Jakob Hull Havgaard

Jakob Hull Havgaard

Associate Professor

  • Animal Genetics, Bioinformatics and Breeding

    Grønnegårdsvej 3, 1870 Frederiksberg C, 1-61, Building: A 214

    Phone: +45 35 32 01 39

  1. 2020
  2. Published

    Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities

    Sundfeld, D., Teodoro, G., Havgaard, Jakob Hull, Gorodkin, Jan & Melo, A. C. M. A., 2020, In : Concurrency Computation. 32, 10, e5468.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. 2019
  4. Published
  5. 2018
  6. Published

    CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters

    Alkan, F., Wenzel, Anne, Anthon, Christian, Havgaard, Jakob Hull & Gorodkin, Jan, 2018, In : Genome Biology. 19, 13 p., 177.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. 2017
  8. Published

    Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots

    Kato, Y., Gorodkin, Jan & Havgaard, Jakob Hull, Dec 2017, In : BMC Genomics. 18, 1, 935.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Assessing the miRNA sponge potential of RUNX1T1 in t(8;21) acute myeloid leukemia

    Junge, A., Zandi, R., Havgaard, Jakob Hull, Gorodkin, Jan & Cowland, J. B., 2017, In : Gene. 615, p. 35-40 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment

    Sundfeld, D., Havgaard, Jakob Hull, Gorodkin, Jan & De Melo, A. C. M. A., 2017, Proceedings: 2017 25th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, PDP 2017. IEEE, p. 295-302 8 p. 7912663

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  11. Published

    RNAscClust: Clustering RNA sequences using structure conservation and graph based motifs

    Miladi, M., Junge, A., Costa, F., Seemann, Ernst Stefan, Havgaard, Jakob Hull, Gorodkin, Jan & Backofen, R., 2017, In : Bioinformatics. 33, 14, p. 2089-2096 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. 2016
  13. Published

    Adipocyte gene expression and DNA methylation patterns differ significantly between lean and obese pigs

    Jacobsen, Mette Juul, Havgaard, Jakob Hull, Mentzel, Caroline M. Junker, Sørensen, P. M., xfd783, xfd783, Anthon, Christian, Karlskov-Mortensen, Peter, Bruun, Camilla Vibeke Sichlau, Cirera, Susanna, Gorodkin, Jan, Jørgensen, Claus Bøttcher, Barrès, Romain & Fredholm, Merete, 9 Nov 2016, In : Journal of Animal Science. 94, Supplement 4, p. 46-47 2 p., P2019.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  14. Published

    Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment

    Sundfeld, D., Havgaard, Jakob Hull, de Melo, A. C. M. A. & Gorodkin, Jan, 2016, In : Bioinformatics. 32, 8, p. 1238-1240 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. 2015
  16. Published

    Optimizing RNA structures by sequence extensions using RNAcop

    Hecker, N., Christensen-Dalsgaard, M., Seemann, Ernst Stefan, Havgaard, Jakob Hull, Stadler, P. F., Hofacker, I. L., Nielsen, Henrik & Gorodkin, Jan, 2015, In : Nucleic Acids Research. 43, 17, p. 8135-8145 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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