Adnan Halim

Adnan Halim

Associate Professor

Member of:

    ORCID: 0000-0003-1629-187X

    Publication year:
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    1 - 38 out of 38Page size: 500
    1. 2024
    2. Published

      Molecular-level architecture of Chlamydomonas reinhardtii’s glycoprotein-rich cell wall

      Poulhazan, A., Arnold, A. A., Mentink-Vigier, F., Muszyński, A., Azadi, P., Halim, Adnan, Vakhrushev, Sergey, Joshi, Hiren Jitendra, Wang, T., Warschawski, D. E. & Marcotte, I., 2024, In: Nature Communications. 15, 1, 15 p., 986.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. 2023
    4. Published

      Identification of global inhibitors of cellular glycosylation

      Sørensen, D. M., Büll, C., Madsen, T. D., Lira-Navarrete, E., Clausen, T. M., Clark, A. E., Garretson, A. F., Karlsson, R., Pijnenborg, J. F. A., Yin, X., Miller, R. L., Chanda, S. K., Boltje, T. J., Schjoldager, K. T., Vakhrushev, S. Y., Halim, A., Esko, J. D., Carlin, A. F., Hurtado-Guerrero, R., Weigert, R. & 2 others, Clausen, Henrik & Narimatsu, Yoshiki, 2023, In: Nature Communications. 14, 1, 19 p., 948.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      The SHDRA syndrome-associated gene TMEM260 encodes a protein-specific O-mannosyltransferase

      Larsen, I. S. B., Povolo, Lorenzo, Zhou, L., Tian, W., Mygind, Kasper Johansen, Hintze, John, Jiang, C., Hartill, V., Prescott, K., Johnson, C. A., Mullegama, S. V., McConkie-Rosell, A., McDonald, M., Hansen, Lars, Vakhrushev, Sergey, Schjoldager, Katrine Ter-Borch Gram, Clausen, Henrik, Worzfeld, T., Joshi, Hiren Jitendra & Halim, Adnan, 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 21, p. e2302584120

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. 2022
    7. Published

      A Bacterial Mannose Binding Lectin as a Tool for the Enrichment of C- and O-Mannosylated Peptides

      Hütte, H. J., Tiemann, B., Shcherbakova, A., Grote, V., Hoffmann, M., Povolo, Lorenzo, Lommel, M., Strahl, S., Vakhrushev, Sergey, Rapp, E., Buettner, F. F. R., Halim, Adnan, Imberty, A. & Bakker, H., 2022, In: Analytical Chemistry. 94, 20, p. 7329–7338

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Glycoproteomics

      Bagdonaite, Ieva , Malaker, S. A., Polasky, D. A., Riley, N. M., Schjoldager, Katrine Ter-Borch Gram, Vakhrushev, Sergey, Halim, Adnan, Aoki-Kinoshita, K. F., Nesvizhskii, A. I., Bertozzi, C. R., Wandall, Hans H., Parker, B. L., Thaysen-Andersen, M. & Scott, N. E., 2022, In: Nature Reviews Methods Primers. 2, 1, 29 p., 48.

      Research output: Contribution to journal › Review › Research › peer-review

    9. 2021
    10. Published

      Display of the human mucinome with defined O-glycans by gene engineered cells

      Nason, R., Büll, C., Konstantinidi, A., Sun, L., Ye, Z., Halim, A., Du, W., Sørensen, D. M., Durbesson, F., Furukawa, S., Mandel, U., Joshi, H. J., Dworkin, L. A., Hansen, L., David, L., Iverson, T. M., Bensing, B. A., Sullam, P. M., Varki, A., Vries, E. D. & 6 others, de Haan, C. A. M., Vincentelli, R., Henrissat, B., Vakhrushev, Sergey, Clausen, Henrik & Narimatsu, Yoshiki, 2021, In: Nature Communications. 12, 1, 16 p., 4070.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Drosophila O-GlcNAcase Mutants Reveal an Expanded Glycoproteome and Novel Growth and Longevity Phenotypes

      Akan, I., Halim, Adnan, Vakhrushev, Sergey, Clausen, Henrik & Hanover, J. A., 2021, In: Cells. 10, 5, 13 p., 1026.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      O-linked mucin-type glycosylation regulates the transcriptional programme downstream of EGFR

      Tajadura-Ortega, V., Gambardella, G., Skinner, A., Halim, Adnan, Van Coillie, Julie, Schjoldager, Katrine Ter-Borch Gram, Beatson, R., Graham, R., Achkova, D., Taylor-Papadimitriou, J., Ciccarelli, F. D. & Burchell, J. M., 2021, In: Glycobiology. 31, 3, p. 200–210

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. 2020
    14. Published

      Endoplasmic reticulum transmembrane protein TMTC3 contributes to O-mannosylation of E-cadherin, cellular adherence, and embryonic gastrulation

      Graham, J. B., Sunryd, J. C., Mathavan, K., Weir, E., Larsen, I. S. B., Halim, Adnan, Clausen, Henrik, Cousin, H., Alfandari, D. & Hebert, D. N., 2020, In: Molecular Biology of the Cell. 31, 3, p. 167-183 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. 2019
    16. Published

      A strategy for generating cancer-specific monoclonal antibodies to aberrant O-glycoproteins: identification of a novel dysadherin-Tn antibody

      Steentoft, C., Fuhrmann, M., Battisti, F., Van Coillie, Julie, Madsen, Thomas Daugbjerg, Campos, D., Halim, Adnan, Vakhrushev, Sergey, Joshi, Hiren Jitendra, Schreiber, H., Mandel, Ulla & Narimatsu, Yoshiki, 2019, In: Glycobiology. 29, 4, p. 307-319 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Exploring Regulation of Protein O-Glycosylation in Isogenic Human HEK293 Cells by Differential O-Glycoproteomics

      Narimatsu, Yoshiki, Joshi, Hiren Jitendra, Schjoldager, Katrine Ter-Borch Gram, Hintze, John, Halim, Adnan, Steentoft, C., Nason, R., Mandel, Ulla, Bennett, Eric Paul, Clausen, Henrik & Vakhrushev, Sergey, 2019, In: Molecular and Cellular Proteomics. 18, 7, p. 1396-1409

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Multiple distinct O-Mannosylation pathways in eukaryotes

      Larsen, I. S. B., Narimatsu, Yoshiki, Clausen, Henrik, Joshi, Hiren Jitendra & Halim, Adnan, 2019, In: Current Opinion in Structural Biology. 56, p. 171-178 8 p.

      Research output: Contribution to journal › Review › Research › peer-review

    19. 2018
    20. Published

      GlycoDomainViewer: A bioinformatics tool for contextual exploration of glycoproteomes

      Joshi, Hiren Jitendra, Jørgensen, A., Schjoldager, Katrine Ter-Borch Gram, Halim, Adnan, Dworkin, L. A., Steentoft, C., Wandall, Hans H., Clausen, Henrik & Vakhrushev, Sergey, 1 Mar 2018, In: Glycobiology. 28, 3, p. 131-136 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Site-specific O-glycosylation of N-terminal serine residues by polypeptide GalNAc-transferase 2 modulates human δ-opioid receptor turnover at the plasma membrane

      Lackman, J. J., Goth, C. K., Halim, Adnan, Vakhrushev, Sergey, Clausen, Henrik & Petäjä-Repo, U. E., Jan 2018, In: Cellular Signalling. 42, p. 184-193 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      SnapShot: O-Glycosylation Pathways across Kingdoms

      Joshi, Hiren Jitendra, Narimatsu, Yoshiki, Schjoldager, Katrine Ter-Borch Gram, Tytgat, H. L. P., Aebi, M., Clausen, Henrik & Halim, Adnan, Jan 2018, In: Cell. 172, 3, p. 632–632.e2

      Research output: Contribution to journal › Review › Research › peer-review

    23. Published

      Genetically engineered cell factories produce glycoengineered vaccines that target antigen-presenting cells and reduce antigen-specific T-cell reactivity

      Mathiesen, C. B. K., Carlsson, M. C., Brand, S., Möller, S. R., Idorn, M., Straten, P. T., Pedersen, Anders Elm, Dabelsteen, Sally, Halim, Adnan, Würtzen, P. A., Brimnes, J., Ipsen, H., Petersen, Bent L & Wandall, Hans H., 2018, In: Journal of Allergy and Clinical Immunology. 142, 6, p. 1983-1987

      Research output: Contribution to journal › Letter › Research › peer-review

    24. 2017
    25. Published

      Microbial glycoproteomics

      Halim, Adnan & Anonsen, J. H., Jun 2017, In: Current Opinion in Structural Biology. 44, p. 143-150 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Characterizing the O-glycosylation landscape of human plasma, platelets, and endothelial cells

      King-Smith, S. L., Joshi, Hiren Jitendra, Schjoldager, Katrine Ter-Borch Gram, Halim, Adnan, Madsen, Thomas Daugbjerg, Dziegiel, Morten Hanefeld, Woetmann, Anders , Vakhrushev, Sergey & Wandall, Hans H., 2017, In: Blood advances. 1, 7, p. 429-442 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Discovery of an O-mannosylation pathway selectively serving cadherins and protocadherins

      Larsen, I. S. B., Narimatsu, Yoshiki, Joshi, Hiren Jitendra, Siukstaite, L., Harrison, O. J., Brasch, J., Goodman, K. M., Hansen, Lars, Shapiro, L., Honig, B., Vakhrushev, Sergey, Clausen, Henrik & Halim, Adnan, 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 42, p. 11163-11168 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      Mammalian O-mannosylation of Cadherins and Plexins is Independent of Protein O-mannosyltransferase 1 and 2

      Larsen, I. S. B., Narimatsu, Yoshiki, Joshi, Hiren Jitendra, Yang, Zhang, Harrison, O. J., Brasch, J., Shapiro, L., Honig, B., Vakhrushev, Sergey, Clausen, Henrik & Halim, Adnan, 2017, In: The Journal of Biological Chemistry. 292, p. 11586-11598

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      NleB/SseK effectors from Citrobacter rodentium, Escherichia coli, and Salmonella enterica display distinct differences in host substrate specificity

      El Qaidi, S., Chen, K., Halim, Adnan, Siukstaite, L., Rueter, C., Hurtado-Guerrero, R., Clausen, Henrik & Hardwidge, P. R., 2017, In: The Journal of Biological Chemistry. 292, p. 11423-11430

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. 2016
    31. Published

      Mapping the O-Mannose Glycoproteome in Saccharomyces cerevisiae

      Neubert, P., Halim, Adnan, Zauser, M., Essig, A., Joshi, Hiren Jitendra, Zatorska, E., Larsen, I. S. B., Loibl, M., Castells-Ballester, J., Aebi, M., Clausen, Henrik & Strahl, S., Apr 2016, In: Molecular and Cellular Proteomics. 15, 4, p. 1323-37 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. 2015
    33. Published

      A systematic study of modulation of ADAM-mediated ectodomain shedding by site-specific O-glycosylation

      Goth, C. K., Halim, Adnan, Khetarpal, S. A., Rader, D. J., Clausen, Henrik & Schjoldager, Katrine Ter-Borch Gram, 24 Nov 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 47, p. 14623-8 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Published

      Shaping Glycans by DNA Scissors: Turning Glycosciences Into Lego Toying

      Clausen, Henrik, Schjoldager, Katrine Ter-Borch Gram, Yang, Zhang, Steentoft, C., Halim, Adnan, Bennett, E. & Vakhrushev, Sergey, Nov 2015, In: Glycobiology. 25, 11, p. 1233-1233 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

    35. Published

      Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions

      Rubinstein, R., Thu, C. A., Goodman, K. M., Wolcott, H. N., Bahna, F., Mannepalli, S., Ahlsen, G., Chevee, M., Halim, Adnan, Clausen, Henrik, Maniatis, T., Shapiro, L. & Honig, B., 22 Oct 2015, In: Cell. 163, 3, p. 629-42 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. Published

      Engineered CHO cells for production of diverse, homogeneous glycoproteins

      Yang, Zhang, Wang, S., Halim, Adnan, Schulz, M. A., Frödin, Morten, Rahman, S. H., Vester-Christensen, M. B., Behrens, C., Kristensen, C., Vakhrushev, Sergey, Bennett, Eric Paul, Wandall, Hans H. & Clausen, Henrik, 20 Jul 2015, In: Nature Biotechnology. 33, 8, p. 842-844 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    37. Published

      O-linked glycosylation of the mucin domain of the herpes simplex virus type 1-specific glycoprotein gC-1 is temporally regulated in a seed-and-spread manner

      Nordén, R., Halim, Adnan, Nyström, K., Bennett, Eric Paul, Mandel, Ulla, Olofsson, S., Nilsson, J. & Larson, G., 20 Feb 2015, In: The Journal of Biological Chemistry. 290, 8, p. 5078-91 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Published

      Advances in mass spectrometry driven O-glycoproteomics

      Levery, S. B., Steentoft, C., Halim, Adnan, Narimatsu, Yoshiki, Clausen, Henrik & Vakhrushev, Sergey, Jan 2015, In: B B A - Reviews on Cancer. 1850, 1, p. 33-42 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. Published

      Complex Regulation of Prolyl-4-Hydroxylases Impacts Root Hair Expansion

      Velasquez, S. M., Ricardi, M. M., Poulsen, C. P., Oikawa, A., Dilokpimol, A., Halim, A., Mangano, S., Denita Juarez, S. P., Marzol, E., Salgado Salter, J. D., Dorosz, J. G., Borassi, C., Möller, S. R., Buono, R., Ohsawa, Y., Matsuoka, K., Otegui, M. S., Scheller, H. V., Geshi, N., Petersen, B. L. & 2 others, Iusem, N. D. & Estevez, J. M., 2015, In: Molecular Plant. 8, 5, p. 734-46 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    40. Published

      Discovery of a nucleocytoplasmic O-mannose glycoproteome in yeast

      Halim, Adnan, Larsen, I. S. B., Neubert, P., Joshi, Hiren Jitendra, Petersen, Bent L, Vakhrushev, Sergey, Strahl, S. & Clausen, Henrik, 2015, In: Glycobiology. 25, 11, p. 1235 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

    41. Published

      Discovery of a nucleocytoplasmic O-mannose glycoproteome in yeast

      Halim, Adnan, Larsen, I. S. B., Neubert, P., Joshi, Hiren Jitendra, Petersen, Bent L, Vakhrushev, Sergey, Strahl, S. & Clausen, Henrik, 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 51, p. 15648-15653 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. Published

      Glycoproteomic analysis of seven major allergenic proteins reveals novel post-translational modifications

      Halim, Adnan, Carlsson, M. C., Mathiesen, C. B. K., Brand, S., Möller, S. R., Olsen, C. E., Vakhrushev, Sergey, Brimnes, J., Wurtzen, P. A., Ipsen, H., Petersen, Bent L & Wandall, Hans H., 2015, In: Molecular and Cellular Proteomics. 14, 1, p. 191-204 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. 2014

    44. Assignment of Saccharide Identities through analysis of oxonium ion fragmentation profiles in LC-MS/MS of glycopeptides

      Halim, Adnan, Westerlind, U., Pett, C., Schorlemer, M., Rüetschi, U., Brinkmalm, G., Sihlbom, C., Lengqvist, J., Larson, G. & Nilsson, J., 5 Dec 2014, In: Journal of Proteome Research. 13, 12, p. 6024-32 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    45. Published

      The GalNAc-type O-glycoproteome of CHO cells characterized by the SimpleCell strategy

      Yang, Zhang, Halim, Adnan, Narimatsu, Yoshiki, Joshi, Hiren Jitendra, Steentoft, C., Schjoldager, Katrine Ter-Borch Gram, Schulz, M. A., Sealover, N. R., Kayser, K. J., Bennett, Eric Paul, Levery, S. B., Vakhrushev, Sergey & Clausen, Henrik, Dec 2014, In: Molecular & Cellular Proteomics. 13, 12, p. 3224-3235 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    46. Published

      Characterization of Binding Epitopes of CA125 Monoclonal Antibodies

      da Silva, L. P. M., Narimatsu, Yoshiki, Halim, Adnan, Vieira Campos, D. A., Yang, Zhang, Tarp, M. P. A., Pereira, P. J. B., Mandel, Ulla, Bennett, Eric Paul, Vakhrushev, Sergey, Levery, S. B., David, L. & Clausen, Henrik, 3 Jul 2014, In: Journal of Proteome Research. 13, 7, p. 3349-59 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. Published

      Low Density Lipoprotein Receptor Class A Repeats Are O-Glycosylated in Linker Regions

      Pedersen, N. B., Wang, S., Narimatsu, Yoshiki, Yang, Zhang, Halim, Adnan, Schjoldager, Katrine Ter-Borch Gram, Madsen, Thomas Daugbjerg, Seidah, N. G., Bennett, Eric Paul, Levery, S. B. & Clausen, Henrik, 20 Jun 2014, In: The Journal of Biological Chemistry. 289, 25, p. 17312-17324 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. LC-MS/MS characterization of combined glycogenin-1 and glycogenin-2 enzymatic activities reveals their self-glucosylation preferences

      Nilsson, J., Halim, Adnan, Larsson, E., Moslemi, A., Oldfors, A., Larson, G. & Nilsson, J., Feb 2014, In: B B A - Reviews on Cancer. 1844, 2, p. 398-405 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    49. 2013
    50. Published

      Mining the O-mannose glycoproteome reveals cadherins as major O-mannosylated glycoproteins

      Vester-Christensen, M. B., Halim, Adnan, Joshi, Hiren Jitendra, Steentoft, C., Bennett, Eric Paul, Levery, S. B., Vakhrushev, Sergey & Clausen, Henrik, 24 Dec 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 52, p. 21018-23 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    ID: 40443472