Nicolai Krogh
Assistant Professor
Transcription, RNA, and Gene Medicine Program
Blegdamsvej 3
2200 København N.
- 2024
- Published
GPATCH4 regulates rRNA and snRNA 2′-O-methylation in both DHX15-dependent and DHX15-independent manners
Kanwal, N., Krogh, Nicolai, Memet, I., Lemus-Diaz, N., Thomé, C. C., Welp, L. M., Mizi, A., Hackert, P., Papantonis, A., Urlaub, H., Nielsen, Henrik, Bohnsack, K. E. & Bohnsack, M. T., 2024, In: Nucleic Acids Research. 52, 4, p. 1953-1974 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Loss of N-terminal acetyltransferase A activity induces thermally unstable ribosomal proteins and increases their turnover in Saccharomyces cerevisiae
Hernández Guzmán, Ulises, Aksnes, H., Ree, R., Krogh, Nicolai, Jakobsson, M. E., Jensen, Lars Juhl, Arnesen, T. & Olsen, Jesper Velgaard, 2023, In: Nature Communications. 14, 4517.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ribosomal RNA 2′-O-methylation dynamics impact cell fate decisions
Häfner, Sophia Julia, Jansson, Martin David, Altinel, Kübra, Andersen, Kasper Langebjerg, Abay-Nørgaard, Zehra Caldwell, Ménard, Patrice, Fontenas, M., Sørensen, Daniel Madriz, Gay, David Michael, Arendrup, Frederic Schrøder, Tehler, D., Krogh, Nicolai, Nielsen, Henrik, Kraushar, M. L., Kirkeby, Agnete & Lund, Anders H., 2023, In: Developmental Cell. 58, 17, p. 1593-1609.e9Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Spatial-proteomics reveal in-vivo phospho-signaling dynamics at subcellular resolution
Martinez Del Val, Ana, Bekker-Jensen, D. B., Steigerwald, S., Mehta, A., Tran, T., Sikorski, K., Torres Vega, Estefania, Kwasniewicz, E., Brynjólfsdóttir, S. H., Frankel, Lisa, Kjøbsted, Rasmus, Krogh, Nicolai, Lundby, Alicia, Bekker-Jensen, Simon Holst, Lund-Johansen, F. & Olsen, Jesper Velgaard, 2 Feb 2021, bioRxiv, p. 1-34, 34 p.Research output: Working paper › Preprint › Research
- Published
Impaired Vitamin D Signaling in T Cells From a Family With Hereditary Vitamin D Resistant Rickets
Al-Jaberi, F. A. H., Kongsbak-Wismann, Martin, Aguayo-Orozco, A., Krogh, Nicolai, Buus, Terkild Brink, Lopez, D. V., Rode, A. K. O., Gravesen, Eva, Ølgaard, Klaus, Brunak, Søren, Woetmann, Anders , Ødum, Niels, Bonefeld, Charlotte Menne & Geisler, Carsten, 2021, In: Frontiers in Immunology. 12, 11 p., 684015.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RNA helicase-mediated regulation of snoRNP dynamics on pre-ribosomes and rRNA 2'-O-methylation
Aquino, G. R. R., Krogh, Nicolai, Hackert, P., Martin, R., Gallesio, J. D., van Nues, R. W., Schneider, C., Watkins, N. J., Nielsen, Henrik, Bohnsack, K. E. & Bohnsack, M. T., 2021, In: Nucleic Acids Research. 49, 7, p. 4066-4084 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Regulation of translation by site-specific ribosomal RNA methylation
Jansson, Martin David, Häfner, Sophia Julia, Altinel, Kübra, Tehler, D. E., Krogh, Nicolai, Jakobsen, Emil, Andersen, Jens Velde, Andersen, Kasper Langebjerg, Schoof, E., Ménard, Patrice, Nielsen, Henrik & Lund, Anders H., 2021, In: Nature Structural and Molecular Biology. 28, 11, p. 889-899Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial-proteomics reveals phospho-signaling dynamics at subcellular resolution
Martinez Del Val, Ana, Bekker-Jensen, D. B., Steigerwald, S., Koenig, Claire, Østergaard, Ole, Mehta, A., Tran, T., Sikorski, K., Torres Vega, Estefania, Kwasniewicz, E., Brynjólfsdóttir, S. H., Frankel, Lisa, Kjøbsted, Rasmus, Krogh, Nicolai, Lundby, Alicia, Bekker-Jensen, Simon Holst, Lund-Johansen, F. & Olsen, Jesper Velgaard, 2021, In: Nature Communications. 12, 1, 17 p., 7113.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Lariat Capping Ribozyme
Nielsen, Henrik, Krogh, Nicolai, Masquida, B. & Johansen, S. D., 2021, Ribozymes: Principles, Methods, Applications. Müller, S., Masquida, B. & Winkler, W. (eds.). Wiley, Vol. 2. p. 117-142Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The RNA helicase Dbp7 promotes domain V/VI compaction and stabilization of inter-domain interactions during early 60S assembly
Aquino, G. R. R., Hackert, P., Krogh, Nicolai, Pan, K. T., Jaafar, M., Henras, A. K., Nielsen, Henrik, Urlaub, H., Bohnsack, K. E. & Bohnsack, M. T., 2021, In: Nature Communications. 12, 6152.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The small Cajal body-specific RNA 15 (SCARNA15) directs p53 and redox homeostasis via selective splicing in cancer cells
Beneventi, G., Munita, R., Cao Thi Ngoc, P., Madej, M., Cieśla, M., Muthukumar, S., Krogh, Nicolai, Nielsen, Henrik, Swaminathan, V. & Bellodi, C., 2021, In: NAR Cancer. 3, 3, zcab026.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Use of a Lariat Capping Ribozyme to Study Cap Function In Vivo
Pietschmann, M., Tempel, G., Halladjian, Maral, Krogh, Nicolai & Nielsen, Henrik, 2021, Ribozymes: Methods and Protocols. Humana Press, Vol. 2167. p. 271-285 15 p. (Methods in Molecular Biology, Vol. 2167).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- 2020
- Published
Profiling of ribose methylations in ribosomal RNA from diffuse large B-cell lymphoma patients for evaluation of ribosomes as drug targets
Krogh, Nicolai, Asmar, F., Côme, Christophe Roger Michel, Fibiger Munch-Petersen, H., Grønbæk, Kirsten & Nielsen, Henrik, 4 Dec 2020, In: NAR Cancer. 2, 4, 11 p., zcaa035.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The shift from early to late types of ribosomes in zebrafish development involves changes at a subset of rRNA 2'-O-Me sites
Ramachandran, S., Krogh, Nicolai, Jørgensen, T. E., Johansen, S. D., Nielsen, Henrik & Babiak, I., Dec 2020, In: R N A. 26, 12, p. 1919-1934 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Developmental changes of rRNA ribose methylations in the mouse
Hebras, J., Krogh, Nicolai, Marty, V., Nielsen, Henrik & Cavaillé, J., 2020, In: RNA Biology. 17, 1, p. 150-164 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RRP7A links primary microcephaly to dysfunction of ribosome biogenesis, resorption of primary cilia, and neurogenesis
Farooq, M., Lindbæk, L., Krogh, N., Doganli, C., Keller, C., Mönnich, M., Gonçalves, A. B., Sakthivel, S., Mang, Y., Fatima, A., Andersen, V. S., Hussain, M. S., Eiberg, H., Hansen, L., Kjaer, K. W., Gopalakrishnan, J., Pedersen, L. B., Møllgård, K., Nielsen, H., Baig, S. M. & 3 others, , 2020, In: Nature Communications. 11, 16 p., 5816.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Re-assessment of the involvement of snord115 in the serotonin 2c receptor pathway in a genetically relevant mouse model
Hebras, J., Marty, V., Personnaz, J., Mercier, P., Krogh, Nicolai, Nielsen, Henrik, Aguirrebengoa, M., Seitz, H., Pradère, J., Guiard , B. P. & Cavaillé, J., 2020, In: eLife. 9, p. 1-34 34 p., e60862.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ZAKα Recognizes Stalled Ribosomes through Partially Redundant Sensor Domains
Vind, Anna Constance, Snieckute, Goda, Blasius, Melanie, Tiedje, C., Krogh, Nicolai, Bekker-Jensen, D. B., Andersen, Kasper Langebjerg, Nordgaard, C., Tollenaere, M. A. X., Lund, Anders H., Olsen, Jesper Velgaard, Nielsen, Henrik & Bekker-Jensen, Simon Holst, 2020, In: Molecular Cell. 78, 4, p. 700-713.E7Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Sequencing-based methods for detection and quantitation of ribose methylations in RNA
Krogh, Nicolai & Nielsen, Henrik, 2019, In: Methods. 156, p. 5-15Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
SIRT7-Dependent Deacetylation of Fibrillarin Controls Histone H2A Methylation and rRNA Synthesis during the Cell Cycle
Iyer-Bierhoff, A., Krogh, Nicolai, Tessarz, P., Ruppert, T., Nielsen, Henrik & Grummt, I., 2018, In: Cell Reports. 25, 11, p. 2946-2954Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The No-Go and Nonsense-Mediated RNA Decay Pathways Are Regulated by Inflammatory Cytokines in Insulin-Producing Cells and Human Islets and Determine β-Cell Insulin Biosynthesis and Survival
Ghiasi, S. M., Krogh, Nicolai, Tyrberg, B. & Mandrup-Poulsen, Thomas, 2018, In: Diabetes. 67, 10, p. 2019-2037 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
RNA modifications contribute a new level of specialization to ribosomes and spliceosomes in yeast and human
Krogh, Nicolai, 9 Nov 2017, Copenhagen University.Research output: Book/Report › Ph.D. thesis › Research
- Published
Lariat capping as a tool to manipulate the 5' end of individual yeast mRNA species in vivo
Krogh, Nicolai, Pietschmann, M., Schmid, M., Jensen, T. H. & Nielsen, Henrik, 2017, In: R N A. 23, 5, p. 683-695 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RiboMeth-seq: Profiling of 2'-O-Me in RNA
Krogh, Nicolai, Birkedal, U. & Nielsen, Henrik, 2017, RNA Methylation. Springer, Vol. 1562. p. 189-209 21 p. (Methods in Molecular Biology, Vol. 1562).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Substoichiometric ribose methylations in spliceosomal snRNAs
Krogh, Nicolai, Kongsbak-Wismann, Martin, Geisler, Carsten & Nielsen, Henrik, 2017, In: Organic and Biomolecular Chemistry. 15, 42, p. 8872-8876 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
Profiling of 2'-O-Me in human rRNA reveals a subset of fractionally modified positions and provides evidence for ribosome heterogeneity
Krogh, Nicolai, Jansson, Martin David, Häfner, Sophia Julia, Tehler, D., Birkedal, U., Christensen-Dalsgaard, M., Lund, Anders H. & Nielsen, Henrik, 19 Sep 2016, In: Nucleic Acids Research. 44, 16, p. 7884-7895Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Methods for Determination of 2′-O-Me in RNA
Birkedal, U., Krogh, Nicolai, Andersen, Kasper Langebjerg & Nielsen, Henrik, 30 Jul 2016, Modified Nucleic Acids in Biology and Medicine. Jurga, S., Erdmann, V. A. & Barciszewski, J. (eds.). switzerland: Springer Science+Business Media, p. 187-205 (RNA Technologies).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- 2015
- Published
Profiling of Ribose Methylations in RNA by High-Throughput Sequencing
Birkedal, U., Christensen-Dalsgaard, M., Krogh, Nicolai, Radhakrishnan, S., Gorodkin, Jan & Nielsen, Henrik, 7 Jan 2015, In: Angewandte Chemie (International ed. in English). 54, 2, p. 451-455 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 32060428
Most downloads
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156
downloads
SIRT7-Dependent Deacetylation of Fibrillarin Controls Histone H2A Methylation and rRNA Synthesis during the Cell Cycle
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
95
downloads
Lariat capping as a tool to manipulate the 5' end of individual yeast mRNA species in vivo
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
67
downloads
The shift from early to late types of ribosomes in zebrafish development involves changes at a subset of rRNA 2'-O-Me sites
Research output: Contribution to journal › Journal article › Research › peer-review
Published