Jakob Hull Havgaard

Jakob Hull Havgaard

Associate Professor

ORCID: 0000-0002-4816-814X

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  1. Published

    CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters

    Alkan, F., Wenzel, Anne, Anthon, Christian, Havgaard, Jakob Hull & Gorodkin, Jan, 2018, In: Genome Biology. 19, 13 p., 177.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Semiautomated improvement of RNA alignments

    Andersen, E. S., Lind-Thomsen, A., Knudsen, B., Kristensen, S. E., Havgaard, Jakob Hull, Torarinsson, E., Larsen, N., Zwieb, C., Sestoft, P., Kjems, J. & Gorodkin, Jan, 2007, In: RNA: A publication of the RNA Society. 13, 11, p. 1850-1859 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Structured RNAs and synteny regions in the pig genome

    Anthon, Christian, Tafer, H., Havgaard, Jakob Hull, Thomsen, B., Hedegaard, J., Seemann, Ernst Stefan, Pundhir, Sachin, Kehr, S., Bartschat, S., Nielsen, M., Nielsen, R. O., Fredholm, Merete, Stadler, P. F. & Gorodkin, Jan, 2014, In: BMC Genomics. 15, 27 p., 459.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    The Bacillaceae-1 RNA motif comprises two distinct classes

    González-Tortuero, E., Anthon, Christian, Havgaard, Jakob Hull, Geissler, Adrian Sven, Breüner, A., Hjort, C., Gorodkin, Jan & Seemann, Ernst Stefan, 2022, In: Gene. 841, 146756.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

    Gorodkin, J., Cirera, S., Hedegaard, J., Gilchrist, M. J., Panitz, F., Jørgensen, C., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T., Nielsen, B., Havgaard, J. H., Rosenkilde, C., Wang, J., Li, H., Li, R., Liu, B., Hu, S., Dong, W. & 16 others, Li, W., Yu, J., Wang, J., Staefeldt, H., Wernersson, R., Madsen, L. B., Thomsen, B. S., Hornshøj, H., Bujie, Z., Wang, X., Wang, X., Bolund, L., Brunak, Søren, Yang, H., Bendixen, C. & Fredholm, Merete, 2007, In: Genome Biology. 8, R45, p. R45 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    De novo prediction of structured RNAs from genomic sequences

    Gorodkin, Jan, Hofacker, I. L., Þórarinsson, E., Yao, Z., Havgaard, Jakob Hull & Ruzzo, W. L., 2010, In: Trends in Biotechnology. 28, 1, p. 9-19 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    MicroRNA sequence motifs reveal asymmetry between the stem arms

    Gorodkin, Jan, Havgaard, Jakob Hull, Ensterö, M., Sawera, M., Jensen, P., Öhman, M. & Fredholm, Merete, 2006, In: Computational Biology and Chemistry. 30, 4, p. 249-254 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix

    Havgaard, Jakob Hull, Torarinsson, E. & Gorodkin, Jan, 2007, In: PLoS Computational Biology. 3, 10, p. 1896-1908 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search

    Havgaard, Jakob Hull, Lyngsø, R. B. & Gorodkin, Jan, 2005, In: Nucleic Acids Research. 33, p. W650-W653 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Structural alignment of RNA with FOLDALIGN

    Havgaard, Jakob Hull, 2007, Frederiksberg: Center for Skov, Landskab og Planlægning/Københavns Universitet. 128 p.

    Research output: Book/Report › Ph.D. thesis › Research

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