Jan Gorodkin

Jan Gorodkin

Professor

  • Animal Genetics, Bioinformatics and Breeding

    Thorvaldsensvej 57, 1870 Frederiksberg C, 1-34, Building: A106

    Phone: +45 23 37 56 67Mobile: +45 23 37 56 67

  1. 2020
  2. Published

    Good guide, bad guide: spacer sequence-dependent cleavage efficiency of Cas12a

    Creutzburg, S. C. A., Wu, W. Y., Mohanraju, P., Swartjes, T., Alkan, F., Gorodkin, Jan, Staals, R. H. J. & van der Oost, J., 2020, In : Nucleic Acids Research. 48, 6, p. 3228-3243 16 p.

    Research output: Contribution to journalJournal article

  3. E-pub ahead of print

    Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities

    Sundfeld, D., Teodoro, G., Havgaard, Jakob Hull, Gorodkin, Jan & Melo, A. C. M. A., 2020, In : Concurrency Computation. e5468.

    Research output: Contribution to journalJournal article

  4. 2019
  5. Published

    The developing Entorhinal cortex - a cellular map

    Bergmann, Tobias Borgtoft, Liu, Y., Lee, J., Pfisterer, U. G., Handfield, L., Asenjo Martinez, Andrea, Seemann, Ernst Stefan, Witter, M., Khodosevich, Konstantin, Gorodkin, Jan, Hemberg, M., Pers, Tune H & Hall, Vanessa Jane, 25 Nov 2019. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceCommunication

  6. Published

    A splice-site variant in the lncRNA gene RP1-140A9.1 cosegregates in the large Volkmann cataract family

    Eiberg, Hans Rudolf Lytchoff, Mikkelsen, Annemette Friis, Bak, Mads, Tommerup, Niels, Lund, A. M., Wenzel, Anne, Sabarinathan, R., Gorodkin, Jan, Bang-Berthelsen, C. H. & Hansen, Lars, 2019, In : Molecular Vision. 25, p. 1-11 11 p.

    Research output: Contribution to journalJournal article

  7. Published

    Cytoscape stringApp: Network analysis and visualization of proteomics data

    Doncheva, Nadezhda Tsankova, Morris, J., Gorodkin, Jan & Jensen, Lars Juhl, 2019, In : Journal of Proteome Research. 18, 2, p. 623-632

    Research output: Contribution to journalJournal article

  8. Published
  9. Published

    Inferring disease-associated long non-coding RNAs using genome - wide tissue expression profiles

    Pan, X., Jensen, Lars Juhl & Gorodkin, Jan, 2019, In : Bioinformatics. 35, 9, p. 1494-1502 9 p.

    Research output: Contribution to journalJournal article

  10. Published

    Production of stellate cells from induced pluripotent stem cells to study Alzheimer's disease pathology

    Mogus, L., Bergmann, Tobias Borgtoft, Liu, Y., Lee, J., Pfisterer, U. G., Handfield, L., Asenjo Martinez, Andrea, Seemann, Ernst Stefan, Witter, M., Khodosevich, Konstantin, Gorodkin, Jan, Hemberg, M., Pers, Tune H & Hall, Vanessa Jane, 2019. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceCommunication

  11. Published

    RNAcentral: a hub of information for non-coding RNA sequences

    The RNAcentral Constortium , T., Gorodkin, Jan & Seemann, Ernst Stefan, 2019, In : Nucleic Acids Research. 47, D1, p. D221–D229

    Research output: Contribution to journalJournal article

  12. Published

    Sandwich cortial lamination and single-cell analysis decodes the developing spatial processing system

    Liu, Y., Bergmann, Tobias Borgtoft, Lee, J., Pfisterer, U. G., Handfield, L., Mori, Yuki, Asenjo Martinez, Andrea, Lisa Vargas, I., Seemann, Ernst Stefan, Lee, J. T. H., Patikis, N., Peralvo Vidal, Juan Miguel, Pihl, M., Kornum, Birgitte Rahbek, Thomsen, Preben Dybdahl, Hyttel, Poul, Witter, M., Khodosevich, Konstantin, Gorodkin, Jan, Hemberg, M., Pers, Tune H & Hall, Vanessa Jane, 2019. 45 p.

    Research output: Contribution to conferencePaperCommunication

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