Jakob Hull Havgaard
Associate Professor
Preclinical Disease Biology
Ridebanevej 9, 1870 Frederiksberg C
- Published
Adipocyte gene expression and DNA methylation patterns differ significantly between lean and obese pigs
Jacobsen, M. J., Havgaard, Jakob Hull, Mentzel, Caroline M. Junker, Sørensen, P. M., Pundhir, Sachin, Anthon, Christian, Karlskov-Mortensen, Peter, Bruun, Camilla Vibeke Sichlau, Cirera, Susanna, Gorodkin, Jan, Jørgensen, Claus Bøttcher, Barrès, Romain & Fredholm, Merete, 9 Nov 2016, In: Journal of Animal Science. 94, Supplement 4, p. 46-47 2 p., P2019.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Epigenetic and Transcriptomic Characterization of Pure Adipocyte Fractions From Obese Pigs Identifies Candidate Pathways Controlling Metabolism
Jacobsen, M. J., Havgaard, Jakob Hull, Anthon, Christian, Mentzel, Caroline M. Junker, Cirera, Susanna, Krogh, P. M., Pundhir, Sachin, Karlskov-Mortensen, Peter, Bruun, C. S., Lesnik, P., Guerin, M., Gorodkin, Jan, Jørgensen, Claus Bøttcher, Fredholm, Merete & Barrès, Romain, 2019, In: Frontiers in Genetics. 10, 13 p., 1268.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Optimizing RNA structures by sequence extensions using RNAcop
Hecker, N., Christensen-Dalsgaard, M., Seemann, Ernst Stefan, Havgaard, Jakob Hull, Stadler, P. F., Hofacker, I. L., Nielsen, Henrik & Gorodkin, Jan, 2015, In: Nucleic Acids Research. 43, 17, p. 8135-8145 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix
Havgaard, Jakob Hull, Torarinsson, E. & Gorodkin, Jan, 2007, In: PLoS Computational Biology. 3, 10, p. 1896-1908 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative ncRNA gene and structure prediction using Foldalign and FoldalignM
Havgaard, Jakob Hull, Kaur, S. & Gorodkin, Jan, 2012, In: Current Protocols in Bioinformatics. 39, p. 12.11.1-12.11.15 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RNA Structural Alignments, Part I: Sankoff-Based Approaches for Structural Alignments
Havgaard, Jakob Hull & Gorodkin, Jan, 2014, RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods. Gorodkin, J. & Ruzzo, W. L. (eds.). p. 275-90 16 p. (Methods in molecular biology (Clifton, N.J.)).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%
Havgaard, Jakob Hull, Lyngsø, R. B., Stormo, G. D. & Gorodkin, Jan, 2005, In: Bioinformatics. 21, 9, p. 1815-1824 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search
Havgaard, Jakob Hull, Lyngsø, R. B. & Gorodkin, Jan, 2005, In: Nucleic Acids Research. 33, p. W650-W653 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structural alignment of RNA with FOLDALIGN
Havgaard, Jakob Hull, 2007, Frederiksberg: Center for Skov, Landskab og Planlægning/Københavns Universitet. 128 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
Gorodkin, J., Cirera, S., Hedegaard, J., Gilchrist, M. J., Panitz, F., Jørgensen, C., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T., Nielsen, B., Havgaard, J. H., Rosenkilde, C., Wang, J., Li, H., Li, R., Liu, B., Hu, S., Dong, W. & 16 others, , 2007, In: Genome Biology. 8, R45, p. R45 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 4240647
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2867
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Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1258
downloads
Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
879
downloads
Structured RNAs and synteny regions in the pig genome
Research output: Contribution to journal › Journal article › Research › peer-review
Published