Jakob Hull Havgaard

Jakob Hull Havgaard

Associate Professor

ORCID: 0000-0002-4816-814X

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  1. Published

    MicroRNA sequence motifs reveal asymmetry between the stem arms

    Gorodkin, Jan, Havgaard, Jakob Hull, Ensterö, M., Sawera, M., Jensen, P., Öhman, M. & Fredholm, Merete, 2006, In: Computational Biology and Chemistry. 30, 4, p. 249-254 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Multiple structural alignment and clustering of RNA sequences: sequence analysis

    Torarinsson, E., Havgaard, Jakob Hull & Gorodkin, Jan, 2007, In: Bioinformatics. 23, 8, p. 926-32 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Optimizing RNA structures by sequence extensions using RNAcop

    Hecker, N., Christensen-Dalsgaard, M., Seemann, Ernst Stefan, Havgaard, Jakob Hull, Stadler, P. F., Hofacker, I. L., Nielsen, Henrik & Gorodkin, Jan, 2015, In: Nucleic Acids Research. 43, 17, p. 8135-8145 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%

    Havgaard, Jakob Hull, Lyngsø, R. B., Stormo, G. D. & Gorodkin, Jan, 2005, In: Bioinformatics. 21, 9, p. 1815-1824 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

    Gorodkin, J., Cirera, S., Hedegaard, J., Gilchrist, M. J., Panitz, F., Jørgensen, C., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T., Nielsen, B., Havgaard, J. H., Rosenkilde, C., Wang, J., Li, H., Li, R., Liu, B., Hu, S., Dong, W. & 16 others, Li, W., Yu, J., Wang, J., Staefeldt, H., Wernersson, R., Madsen, L. B., Thomsen, B. S., Hornshøj, H., Bujie, Z., Wang, X., Wang, X., Bolund, L., Brunak, Søren, Yang, H., Bendixen, C. & Fredholm, Merete, 2007, In: Genome Biology. 8, R45, p. R45 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    RNA Structural Alignments, Part I: Sankoff-Based Approaches for Structural Alignments

    Havgaard, Jakob Hull & Gorodkin, Jan, 2014, RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods. Gorodkin, J. & Ruzzo, W. L. (eds.). p. 275-90 16 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  7. Published

    RNAscClust: Clustering RNA sequences using structure conservation and graph based motifs

    Miladi, M., Junge, A., Costa, F., Seemann, Ernst Stefan, Havgaard, Jakob Hull, Gorodkin, Jan & Backofen, R., 2017, In: Bioinformatics. 33, 14, p. 2089-2096 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation

    Panitz, F., Stengaard, H., Hornshøj, H., Gorodkin, J., Hedegaard, J., Cirera, S., Thomsen, B. S., Madsen, L. B., Høj, A., Vingborg, R., Zahn, B., Wang, X., Wang, X., Wernersson, R., Jørgensen, C. B., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T. & 5 others, Nielsen, B., Havgaard, Jakob Hull, Brunak, Søren, Fredholm, Merete & Bendixen, C., 2007, In: Bioinformatics. 23, 13, p. i387-91 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Semiautomated improvement of RNA alignments

    Andersen, E. S., Lind-Thomsen, A., Knudsen, B., Kristensen, S. E., Havgaard, Jakob Hull, Torarinsson, E., Larsen, N., Zwieb, C., Sestoft, P., Kjems, J. & Gorodkin, Jan, 2007, In: RNA: A publication of the RNA Society. 13, 11, p. 1850-1859 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Structural alignment of RNA with FOLDALIGN

    Havgaard, Jakob Hull, 2007, Frederiksberg: Center for Skov, Landskab og Planlægning/Københavns Universitet. 128 p.

    Research output: Book/Report › Ph.D. thesis › Research

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