weinert, B. T., Olsen, Jesper Velgaard, Baskcomb, L., Mann, Matthias, Jackson, S. P. & Choudhary, Chunaram, 2012, In: Molecular Cell. 46, 2, p. 212-25 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      A unified classification approach rating clinical utility of protein biomarkers across neurologic diseases

      Bernhardt, A. M., Tiedt, S., Teupser, D., Dichgans, M., Meyer, B., Gempt, J., Kuhn, P. H., Simons, M., Palleis, C., Weidinger, E., Nübling, G., Holdt, L., Hönikl, L., Gasperi, C., Giesbertz, P., Müller, S. A., Breimann, S., Lichtenthaler, S. F., Kuster, B., Mann, M. & 8 others, Imhof, A., Barth, T., Hauck, S. M., Zetterberg, H., Otto, M., Weichert, W., Hemmer, B. & Levin, J., 2023, In: EBioMedicine. 89, 13 p., 104456.

      Research output: Contribution to journal › Review › Research › peer-review

    21. Published

      Spatial proteomics in three-dimensional intact specimens

      Bhatia, H. S., Brunner, A-D., Öztürk, F., Kapoor, S., Rong, Z., Mai, H., Thielert, M., Ali, M., Al-Maskari, R., Paetzold, J. C., Kofler, F., Todorov, M. I., Molbay, M., Kolabas, Z. I., Negwer, M., Hoeher, L., Steinke, H., Dima, A., Gupta, B., Kaltenecker, D. & 11 others, Caliskan, Ö. S., Brandt, D., Krahmer, N., Müller, S., Lichtenthaler, S. F., Hellal, F., Bechmann, I., Menze, B., Theis, F., Mann, Matthias & Ertürk, A., 2022, In: Cell. 185, 26, p. 5040-5058.e19

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      The structural context of posttranslational modifications at a proteome-wide scale

      Bludau, I., Willems, S., Zeng, W. F., Strauss, Maximilian, Hansen, F. M., Tanzer, M. C., Karayel, O., Schulman, B. A. & Mann, Matthias, 2022, In: PLOS Biology. 20, 5, 23 p., e3001636.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Quantification of the N-glycosylated secretome by super-SILAC during breast cancer progression and in human blood Samples

      Boersema, P. J., Geiger, T., Wiśniewski, J. R. & Mann, Matthias, 1 Jan 2013, In: Molecular & Cellular Proteomics. 12, 1, p. 158-171 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. The hemicellulose-degrading enzyme system of the thermophilic bacterium Clostridium stercorarium: comparative characterisation and addition of new hemicellulolytic glycoside hydrolases

      Broeker, J., Mechelke, M., Baudrexl, M., Mennerich, D., Hornburg, D., Mann, Matthias, Schwarz, W. H., Liebl, W. & Zverlov, V. V., 2018, In: Biotechnology for Biofuels. 11, p. 229

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation

      Brunner, A., Thielert, Marvin Christoffer, Vasilopoulou, C., Ammar, C., Coscia, F., Mund, Andreas, Hoerning, O. B., Bache, N., Apalategui, A., Lubeck, M., Richter, S., Fischer, D. S., Raether, O., Park, M. A., Meier, F., Theis, F. J. & Mann, Matthias, 2022, In: Molecular Systems Biology. 18, 3, 15 p., e10798.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Sleep-wake cycles drive daily dynamics of synaptic phosphorylation

      Brüning, F., Noya, S. B., Bange, T., Koutsouli, S., Rudolph, J. D., Tyagarajan, S. K., Cox, J., Mann, Matthias, Brown, S. A. & Robles, M. S., 2019, In: Science (New York, N.Y.). 366, 6462, eaav3617 .

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Cortical circuit alterations precede motor impairments in Huntington's disease mice

      Burgold, J., Schulz-Trieglaff, E. K., Voelkl, K., Gutiérrez-Ángel, S., Bader, J. M., Hosp, F., Mann, Matthias, Arzberger, T., Klein, R., Liebscher, S. & Dudanova, I., 29 Apr 2019, In: Scientific Reports. 9, 1, p. 6634

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver

      Cavalli, M., Diamanti, K., Pan, G., Spalinskas, R., Kumar, C., Deshmukh, Atul Shahaji, Mann, Matthias, Sahlén, P., Komorowski, J. & Wadelius, C., 2020, In: O M I C S: A Journal of Integrative Biology. 24, 4, 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Pervasive functional translation of noncanonical human open reading frames

      Chen, J., Brunner, A., Cogan, J. Z., Nuñez, J. K., Fields, A. P., Adamson, B., Itzhak, D. N., Li, J. Y., Mann, Matthias, Leonetti, M. D. & Weissman, J. S., 2020, In: Science. 367, 6482, p. 1140-1146 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Novel and shared neoantigen derived from histone 3 variant H3.3K27M mutation for glioma T cell therapy

      Chheda, Z. S., Kohanbash, G., Okada, K., Jahan, N., Sidney, J., Pecoraro, M., Yang, X., Carrera, D. A., Downey, K. M., Shrivastav, S., Liu, S., Lin, Y., Lagisetti, C., Chuntova, P., Watchmaker, P. B., Mueller, S., Pollack, I. F., Rajalingam, R., Carcaboso, A. M., Mann, M. & 4 others, Sette, A., Garcia, K. C., Hou, Y. & Okada, H., Jan 2018, In: The Journal of Experimental Medicine. 215, 1, p. 141-157 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Published

      OpenCell: Endogenous tagging for the cartography of human cellular organization

      Cho, N. H., Cheveralls, K. C., Brunner, A. D., Kim, K., Michaelis, A. C., Raghavan, P., Kobayashi, H., Savy, L., Li, J. Y., Canaj, H., Kim, J. Y. S., Stewart, E. M., Gnann, C., McCarthy, F., Cabrera, J. P., Brunetti, R. M., Chhun, B. B., Dingle, G., Hein, M. Y., Huang, B. & 7 others, Mehta, S. B., Weissman, J. S., Gómez-Sjöberg, R., Itzhak, D. N., Royer, L. A., Mann, Matthias & Leonetti, M. D., 2022, In: Science. 375, 6585, eabi6983.

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. DEAD box protein DDX1 regulates cytoplasmic localization of KSRP

      Chou, C., Lin, W., Lin, C., Luber, C. A., Godbout, R., Mann, Matthias & Chen, C., 4 Sep 2013, In: P L o S One. 8, 9, e73752.

      Research output: Contribution to journal › Journal article › Research

    33. Published

      Lysine acetylation targets protein complexes and co-regulates major cellular functions

      Choudhary, Chunaram, Kumar, C., Gnad, F., Nielsen, Michael Lund, Rehman, M., Walther, T. C., Olsen, Jesper Velgaard & Mann, Matthias, 2009, In: Science. 325, 5942, p. 834-40 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Published

      Decoding signalling networks by mass spectrometry-based proteomics

      Choudhary, Chunaram & Mann, Matthias, 1 Jun 2010, In: Nature Reviews. Molecular Cell Biology. 11, 6, p. 427-39 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. Published

      Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes

      Choudhary, Chunaram, Olsen, Jesper Velgaard, Brandts, C., Cox, J., Reddy, P. N. G., Böhmer, F. D., Gerke, V., Schmidt-Arras, D., Berdel, W. E., Müller-Tidow, C., Mann, Matthias & Serve, H., 2009, In: Molecular Cell. 36, 2, p. 326-39 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. Published

      The growing landscape of lysine acetylation links metabolism and cell signalling

      Choudhary, Chunaram, Weinert, B. T., Nishida, Y., Verdin, E. & Mann, Matthias, 23 Jul 2014, In: Nature Reviews. Molecular Cell Biology. 15, 8, p. 536-50 15 p.

      Research output: Contribution to journal › Review › Research › peer-review

    37. Published

      Sequencing of the First Draft of the Human Acetylome

      Choudhary, Chunaram & Mann, Matthias, 2020, In: Clinical Chemistry. 66, 6, p. 852-853 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Published

      MiT/TFEfactors controlER-phagy via transcriptional regulation ofFAM134B

      Cinque, L., De Leonibus, C., Iavazzo, M., Krahmer, N., Intartaglia, D., Salierno, F. G., De Cegli, R., Di Malta, C., Svelto, M., Lanzara, C., Maddaluno, M., Wanderlingh, L. G., Huebner, A. K., Cesana, M., Bonn, F., Polishchuk, E., Huebner, C. A., Conte, I., Dikic, I., Mann, M. & 4 others, Ballabio, A., Sacco, F., Grumati, P. & Settembre, C., 2020, In: EMBO Journal. 39, 17, 22 p., 105696.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. Published

      Proteomics for blood biomarker exploration of severe mental illness: pitfalls of the past and potential for the future

      Comes, A. L., Papiol, S., Mueller, T., Geyer, P. E., Mann, Matthias & Schulze, T. G., 1 Dec 2018, In: Translational Psychiatry. 8, p. 1-15 15 p., 160.

      Research output: Contribution to journal › Review › Research › peer-review

    40. Published

      Multi-level Proteomics Identifies CT45 as a Chemosensitivity Mediator and Immunotherapy Target in Ovarian Cancer

      Coscia, F., Lengyel, E., Duraiswamy, J., Ashcroft, B., Bassani-Sternberg, M., Wierer, M., Johnson, A., Wroblewski, K., Montag, A., Yamada, S. D., López-Méndez, B., Nilsson, Jakob, Mund, Andreas, Mann, Matthias & Curtis, M., 2018, In: Cell. 175, 1, p. 159-170.e16

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. Published

      A streamlined mass spectrometry-based proteomics workflow for large scale FFPE tissue analysis

      Coscia, F., Doll, S., Bech, J. M., Schweizer, L., Mund, Andreas, Lengyel, E., Lindebjerg, J., Madsen, G. I., Moreira, José & Mann, Matthias, 2020, In: Journal of Pathology. 251, p. 110-112

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. Published

      Quantitative, high-resolution proteomics for data-driven systems biology

      Cox, J. & Mann, Matthias, 7 Jul 2011, In: Annual Review of Biochemistry. 80, p. 273-299 27 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. 1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data

      Cox, J. & Mann, Matthias, 2012, In: B M C Bioinformatics. 13 Suppl 16, p. S12

      Research output: Contribution to journal › Journal article › Research › peer-review

    44. Published

      Andromeda - a peptide search engine integrated into the MaxQuant environment

      Cox, J., Neuhauser, N., Michalski, A., Scheltema, R. A., Olsen, Jesper Velgaard & Mann, Matthias, 1 Apr 2011, In: Journal of Proteome Research. 10, 4, p. 1794-805 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    45. Published

      Hepatocyte-specific perturbation of NAD+ biosynthetic pathways in mice induces reversible nonalcoholic steatohepatitis-like phenotypes

      Dall, M., Hassing, Anna Skab, Niu, Lili, Nielsen, Thomas Svava, Ingerslev, L. R., Sulek, K., Trammell, Sam, Gillum, M. P., Barrès, Romain, Larsen, Steen, Poulsen, Steen Seier, Mann, Matthias, Ørskov, Cathrine & Treebak, Jonas Thue, 2021, In: Journal of Biological Chemistry. 297, 6, 26 p., 101388.

      Research output: Contribution to journal › Journal article › Research › peer-review

    46. N-linked glycosylation enrichment for in-depth cell surface proteomics of diffuse large B-cell lymphoma subtypes

      Deeb, S. J., Cox, J., Schmidt-Supprian, M. & Mann, Matthias, 4 Nov 2013, In: Molecular & Cellular Proteomics.

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. Identification of the transcription factor MAZ as a regulator of erythropoiesis

      Deen, D., Butter, F., Daniels, D. E., Ferrer-Vicens, I., Ferguson, D. C. J., Holland, M. L., Samara, V., Sloane-Stanley, J. A., Ayyub, H., Mann, Matthias, Frayne, J., Garrick, D. & Vernimmen, D., 10 Aug 2021, In: Blood advances. 5, 15, p. 3002-3015 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. Quantitative proteomic assessment of very early cellular signaling events

      Dengjel, J., Akimov, V., Olsen, Jesper Velgaard, Bunkenborg, J., Mann, Matthias, Blagoev, B. & Andersen, J. S., 2007, In: Nature Biotechnology. 25, 5, p. 566-8 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    49. Published

      Proteomics-Based Comparative Mapping of the Secretomes of Human Brown and White Adipocytes Reveals EPDR1 as a Novel Batokine

      Deshmukh, A. S., Peijs, L., Beaudry, J. L., Jespersen, N. Z., Nielsen, C. H., Ma, T., Brunner, A. D., Larsen, T. J., Bayarri-Olmos, R., Prabhakar, B. S., Helgstrand, C., Severinsen, M. C. K., Holst, B., Kjaer, A., Tang-Christensen, M., Sanfridson, A., Garred, P., Privé, G. G., Pedersen, B. K., Gerhart-Hines, Z. & 4 others, Nielsen, S., Drucker, D. J., Mann, Matthias & Schéele, Camilla Charlotte Nielsen, 2019, In: Cell Metabolism. 30, 5, p. 963-975.e7 21 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    50. Published

      Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow

      Deshmukh, Atul Shahaji, Cox, J., Jensen, Lars Juhl, Meissner, F. & Mann, Matthias, 6 Nov 2015, In: Journal of Proteome Research. 14, 11, p. 4885-95 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    51. Published

      Deep proteomics of mouse skeletal muscle enables quantitation of protein isoforms, metabolic pathways and transcription factors

      Deshmukh, Atul Shahaji, Murgia, M., Nagaraja, N., Treebak, Jonas Thue, Cox, J. & Mann, Matthias, Apr 2015, In: Molecular and Cellular Proteomics. 14, 4, p. 841-853

      Research output: Contribution to journal › Journal article › Research › peer-review

    52. Published

      Deep muscle-proteomic analysis of freeze-dried human muscle biopsies reveals fiber type-specific adaptations to exercise training

      Deshmukh, Atul Shahaji, Steenberg, D. E., Hostrup, Morten, Birk, Jesper Bratz, Larsen, Jeppe Kjærgaard, Santos, A., Kjøbsted, Rasmus, Hingst, J. R., Schéele, Camilla Charlotte Nielsen, Murgia, M., Kiens, Bente, Richter, Erik A., Mann, Matthias & Wojtaszewski, Jørgen F P, 2021, In: Nature Communications. 12, 15 p., 304.

      Research output: Contribution to journal › Journal article › Research › peer-review

    53. CRL2(Lrr1) promotes unloading of the vertebrate replisome from chromatin during replication termination

      Dewar, J. M., Low, E., Mann, Matthias, Räschle, M. & Walter, J. C., 1 Feb 2017, In: Genes & Development. 31, 3, p. 275-290 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    54. Published

      C/EBPα creates elite cells for iPSC reprogramming by upregulating Klf4 and increasing the levels of Lsd1 and Brd4

      Di Stefano, B., Collombet, S., Jakobsen, J. S., Wierer, M., Sardina, J. L., Lackner, A., Stadhouders, R., Segura-Morales, C., Francesconi, M., Limone, F., Mann, Matthias, Porse, Bo Torben, Thieffry, D. & Graf, T., Apr 2016, In: Nature Cell Biology. 18, 4, p. 371-81 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    55. Published

      Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues

      Diamanti, K., Cavalli, M., Pereira, M. J., Pan, G., Castillejo-López, C., Kumar, C., Mundt Madsen, Filip Oskar, Komorowski, J., Deshmukh, Atul Shahaji, Mann, Matthias, Korsgren, O., Eriksson, J. W. & Wadelius, C., 2022, In: Cell Reports Medicine. 3, 10, 21 p., 100763.

      Research output: Contribution to journal › Journal article › Research › peer-review

    56. Gene-selective transcription promotes the inhibition of tissue reparative macrophages by TNF

      Dichtl, S., Sanin, D. E., Koss, C. K., Willenborg, S., Petzold, A., Tanzer, M. C., Dahl, A., Kabat, A. M., Lindenthal, L., Zeitler, L., Satzinger, S., Strasser, A., Mann, Matthias, Roers, A., Eming, S. A., El Kasmi, K. C., Pearce, E. J. & Murray, P. J., Apr 2022, In: Life Science Alliance. 5, 4

      Research output: Contribution to journal › Journal article › Research › peer-review

    57. Published

      Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells

      Ding, L., Paszkowski-Rogacz, M., Winzi, M., Chakraborty, D., Theis, M., Singh, S., Ciotta, G., Poser, I., Roguev, A., Chu, W. K., Choudhary, Chunaram, Mann, Matthias, Stewart, A. F., Krogan, N. & Buchholz, F., 26 Aug 2015, In: Cell Systems. 1, 2, p. 141-151 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    58. Published

      The Case for Proteomics and Phospho-Proteomics in Personalized Cancer Medicine

      Doll, S., Gnad, F. & Mann, Matthias, 2019, In: Proteomics - Clinical Applications. 13, 2, 10 p., e1800113.

      Research output: Contribution to journal › Review › Research › peer-review

    59. Published

      Region and cell-type resolved quantitative proteomic map of the human heart

      Doll, S., Dreßen, M., Geyer, P. E., Itzhak, D. N., Braun, C., Doppler, S. A., Meier, F., Deutsch, M., Lahm, H., Lange, R., Krane, M. & Mann, Matthias, 13 Nov 2017, In: Nature Communications. 8, 1, 13 p., 1469.

      Research output: Contribution to journal › Journal article › Research › peer-review

    60. Published

      Rapid proteomic analysis for solid tumors reveals LSD1 as a drug target in an end-stage cancer patient

      Doll, S., Kriegmair, M. C., Santos, A., Wierer, M., Coscia, F., Neil, H. M., Porubsky, S., Geyer, P. E., Mund, Andreas, Nuhn, P. & Mann, Matthias, 2018, In: Molecular Oncology. 12, 8, p. 1296-1307 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    61. Published

      A spatially resolved proteomic atlas of human skin and its associated immune system

      Dyring-Andersen, Beatrice, Coscia, F., Santos, A., Løvendorf, M. B., Sørensen, L. B. P., Niu, Lili, Andersen, J. L., Clark, R., Skov, L., Teunissen, M. B. & Mann, Matthias, 2019, In: Journal of Investigative Dermatology. 139, 9, suppl., p. S259 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    62. Published

      A spatially resolved proteomic atlas of psoriatic skin

      Dyring-Andersen, Beatrice, Lovendorf, M. B., Santos, A., Coscia, F., Sørensen, L. B. P., Niu, Lili, Andersen, J. L., Teunissen, M. B., Skov, L. & Mann, Matthias, 2019, In: Journal of Investigative Dermatology. 139, 9, suppl., p. S260 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    63. Published

      Spatially and cell-type resolved quantitative proteomic atlas of healthy human skin

      Dyring-Andersen, Beatrice, Løvendorf, M. B., Coscia, F., Santos, A., Møller, L. B. P., Colaço, A. R., Niu, Lili, Bzorek, M., Doll, S., Andersen, J. L., Clark, R. A., Skov, Lone, Teunissen, M. B. M. & Mann, Matthias, 2020, In: Nature Communications. 11, 1, 5587.

      Research output: Contribution to journal › Journal article › Research › peer-review

    64. Published

      Proteomics reveals NNMT as a master metabolic regulator of cancer-associated fibroblasts

      Eckert, M. A., Coscia, F., Chryplewicz, A., Chang, J. W., Hernandez, K. M., Pan, S., Tienda, S. M., Nahotko, D. A., Li, G., Blaženović, I., Lastra, R. R., Curtis, M., Yamada, S. D., Perets, R., McGregor, S. M., Andrade, J., Fiehn, O., Moellering, R. E., Mann, Matthias & Lengyel, E., 2019, In: Nature. 569, 7758, p. 723-728

      Research output: Contribution to journal › Letter › Research › peer-review

    65. Published

      Cell-Type- and Brain-Region-Resolved Mouse Brain Lipidome

      Fitzner, D., Bader, J. M., Penkert, H., Bergner, C. G., Su, M., Weil, M., Surma, M. A., Mann, Matthias, Klose, C. & Simons, M., 2020, In: Cell Reports. 32, 21 p., 108132.

      Research output: Contribution to journal › Journal article › Research › peer-review

    66. Published

      Molecular response to PARP1 inhibition in ovarian cancer cells as determined by mass spectrometry based proteomics

      Franz, A., Coscia, F., Shen, C., Charaoui, L., Mann, Matthias & Sander, C., 2021, In: Journal of Ovarian Research. 14, 14 p., 140.

      Research output: Contribution to journal › Journal article › Research › peer-review

    67. Identification of covalent modifications regulating immune signaling complex composition and phenotype

      Frauenstein, A., Ebner, S., Hansen, F. M., Sinha, A., Phulphagar, K., Swatek, K., Hornburg, D., Mann, Matthias & Meissner, F., Jul 2021, In: Molecular Systems Biology. 17, 7, p. e10125

      Research output: Contribution to journal › Journal article › Research › peer-review

    68. Published

      Towards Precision Dermatology: Emerging Role of Proteomic Analysis of the Skin

      Fredman, G., Skov, Lone, Mann, Matthias & Dyring-Andersen, Beatrice, 2022, In: Dermatology. 238, p. 185–194

      Research output: Contribution to journal › Review › Research › peer-review

    69. Molecular basis of PRC1 targeting to Polycomb response elements by PhoRC

      Frey, F., Sheahan, T., Finkl, K., Stoehr, G., Mann, Matthias, Benda, C. & Müller, J., 1 May 2016, In: Genes & Development. 30, 9, p. 1116-27 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    70. Published

      Mechanism of replication-coupled DNA-protein crosslink proteolysis by SPRTN and the proteasome

      Gao, A., Larsen, N., Sparks, J., Gallina, I., Mann, Matthias, Räschle, M., Walter, J. & Duxin, Julien, 2018, bioRxiv, 54 p.

      Research output: Working paper › Preprint › Research

    71. Published

      The NSP3 protein of SARS-CoV-2 binds fragile X mental retardation proteins to disrupt UBAP2L interactions

      Garvanska, D. H., Alvarado, R. E., Mundt, F. O., Lindqvist, R., Duel, J. K., Coscia, F., Nilsson, E., Lokugamage, K., Johnson, B. A., Plante, J. A., Morris, D. R., Vu, M. N., Estes, L. K., McLeland, A. M., Walker, J., Crocquet-Valdes, P. A., Mendez, B. L., Plante, K. S., Walker, D. H., Weisser, M. B. & 4 others, Överby, A. K., Mann, Matthias, Menachery, V. D. & Nilsson, Jakob, 2024, In: EMBO Reports.

      Research output: Contribution to journal › Journal article › Research › peer-review

    72. L-Arginine Modulates T Cell Metabolism and Enhances Survival and Anti-tumor Activity

      Geiger, R., Rieckmann, J. C., Wolf, T., Basso, C., Feng, Y., Fuhrer, T., Kogadeeva, M., Picotti, P., Meissner, F., Mann, Matthias, Zamboni, N., Sallusto, F. & Lanzavecchia, A., 20 Oct 2016, In: Cell. 167, 3, p. 829-842.e13

      Research output: Contribution to journal › Journal article › Research › peer-review

    73. Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse

      Geiger, T., Velic, A., Macek, B., Lundberg, E., Kampf, C., Nagaraj, N., Uhlen, M., Cox, J. & Mann, Matthias, Jun 2013, In: Molecular & Cellular Proteomics. 12, 6, p. 1709-22 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    74. Published

      Plasma Proteome Profiling to Assess Human Health and Disease

      Geyer, P. E., Kulak, N. A., Pichler, G., Holdt, L. M., Teupser, D. & Mann, Matthias, 23 Mar 2016, In: Cell Systems. 2, 3, p. 185-95 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    75. Published

      Revisiting biomarker discovery by plasma proteomics

      Geyer, P. E., Holdt, L. M., Teupser, D. & Mann, Matthias, 26 Sep 2017, In: Molecular Systems Biology. 13, 9, 16 p., 942.

      Research output: Contribution to journal › Review › Research › peer-review

    76. Published

      Proteomics reveals the effects of sustained weight loss on the human plasma proteome

      Geyer, P. E., Albrechtsen, Nicolai Jacob Wewer, Tyanova, S., Grassl, N., Iepsen, E. P. W., Lundgren, J., Madsbad, Sten, Holst, Jens Juul, Torekov, Signe Sørensen & Mann, Matthias, 22 Dec 2016, In: Molecular Systems Biology. 12, 16 p., 901.

      Research output: Contribution to journal › Journal article › Research › peer-review

    77. Published

      High-resolution serum proteome trajectories in COVID-19 reveal patient-specific seroconversion

      Geyer, P. E., Arend, F. M., Doll, S., Louiset, M., Virreira Winter, S., Müller-Reif, J. B., Torun, F. M., Weigand, M., Eichhorn, P., Bruegel, M., Strauss, M. T., Holdt, L. M., Mann, Matthias & Teupser, D., 2021, In: EMBO Molecular Medicine. 13, 8, 16 p., e14167.

      Research output: Contribution to journal › Journal article › Research › peer-review

    78. Published

      Plasma Proteome Profiling to detect and avoid sample-related biases in biomarker studies

      Geyer, P. E., Voytik, E., Treit, P. V., Doll, S., Kleinhempel, A., Niu, Lili, Müller, J. B., Buchholtz, M., Bader, J. M., Teupser, D., Holdt, L. M. & Mann, Matthias, 2019, In: EMBO Molecular Medicine. 11, 11, e10427.

      Research output: Contribution to journal › Journal article › Research › peer-review

    79. Published

      Plasma proteomic data can contain personally identifiable, sensitive information and incidental findings

      Geyer, P. E., Porsdam Mann, Sebastian, Treit, P. V. & Mann, Matthias, 2021, In: Molecular and Cellular Proteomics. 20, 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    80. Published

      Loss of full-length hnRNP R isoform impairs DNA damage response in motoneurons by inhibiting Yb1 recruitment to chromatin

      Ghanawi, H., Hennlein, L., Zare, A., Bader, J., Salehi, S., Hornburg, D., Ji, C., Sivadasan, R., Drepper, C., Meissner, F., Mann, Matthias, Jablonka, S., Briese, M. & Sendtner, M., 2021, In: Nucleic Acids Symposium Series. 49, 21, p. 12284-12305 22 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    81. Published

      High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast

      Gnad, F., de Godoy, L. M. F., Cox, J., Neuhauser, N., Ren, S., Olsen, Jesper Velgaard & Mann, Matthias, 2009, In: Proteomics. 9, 20, p. 4642-4652 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    82. PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

      Gnad, F., Ren, S., Cox, J., Olsen, Jesper Velgaard, Macek, B., Oroshi, M. & Mann, Matthias, 2007, In: Genome Biology. 8, 11, p. R250

      Research output: Contribution to journal › Journal article › Research › peer-review

    83. MicroRNAs of the miR-290-295 Family Maintain Bivalency in Mouse Embryonic Stem Cells

      Graham, B., Marcais, A., Dharmalingam, G., Carroll, T., Kanellopoulou, C., Graumann, J., Nesterova, T. B., Bermange, A., Brazauskas, P., Xella, B., Kriaucionis, S., Higgs, D. R., Brockdorff, N., Mann, Matthias, Fisher, A. G. & Merkenschlager, M., 10 May 2016, In: Stem Cell Reports. 6, 5, p. 635-642 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    84. Antisense-mediated exon skipping: a therapeutic strategy for titin-based dilated cardiomyopathy

      Gramlich, M., Pane, L. S., Zhou, Q., Chen, Z., Murgia, M., Schötterl, S., Goedel, A., Metzger, K., Brade, T., Parrotta, E., Schaller, M., Gerull, B., Thierfelder, L., Aartsma-Rus, A., Labeit, S., Atherton, J. J., McGaughran, J., Harvey, R. P., Sinnecker, D., Mann, M. & 3 others, Laugwitz, K., Gawaz, M. P. & Moretti, A., 9 Mar 2015, In: EMBO Molecular Medicine. 7, 5, p. 562-576 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    85. Published

      Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome

      Grassl, N., Kulak, N. A., Pichler, G., Geyer, P. E., Jung, J., Schubert, S., Sinitcyn, P., Cox, J. & Mann, Matthias, 21 Apr 2016, In: Genome Medicine. 8, 13 p., 44.

      Research output: Contribution to journal › Journal article › Research › peer-review

    86. Molecular and structural architecture of polyQ aggregates in yeast

      Gruber, A., Hornburg, D., Antonin, M., Krahmer, N., Collado, J., Schaffer, M., Zubaite, G., Lüchtenborg, C., Sachsenheimer, T., Brügger, B., Mann, Matthias, Baumeister, W., Hartl, F. U., Hipp, M. S. & Fernández-Busnadiego, R., 2018, In: Proceedings of the National Academy of Sciences of the United States of America.

      Research output: Contribution to journal › Journal article › Research › peer-review

    87. Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

      Gruhler, A., Olsen, Jesper Velgaard, Mohammed, S., Mortensen, P., Faergeman, N. J., Mann, Matthias & Jensen, O. N., 2005, In: Molecular and Cellular Proteomics. 4, 3, p. 310-27 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    88. PLEKHA7 Recruits PDZD11 to Adherens Junctions to Stabilize Nectins

      Guerrera, D., Shah, J., Vasileva, E., Sluysmans, S., Méan, I., Jond, L., Poser, I., Mann, Matthias, Hyman, A. A. & Citi, S., 20 May 2016, In: The Journal of Biological Chemistry. 291, 21, p. 11016-29 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    89. Published

      Mobi-DIK (Ion Mobility DIA Analysis Kit): Targeted analysis software for diaPASEF data improves proteome coverage

      Ha, A., Frank, M., Meier, F., Brunner, A., Kaspar-Schoenefeld, S., Koch, S., Lubeck, M., Raether, O., Collins, B. C., Aebersold, R., Mann, Matthias & Rost, H., 2019, In: Molecular & Cellular Proteomics. 18, 8, p. S17 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    90. Published

      Activation of the ATR kinase by the RPA-binding protein ETAA1

      Haahr, Peter Thorlund, Hoffmann, Saskia, Tollenaere, M. A. X., Ho, T., Toledo Lazaro, L. I., Mann, Matthias, Bekker-Jensen, Simon Holst, Räschle, M. & Mailand, Niels, Nov 2016, In: Nature Cell Biology. 18, 11, p. 1196–1207

      Research output: Contribution to journal › Journal article › Research › peer-review

    91. Signaling defects associated with insulin resistance in nondiabetic and diabetic individuals and modification by sex

      Haider, N., Lebastchi, J., Jayavelu, A. K., Batista, T. M., Pan, H., Dreyfuss, J. M., Carcamo-Orive, I., Knowles, J. W., Mann, Matthias & Kahn, C. R., 1 Nov 2021, In: The Journal of Clinical Investigation. 131, 21

      Research output: Contribution to journal › Journal article › Research › peer-review

    92. Data-independent acquisition method for ubiquitinome analysis reveals regulation of circadian biology

      Hansen, F. M., Tanzer, M. C., Brüning, F., Bludau, I., Stafford, C., Schulman, B. A., Robles, M. S., Karayel, O. & Mann, Matthias, 11 Jan 2021, In: Nature Communications. 12, 1, p. 254

      Research output: Contribution to journal › Journal article › Research › peer-review

    93. Published

      SCAI promotes DNA double-strand break repair in distinct chromosomal contexts

      Hansen, R. K., Mund, A., Poulsen, S. L., Sandoval, M., Klement, K., Tsouroula, K., Tollenaere, M. A. X., Räschle, M., Soria, R., Offermanns, S., Worzfeld, T., Grosse, R., Brandt, D. T., Rozell, B., Mann, M., Cole, F., Soutoglou, E., Goodarzi, A. A., Daniel, J. A., Mailand, N. & 1 others, Bekker-Jensen, Simon Holst, 7 Nov 2016, In: Nature Cell Biology. 18, 12, p. 1357–1366

      Research output: Contribution to journal › Letter › Research › peer-review

    94. Published

      Mesothelial Cell HIF1α Expression Is Metabolically Downregulated by Metformin to Prevent Oncogenic Tumor-Stromal Crosstalk

      Hart, P. C., Kenny, H. A., Grassl, N., Watters, K. M., Litchfield, L. M., Coscia, F., Blaženović, I., Ploetzky, L., Fiehn, O., Mann, Matthias, Lengyel, E. & Romero, I. L., 2019, In: Cell Reports. 29, 12, p. 4086-4098.e6

      Research output: Contribution to journal › Journal article › Research › peer-review

    95. Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis

      Hartl, M., Füßl, M., Boersema, P. J., Jost, J., Kramer, K., Bakirbas, A., Sindlinger, J., Plöchinger, M., Leister, D., Uhrig, G., Moorhead, G. B., Cox, J., Salvucci, M. E., Schwarzer, D., Mann, Matthias & Finkemeier, I., 2017, In: Molecular Systems Biology. 13, 10, 16 p., 949.

      Research output: Contribution to journal › Journal article › Research › peer-review

    96. Fam20C regulates protein secretion by Cab45 phosphorylation

      Hecht, T. K., Blank, B., Steger, M., Lopez, V., Beck, G., Ramazanov, B., Mann, Matthias, Tagliabracci, V. & von Blume, J., 1 Jun 2020, In: The Journal of Cell Biology. 219, 6

      Research output: Contribution to journal › Journal article › Research › peer-review

    97. Published

      Activity-based profiling of cullin–RING E3 networks by conformation-specific probes

      Henneberg, L. T., Singh, J., Duda, D. M., Baek, K., Yanishevski, D., Murray, P. J., Mann, Matthias, Sidhu, S. S. & Schulman, B. A., 2023, In: Nature Chemical Biology. 19, p. 1513-1523

      Research output: Contribution to journal › Journal article › Research › peer-review

    98. Signaling initiated by overexpression of the fibroblast growth factor receptor-1 investigated by mass spectrometry

      Hinsby, A. M., Olsen, Jesper Velgaard, Bennett, K. L. & Mann, Matthias, 2003, In: Molecular and Cellular Proteomics. 2, 1, p. 29-36 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    99. Tyrosine phosphoproteomics of fibroblast growth factor signaling: a role for insulin receptor substrate-4

      Hinsby, A. M., Olsen, Jesper Velgaard & Mann, Matthias, 2004, In: Journal of Biological Chemistry. 279, 45, p. 46438-47 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    100. Interaction between AP-5 and the hereditary spastic paraplegia proteins SPG11 and SPG15

      Hirst, J., Borner, G. H. H., Edgar, J., Hein, M. Y., Mann, Matthias, Buchholz, F., Antrobus, R. & Robinson, M. S., Aug 2013, In: Molecular Biology of the Cell. 24, 16, p. 2558-69 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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