Jan Gorodkin

Jan Gorodkin

Professor

Member of:


    Publication year:
    All
    1 - 25 out of 151Page size: 25
    1. 2003
    2. Published

      SRPDB: Signal Recognition Particle Database

      Rosenblad, M. A., Gorodkin, Jan, Knudsen, B., Zwieb, C. & Samuelsson, T., 2003, In: Nucleic Acids Research. 31, 1, p. 363-364 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      tmRDB (tmRNA database)

      Zwieb, C., Gorodkin, Jan, Knudsen, B., Burks, J. & Wower, J., 2003, In: Nucleic Acids Research. 31, 1, p. 446-447 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. 2004
    5. Published

      Comparing two K-category assignments by a K-category correlation coefficient

      Gorodkin, Jan, 2004, In: Computational Biology and Chemistry. 28, 5-6, p. 367-374 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Evolutionary rate variation and RNA secondary structure prediction

      Knudsen, B., Andersen, E. S., Damgaard, C., Kjems, J. & Gorodkin, Jan, 2004, In: Computational Biology and Chemistry. 28, 3, p. 219-226 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      RNA interactions in the 5' region of the HIV-1 genome

      Damgaard, C. K., Andersen, E. S., Knudsen, B., Gorodkin, Jan & Kjems, J., 2004, In: Journal of Molecular Biology. 336, 2, p. 369-379 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. 2005
    9. Published

      A high-resolution comparative map between pig chromosome 17 and human chromosomes 4, 8, and 20: Identification of synteny breakpoints

      Lahbib-Mansais, Y., Karlskov-Mortensen, Peter, Mompart, F., Milan, D., Jørgensen, Claus Bøttcher, Cirera, Susanna, Gorodkin, Jan, Faraut, T., Yerle, M. & Fredholm, Merete, 2005, In: Genomics. 86, 4, p. 405-413 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Mapping and expression studies of the mir17-92 cluster on pig chromosome 11

      Sawera, M., Gorodkin, Jan, Cirera, Susanna & Fredholm, Merete, 2005, In: Mammalian Genome. 16, 8, p. 594-598 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%

      Havgaard, Jakob Hull, Lyngsø, R. B., Stormo, G. D. & Gorodkin, Jan, 2005, In: Bioinformatics. 21, 9, p. 1815-1824 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing

      Wernersson, R., Schierup, M. H., Jørgensen, F. G., Gorodkin, J., Panitz, F., Stærfeldt, H-H., Christensen, O. F., Mailund, T., Hornshøj, H., Klein, A., Wang, J., Liu, B., Hu, S., Dong, W., Li, W., Wong, G. K. S., Yu, J., Wang, J., Bendixen, C., Fredholm, M. & 3 others, Brunak, S., Yang, H. & Bolund, L., 2005, In: BMC Genomics. 70, 6, p. 1-7 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Pigs in sequence space: a 0.66X coverage Sino-Danish pig genome survey

      Rasmus, W., Schierup, M. H., Jørgensen, F. G., Gorodkin, Jan, Panitz, F., Stærfeldt, H., Christensen, O. F., Mailund, T., Hornshøj, H., Klein, A., Wang, J., Wong, G. K. S., Yu, J., Wang, J., Bendixen, C., Fredholm, Merete, Brunak, S., Yang, H. & Bolund, L., 2005. 1 p.

      Research output: Contribution to conference › Poster › Research

    14. Published

      The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search

      Havgaard, Jakob Hull, Lyngsø, R. B. & Gorodkin, Jan, 2005, In: Nucleic Acids Research. 33, p. W650-W653 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. 2006
    16. Published

      Linkage mapping of gene-associated SNPs to pig chromosome 11

      Sawera, M., Cirera, Susanna, Jørgensen, Claus Bøttcher, Gorodkin, Jan & Fredholm, Merete, 2006, In: Animal Genetics. 37, 3, p. 199-204 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      MicroRNA sequence motifs reveal asymmetry between the stem arms

      Gorodkin, Jan, Havgaard, Jakob Hull, Ensterö, M., Sawera, M., Jensen, P., Öhman, M. & Fredholm, Merete, 2006, In: Computational Biology and Chemistry. 30, 4, p. 249-254 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      The tmRDB and SRPDB resources

      Andersen, E. S., Rosenblad, M. A., Larsen, N., Westergaard, Jesper Cairo, Burks, J., Wower, I. K., Wower, J., Gorodkin, Jan, Samuelsson, T. & Zwieb, C., 2006, In: Nucleic Acids Research. 34, p. D163-D168 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

      Torarinsson, E., Sawera, M., Havgaard, Jakob Hull, Fredholm, Merete & Gorodkin, Jan, 2006, In: Genome Research. 16, 7, p. 885-889 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. 2007
    21. Published

      Detection of RNA structures in porcine EST data and related mammals

      Seemann, Ernst Stefan, Gilchrist, M. J., Hofacker, I. L., Stadler, P. F. & Gorodkin, Jan, 2007, In: BMC Genomics. 8, 316, 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      EST analysis on pig mitochondria reveal novel expression differences between developmental and adult tissues

      Scheibye-Alsing, K., Cirera, Susanna, Gilchrist, M. J., Fredholm, Merete & Gorodkin, Jan, 2007, In: BMC Genomics. 8, 367, 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix

      Havgaard, Jakob Hull, Torarinsson, E. & Gorodkin, Jan, 2007, In: PLoS Computational Biology. 3, 10, p. 1896-1908 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Identification of 10 882 porcine microsatellite sequences and virtual mapping of 4528 of these sequences

      Karlskov-Mortensen, Peter, Hu, Z. L., Gorodkin, Jan, Reecy, J. M. & Fredholm, Merete, 2007, In: Animal Genetics. 38, 4, p. 401-405 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Multiple structural alignment and clustering of RNA sequences: sequence analysis

      Torarinsson, E., Havgaard, Jakob Hull & Gorodkin, Jan, 2007, In: Bioinformatics. 23, 8, p. 926-32 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

      Gorodkin, J., Cirera, S., Hedegaard, J., Gilchrist, M. J., Panitz, F., Jørgensen, C., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T., Nielsen, B., Havgaard, J. H., Rosenkilde, C., Wang, J., Li, H., Li, R., Liu, B., Hu, S., Dong, W. & 16 others, Li, W., Yu, J., Wang, J., Staefeldt, H., Wernersson, R., Madsen, L. B., Thomsen, B. S., Hornshøj, H., Bujie, Z., Wang, X., Wang, X., Bolund, L., Brunak, Søren, Yang, H., Bendixen, C. & Fredholm, Merete, 2007, In: Genome Biology. 8, R45, p. R45 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Principles and limitations of computational microRNA gene and target finding

      Lindow, M. & Gorodkin, Jan, 2007, In: DNA and Cell Biology. 26, 5, p. 339-351 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation

      Panitz, F., Stengaard, H., Hornshøj, H., Gorodkin, J., Hedegaard, J., Cirera, S., Thomsen, B. S., Madsen, L. B., Høj, A., Vingborg, R., Zahn, B., Wang, X., Wang, X., Wernersson, R., Jørgensen, C. B., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T. & 5 others, Nielsen, B., Havgaard, Jakob Hull, Brunak, Søren, Fredholm, Merete & Bendixen, C., 2007, In: Bioinformatics. 23, 13, p. i387-91 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      Semiautomated improvement of RNA alignments

      Andersen, E. S., Lind-Thomsen, A., Knudsen, B., Kristensen, S. E., Havgaard, Jakob Hull, Torarinsson, E., Larsen, N., Zwieb, C., Sestoft, P., Kjems, J. & Gorodkin, Jan, 2007, In: RNA: A publication of the RNA Society. 13, 11, p. 1850-1859 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. 2008
    31. Published

      Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions

      Þórarinsson, E., Yao, Z., Wiklund, E. D., Bramsen, J. B., Hansen, C., Kjems, J., Tommerup, Niels, Ruzzo, W. L. & Gorodkin, Jan, 2008, In: Genome Research. 18, 2, p. 242-251 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    Previous 1 2 3 4 5 6 7 Next

    ID: 4356276