Lars Juhl Jensen

Lars Juhl Jensen

Professor, Group Leader, Professor

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    ORCID: 0000-0001-7885-715X

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    1. Published

      Quantitative metaproteomics of medieval dental calculus reveals individual oral health status

      Jersie-Christensen, R. R., Lanigan, Liam Thomas, Lyon, D., Mackie, Meaghan, Midjord-Belstrøm, Daniel, Kelstrup, C. D., Fotaki, Anna Katerina, Willerslev, Eske, Lynnerup, Niels, Jensen, Lars Juhl, Cappellini, Enrico & Olsen, Jesper Velgaard, 2018, In: Nature Communications. 9, p. 1-12 4744.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Sequence-based feature prediction and annotation of proteins

      Juncker, A., Jensen, Lars Juhl, Pierleoni, A., Bernsel, A., Tress, M. L., Bork, P., von Heijne, G., Valencia, A., Ouzounis, C. A., Casadio, R. & Brunak, S., 2009, In: Genome Biology (Online Edition). 10, 2, p. 206

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      CoCoScore: Context-aware co-occurrence scoring for text mining applications using distant supervision

      Junge, A. & Jensen, Lars Juhl, 2019, In: Bioinformatics. 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      RAIN: RNA-protein Association and Interaction Networks

      Junge, A., Refsgaard, J. C., Garde, C., Pan, X., Santos, A., Alkan, F., Anthon, Christian, von Mering, C., Workman, C. T., Jensen, Lars Juhl & Gorodkin, Jan, 2017, In: Database: The Journal of Biological Databases and Curation. 2017, 9 p., baw167.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Pharos 2023: an integrated resource for the understudied human proteome

      Kelleher, K. J., Sheils, T. K., Mathias, S. L., Yang, J. J., Metzger, V. T., Siramshetty, V. B., Nguyen, D., Jensen, Lars Juhl, Vidovic, D., Schurer, S. C., Holmes, J., Sharma, K. R., Pillai, A., Bologa, C. G., Edwards, J. S., Mathe, E. A. & Oprea, T., 2023, In: Nucleic Acids Research. 51, D1, p. D1405-D1416 12 p., gkac1033.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models

      Kirik, U., Refsgaard, J. C. & Jensen, Lars Juhl, 2019, In: Journal of Proteome Research. 18, 6, p. 2385-2396

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Linking glycemic dysregulation in diabetes to symptoms, comorbidities, and genetics through EHR data mining

      Kirk, I. K., Simon, C., Banasik, K., Holm, P. C., Haue, A. D., Jensen, P. B., Jensen, L. J., Rodriguez, C. L., Pedersen, M. K., Eriksson, R., Andersen, H. U., Almdal, T., Bork-Jensen, J., Grarup, N., Borch-Johnsen, K., Pedersen, O., Pociot, F., Hansen, T., Bergholdt, R., Rossing, P. & 1 others, Brunak, Søren, 2019, In: eLife. 8, 19 p., e44941.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Differential Expression of the β3 Subunit of Voltage-Gated Ca2+ Channel in Mesial Temporal Lobe Epilepsy

      Kjær, C., Palasca, Oana, Barzaghi, G., Bak, Lasse Kristoffer, Durhuus, R. K. J., Jakobsen, Emil, Pedersen, Louise, Bartels, Emil Daniel, Woldbye, David Paul Drucker, Pinborg, Lars Hageman & Jensen, Lars Juhl, 2023, In: Molecular Neurobiology. 60, p. 5755–5769

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Transcriptome analysis in patients with temporal lobe epilepsy

      Kjær, C., Barzaghi, G., Bak, Lasse Kristoffer, Goetze, Jens P. , Yde, C. W., Woldbye, David Paul Drucker, Pinborg, Lars Hageman & Jensen, Lars Juhl, 2019, In: Brain. 142, 10, p. 49-64 16 p., e55.

      Research output: Contribution to journal › Letter › Research › peer-review

    10. Published

      Arena3Dweb: interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration

      Kokoli, M., Karatzas, E., Baltoumas, F. A., Schneider, R., Pafilis, E., Paragkamian, S., Doncheva, Nadezhda Tsankova, Jensen, Lars Juhl & Pavlopoulos, G. A., 2023, In: NAR Genomics and Bioinformatics. 5, 2, 8 p., lqad053.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Systematic association of genes to phenotypes by genome and literature mining

      Korbel, J. O., Doerks, T., Jensen, Lars Juhl, Perez-Iratxeta, C., Kaczanowski, S., Hooper, S. D., Andrade, M. A. & Bork, P., 2005, In: P L o S Biology (Online). 3, 5, p. e134

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs

      Korbel, J. O., Jensen, Lars Juhl, von Mering, C. & Bork, P., 2004, In: Nature Biotechnology. 22, 7, p. 911-7 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      U-CIE [/juː ‘siː/]: Color encoding of high-dimensional data

      Koutrouli, Mikaela, Morris, J. H. & Jensen, Lars Juhl, 2022, In: Protein Science. 31, 9, 8 p., e4388.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data

      Koutrouli, Mikaela, Nastou, Katerina, Piera Líndez, Pau, Bouwmeester, R., Rasmussen, Simon, Martens, L. & Jensen, Lars Juhl, 2024, In: Bioinformatics. 40, 2, 11 p., btae010.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      miRNAs in Human Subcutaneous Adipose Tissue: Effects of Weight Loss Induced by Hypocaloric Diet and Exercise

      Kristensen, M. M., Davidsen, P. K., Vigelso, A., Hansen, C. N., Jensen, Lars Juhl, Jessen, N., Bruun, J. M., Dela, Flemming & Helge, Jørn Wulff, Mar 2017, In: Obesity. 25, 3, p. 572-580 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Large-scale prediction of drug-target relationships

      Kuhn, M., Campillos, M., González, P., Jensen, Lars Juhl & Bork, P., 2008, In: F E B S Letters. 582, 8, p. 1283-90 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      STITCH 2: an interaction network database for small molecules and proteins

      Kuhn, M., Szklarczyk, D., Franceschini, A., Campillos, M., von Mering, C., Jensen, Lars Juhl, Beyer, A. & Bork, P., 2010, In: Nucleic Acids Research. 38, Database issue, p. D552-6

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      A side effect resource to capture phenotypic effects of drugs

      Kuhn, M., Campillos, M., Letunic, I., Jensen, Lars Juhl & Bork, P., 1 Jan 2010, In: Molecular Systems Biology. 6, p. 343

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      STITCH 4: integration of protein-chemical interactions with user data

      Kuhn, M., Szklarczyk, D. M., Pletscher-Frankild, S., Blicher, T. H., von Mering, C., Jensen, Lars Juhl & Bork, P., 28 Nov 2013, In: Nucleic Acids Research. 42, D1, p. D401-D407 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Systematic identification of proteins that elicit drug side effects

      Kuhn, M., Al Banchaabouchi, M., Campillos, M., Jensen, Lars Juhl, Gross, C., Gavin, A. & Bork, P., 30 Apr 2013, In: Molecular Systems Biology. 9, p. 663 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. STITCH: interaction networks of chemicals and proteins

      Kuhn, M., von Mering, C., Campillos, M., Jensen, Lars Juhl & Bork, P., 2008, In: Nucleic Acids Research. 36, Database issue, p. D684-8

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      The SIDER database of drugs and side effects

      Kuhn, M., Letunic, I., Jensen, Lars Juhl & Bork, P., 4 Jan 2016, In: Nucleic Acids Research. 44, p. D1075-9

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      STITCH 3: zooming in on protein-chemical interactions

      Kuhn, M., Szklarczyk, D., Franceschini, A., von Mering, C., Jensen, Lars Juhl & Bork, P., 2012, In: Nucleic Acids Research. 40, Database issue, p. D876-80

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Suppression of water as a nucleophile in Candida antarctica lipase B catalysis

      Larsen, M. W., Zielinska, D. F., Martinelle, M., Hidalgo, A., Jensen, Lars Juhl, Bornscheuer, U. T. & Hult, K., 12 Apr 2010, In: ChemBioChem. 11, 6, p. 796-801 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells

      Buch-Larsen, Sara Charlotte, Sylvestersen, K. B., Mund, Andreas, Lyon, D., Mullari, M., Madsen, M. V., Daniel, J. A., Jensen, Lars Juhl & Nielsen, Michael Lund, 30 Aug 2016, In: Science Signaling. 9, 443, 14 p., rs9.

      Research output: Contribution to journal › Journal article › Research › peer-review

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