Nikos Hatzakis
Professor
Department of Chemistry
Universitetsparken 5
2100 København Ø
- 2024
- Published
SEMORE: SEgmentation and MORphological fingErprinting by machine learning automates super-resolution data analysis
Bender, S. W. B., Dreisler, M. W., Zhang, Min, Kæstel-Hansen, Jacob & Hatzakis, Nikos, 2024, In: Nature Communications. 15, 1, 13 p., 1763.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Protein Tracking: Everything, everywhere, almost at once
Kæstel-Hansen, Jacob & Hatzakis, Nikos, 2024, In: eLife. 13, 3 p., e95362.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Neonatal intestinal mucus barrier changes in response to maturity, inflammation, and sodium decanoate supplementation
Mortensen, Janni Støvring, Bohr, S. S. R., Krog, Lasse Skjoldborg, Bøtker, Johan Peter, Kapousidou, V., Saaby, Lasse, Hatzakis, Nikos, Nielsen, Hanne Mørck, Nguyen, Duc Ninh & Rønholt, Stine, 2024, In: Scientific Reports. 14, 1, 17 p., 7665.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Probing Activation and Conformational Dynamics of the Vesicle-Reconstituted β2 Adrenergic Receptor at the Single-Molecule Level
Tutkus, M., Lundgaard, C. V., Veshaguri, S., Tønnesen, A., Hatzakis, Nikos, Rasmussen, Søren Gøgsig Faarup & Stamou, Dimitrios, 2024, In: Journal of Physical Chemistry B. 128, 9, p. 2124–2133 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deconvoluting the Effect of Cell-Penetrating Peptides for Enhanced and Controlled Insertion of Large-Scale DNA Nanopores
Zhang, X., Malle, M. G., Thomsen, R. P., Sørensen, R. S., Sørensen, Emily Claire Winther, Hatzakis, Nikos & Kjems, J., 2024, In: ACS Applied Materials and Interfaces. 16, 15, p. 18422−18433 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Direct observation and classification of heterogeneous protein aggregation in real-time through super-resolution and aggregational fingerprinting
Bender, S., Kæstel-Hansen, Jacob, Zhang, Min & Hatzakis, Nikos, 2023, In: Biophysical Journal. 122, 3 Supplement 1, p. 16a 1 p.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Dimensional Reduction for Single-Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67
Benning, N. A., Kæstel-Hansen, Jacob, Rashid, F., Park, S., Urteaga, R. M., Liao, T., Hao, J., Berger, J. M., Hatzakis, Nikos & Ha, T., 2023, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 127, 9, p. 1922–1931 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enhanced hexamerization of insulin via assembly pathway rerouting revealed by single particle studies
Bohr, Freja Schmidt-Rasmussen, Bohr, S. S. R., Mishra, N. K., González-Foutel, N. S., Pinholt, H. D., Wu, S., Nielsen, E. M., Zhang, Min, Kjaergaard, M., Jensen, Knud Jørgen & Hatzakis, Nikos, 2023, In: Communications Biology . 6, 1, 14 p., 178.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Making the undetectable detectable: Pushing limits of biomolecular recognition by ultra-sensitive multiplexed single-particle liposome readouts
Hatzakis, Nikos, 2023, In: Biophysical Journal. 122, 3 Supplement 1, p. 231a-232a 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-Particle Tracking of Thermomyces lanuginosus Lipase Reveals How Mutations in the Lid Region Remodel Its Diffusion
Iversen, J. F., Bohr, S. S. R., Pinholt, H. D., Moses, M. E., Iversen, L., Christensen, S. M., Hatzakis, Nikos & Zhang, Min, 2023, In: Biomolecules. 13, 4, 11 p., 631.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Realizing integration in structural biology: The 2022 ISBUC Annual Meeting
Kragelund, Birthe Brandt, Loland, Claus Juul, Montoya, Guillermo, Hatzakis, Nikos, Martinez, Karen Laurence, Gajhede, Michael, Christensen, Caspar Elo & Holt, Lucy, 2023, In: Structure. 31, 7, p. 747-754Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rapid extraction of time-dependent behaviors of endo-lysosomal structures and their cargo aided by deep learning
Kæstel-Hansen, Jacob, Kreutzberger, A., Kirchhausen, T. & Hatzakis, Nikos, 2023, In: Biophysical Journal. 122, 3 Supplement 1, p. 517a 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
In vitro and in vivo immunogenicity assessment of protein aggregate characteristics
Thorlaksen, C., Schultz, H. S., Gammelgaard, S. K., Jiskoot, W., Hatzakis, Nikos, Nielsen, F. S., Solberg, H., Foderà, Vito, Bartholdy, C. & Groenning, M., 2023, In: International Journal of Pharmaceutics. 631, 122490.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heterogeneous and Surface-Catalyzed Amyloid Aggregation Monitored by Spatially Resolved Fluorescence and Single Molecule Microscopy
Zhou, X., Sinkjær, Anders Wilgaard, Zhang, Min, Pinholt, H. D., Nielsen, Hanne Mørck, Hatzakis, Nikos, van de Weert, Marco & Foderà, Vito, 2023, In: The Journal of Physical Chemistry Letters. 14, 4, p. 912-919Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
Direct observations of drug nanocarrier interactions and mobility within biological interfaces
Bohr, S. S. R., Streck, S., Pinholt, H., Wan, F., Mcdowell, A., Nielsen, Hanne Mørck & Hatzakis, Nikos, 2022, In: Biophysical Journal. 121, 3, p. 72a-73a 2 p., 355-Pos.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories
Goetz, M., Barth, A., Bohr, S. S-R., Boerner, R., Chen, J., Cordes, T., Erie, D. A., Gebhardt, C., Hadzic, M. C. A. S., Hamilton, G. L., Hatzakis, N. S., Hugel, T., Kisley, L., Lamb, D. C., de Lannoy, C., Mahn, C., Dunukara, D., de Ridder, D., Sanabria, H., Schimpf, J. & 9 others, , 2022, In: Nature Communications. 13, 1, 12 p., 5402.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biased metabolism via small-molecule ligands binding to P450 oxidoreductase
Hatzakis, Nikos, Jensen, S. B., Thodberg, S., Parween, S., Moses, M. E., Hansen, C. C., Knudsen, C., Giudice, R. D., Lund, P. M., Castano, P., Bustamante, Y. G., Jorgennsen, F. S., Pandey, A. V., Laursen, Tomas & Møller, Birger Lindberg, 1 Feb 2022, In: Biophysical Journal. 121, 3, p. 52a 1 p., 250-Pos.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
Single-particle combinatorial multiplexed liposome fusion mediated by DNA
Malle, M., Loffler, P., Bohr, S. S., Sletfjerding, M., Risgaard, N., Jensen, S., Zhang, Min, Hedegård, Per, Vogel, S. & Hatzakis, Nikos, 2022, In: Nature Chemistry. 14, 5, p. 558–565 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physical and barrier changes in gastrointestinal mucus induced by the permeation enhancer sodium 8-[(2-hydroxybenzoyl)amino]octanoate (SNAC)
Mortensen, Janni Støvring, Bohr, S. S. R., Rønholt, Stine, Hatzakis, Nikos, Saaby, Lasse & Nielsen, Hanne Mørck, 2022, In: Journal of Controlled Release. 352, p. 163-178 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The dopamine transporter antiports potassium to increase the uptake of dopamine
Schmidt, S. G., Malle, M. G., Nielsen, A. K., Bohr, S. S., Pugh, Ciara Frances, Nielsen, Jeppe Cederholm, Poulsen, I. H., Rand, Kasper Dyrberg, Hatzakis, Nikos & Loland, Claus Juul, 2022, In: Nature Communications. 13, 1, 12 p., 2446.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Morphological integrity of insulin amyloid-like aggregates depends on preparation methods and post-production treatments
Thorlaksen, C., Stanciu, A., Neergaard, M. B., Hatzakis, Nikos, Foderà, Vito & Groenning, M., 2022, In: European Journal of Pharmaceutics and Biopharmaceutics. 179, p. 147-155 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single Vesicle Fluorescence-Bleaching Assay for Multi-Parameter Analysis of Proteoliposomes by Total Internal Reflection Fluorescence Microscopy
Veit, S., Paweletz, L. C., Bohr, S. S., Menon, A. K., Hatzakis, Nikos & Pomorski, Thomas Guenther, 2022, In: ACS applied materials & interfaces. 14, 26, p. 29659−29667 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Robust Dual Optical Sensor for pH and Dissolved Oxygen
Wang, L., Jensen, K., Hatzakis, Nikos, Zhang, Min & Sørensen, Thomas Just, 2022, In: ACS Sensors. 7, 5, p. 1506–1513Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Direct observation of heterogeneous formation of amyloid spherulites in real-time by super-resolution microscopy
Zhang, Min, Pinholt, H., Zhou, X., Bohr, S., Banetta, L., Zaccone, A., Foderà, Vito & Hatzakis, Nikos, 2022, In: Communications Biology . 5, 1, 10 p., 850.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Carbohydrate-Derived Metal-Chelator-Triggered Lipids for Liposomal Drug Delivery
Holmstrøm, T., Galsgaard Malle, M., Wu, S., Jensen, Knud Jørgen, Hatzakis, Nikos & Pedersen, Christian Marcus, 2021, In: Chemistry - A European Journal. 27, 23, p. 6917-6922 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 6090
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Insights in enzyme functional dynamics and activity regulation by single molecule studies
Research output: Contribution to journal › Journal article › Research › peer-review
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202
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Single enzyme experiments reveal a long-lifetime proton leak state in a heme-copper oxidase
Research output: Contribution to journal › Journal article › Research › peer-review
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191
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Links of conformational sampling to functional plasticity and clinical phenotypes by single molecule studies
Research output: Contribution to journal › Conference abstract in journal › Research
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