thw266 KU
Professor, Affiliate Professor
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31º South: The physiology of adaptation to arid conditions in a passerine bird
Ribeiro, Â. M., Puetz, Lara Christine, Pattinson, N. B., Dalén, L., Deng, Y., KU, thw266, Rodrigues da Fonseca, Rute Andreia, Smit, B. & Gilbert, M Thomas P, 2019, In: Molecular Ecology. 28, 16, p. 3709-3721 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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863 genomes reveal the origin and domestication of chicken
Wang, M. S., Thakur, M., Peng, M-S., Jiang, Y., Frantz, L. A. F., Li, M., Zhang, J-J., Wang, S., Peters, J., Otecko, N. O., Suwannapoom, C., Guo, X., Zheng, Z-Q., Esmailizadeh, A., Hirimuthugoda, N. Y., Ashari, H., Suladari, S., Zein, M. S. A., Kusza, S., Sohrabi, S. & 37 others, , 2020, In: Cell Research. 30, 8, p. 693-701 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Callithrix jacchus (the common marmoset)
Yang, Chentao & KU, thw266, 2021, In: Trends in Genetics. 37, 10, p. 948-949 2 p.Research output: Contribution to journal › Letter › Research › peer-review
A Young Drosophila Duplicate Gene Plays Essential Roles in Spermatogenesis by Regulating Several Y-Linked Male Fertility Genes
Ding, Y., Zhao, L., Yang, S., Jiang, Y., Chen, Y., Zhao, R., Zhang, Y., KU, thw266, Dong, Y., Yu, H., Zhou, Q. & Wang, W., 2010, In: PLOS Genetics. 6, 12, 12 p., e1001255.Research output: Contribution to journal › Journal article › Research › peer-review
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A complete, telomere-to-telomere human genome sequence presents new opportunities for evolutionary genomics
Mao, Y. & KU, thw266, 2022, In: Nature Methods. 19, 6, p. 635-638 4 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
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A draft genome assembly of spotted hyena, Crocuta crocuta
Yang, C., Li, F., Xiong, Z., Koepfli, K., Ryder, O., Perelman, P., Li, Q. & KU, thw266, 2020, In: Scientific Data. 7, 10 p., 126.Research output: Contribution to journal › Journal article › Research › peer-review
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A draft genome sequence of the elusive giant squid, Architeuthis dux
da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, , 2020, In: GigaScience. 9, 1, 12 p., giz152.Research output: Contribution to journal › Journal article › Research › peer-review
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A flock of Genomes
KU, thw266, Jarvis, E. D. & Gilbert, M Thomas P, 2014, In: Science. 346, 6215, p. 1308-1309 2 p.Research output: Contribution to journal › Editorial › Research › peer-review
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A genomic comparison of two termites with different social complexity
Korb, J., Poulsen, Michael, Hu, H., Li, C., Boomsma, Jacobus J., KU, thw266 & Liebig, J., 2015, In: Frontiers in Genetics. 6, 12 p., 9.Research output: Contribution to journal › Journal article › Research › peer-review
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A global catalog of whole-genome diversity from 233 primate species
Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S. & 55 others, , 2023, In: Science (New York, N.Y.). 380, 6648, p. 906-913 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes
Toh, H., Yang, C., Formenti, G., Raja, K., Yan, L., Tracey, A., Chow, W., Howe, K., Bergeron, L. A., Zhang, G., Haase, B., Mountcastle, J., Fedrigo, O., Fogg, J., Kirilenko, B., Munegowda, C., Hiller, M., Jain, A., Kihara, D., Rhie, A. & 9 others, , 2022, In: BMC Biology. 20, 21 p., 245.Research output: Contribution to journal › Journal article › Research › peer-review
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A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari Desert
Farré, M., Li, Q., Zhou, Y., Damas, J., Chemnick, L. G., Kim, J., Ryder, O. A., Ma, J., KU, thw266, Larkin, D. M. & Lewin, H. A., 2019, In: GigaScience. 8, 2, p. 1-8 giy162.Research output: Contribution to journal › Journal article › Research › peer-review
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A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals
Li, J., Zhang, J., Liu, J., Zhou, Y., Cai, C., Xu, L., Dai, X., Feng, S., Guo, C., Rao, J., Wei, K., Jarvis, E. D., Jiang, Y., Zhou, Z., KU, thw266 & Zhou, Q., 2021, In: GigaScience. 10, 1, 15 p., giaa142.Research output: Contribution to journal › Journal article › Research › peer-review
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A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes
Liu, J., Wang, Z., Li, J., Xu, L., Liu, J., Feng, S., Guo, C., Chen, S., Ren, Z., Rao, J., Wei, K., Chen, Y., Jarvis, E. D., KU, thw266 & Zhou, Q., 2021, In: Genome Research. 31, 3, p. 497-511 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A novel method for using RNA-seq data to identify imprinted genes in social Hymenoptera with multiply mated queens
Howe, Jack, Schiøtt, M., Li, Q., Wang, Z., KU, thw266 & Boomsma, Jacobus J., 2020, In: Journal of Evolutionary Biology. 33, 12, p. 1770-1782 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A region of suppressed recombination misleads neoavian phylogenomics
Mirarab, S., Rivas-González, I., Feng, S., Stiller, Josefin, Fang, Q., Mai, U., Hickey, G., Chen, G., Brajuka, N., Fedrigo, O., Formenti, G., Wolf, J. B. W., Howe, K., Antunes, A., Schierup, M. H., Paten, B., Jarvis, E. D., KU, thw266 & Braun, E. L., 1 Apr 2024, In: Proceedings of the National Academy of Sciences. 121, 15, 10 p., e2319506121.Research output: Contribution to journal › Journal article › Research › peer-review
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A single-cell transcriptomic atlas tracking the neural basis of division of labour in an ant superorganism
Li, Q., Wang, M., Zhang, P., Liu, Y., Guo, Q., Zhu, Y., Wen, T., Dai, X., Zhang, X., Nagel, M., Dethlefsen, B. H., Xie, N., Zhao, J., Jiang, W., Han, L., Wu, L., Zhong, W., Wang, Z., Wei, X., Dai, W. & 9 others, , 2022, In: Nature Ecology & Evolution. 6, 8, p. 1191-1204Research output: Contribution to journal › Journal article › Research › peer-review
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A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee
Avalos, A., Pan, H., Li, C., Acevedo-Gonzalez, J. P., Rendon, G., Fields, C. J., Brown, P. J., Giray, T., Robinson, G. E., Hudson, M. E. & KU, thw266, 16 Nov 2017, In: Nature Communications. 8, 9 p., 1550.Research output: Contribution to journal › Journal article › Research › peer-review
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Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors
Fiddaman, S. R., Vinkler, M., Spiro, S. G., Levy, H., Emerling, C. A., Boyd, A. C., Dimopoulos, E. A., Vianna, J. A., Cole, T. L., Pan, H., Fang, M., KU, thw266, Hart, T., Frantz, L. A. F. & Smith, A. L., 2022, In: Molecular Biology and Evolution. 39, 1, 17 p., msab354.Research output: Contribution to journal › Journal article › Research › peer-review
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Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes
Fang, X., Seim, I., Huang, Z., Gerashchenko, M. V., Xiong, Z., Turanov, A. A., Zhu, Y., Lobanov, A. V., Fan, D., Yim, S. H., Yao, X., Ma, S., Yang, L., Lee, S-G., Kim, E. B., Bronson, R. T., Sumbera, R., Buffenstein, R., Zhou, X., Krogh, A. & 4 others, , 2014, In: Cell Reports. 8, 5, p. 1354-1364 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Adaptive diversity of innate immune receptor family short pentraxins in Murinae
Li, Y., Robins, J. H., Ye, J., Huang, Z., Wen, Q. & KU, thw266, 2012, In: F E B S Letters. 586, 6, p. 798-803 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Advances in genome editing technology and its promising application in evolutionary and ecological studies
Chen, L., Tang, L., Xiang, H., Jin, L., Li, Q., Dong, Y., Wang, W. & KU, thw266, 2014, In: GigaScience. 3, 24, 10 p.Research output: Contribution to journal › Review › Research › peer-review
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African lungfish genome sheds light on the vertebrate water-to-land transition
Wang, K., Wang, J., Zhu, C., Yang, L., Ren, Y., Ruan, J., Fan, G., Hu, J., Xu, W., Bi, X., Zhu, Y., Song, Y., Chen, H., Ma, T., Zhao, R., Jiang, H., Zhang, B., Feng, C., Yuan, Y., Gan, X. & 16 others, , 2021, In: Cell. 184, 5, p. 1362-1376.e18 33 p.Research output: Contribution to journal › Journal article › Research › peer-review
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An Indo-Pacific Humpback Dolphin Genome Reveals Insights into Chromosome Evolution and the Demography of a Vulnerable Species
Zhang, P., Zhao, Y., Li, C., Lin, M., Dong, L., Zhang, R., Liu, M., Li, K., Zhang, H., Liu, X., Zhang, Y., Yuan, Y., Liu, H., Seim, I., Sun, S., Du, X., Chang, Y., Li, F., Liu, S., Lee, S. M. Y. & 13 others, , 2020, In: iScience. 23, 10, 52 p., 101640.Research output: Contribution to journal › Journal article › Research › peer-review
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Ancestral developmental potentials in early bony fish contributed to vertebrate water-to-land transition
Bi, X. & KU, thw266, 2021, In: Zoological research. 42, 2, p. 135-137 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient and Modern Genomes Reveal Microsatellites Maintain a Dynamic Equilibrium Through Deep Time
McComish, B. J., Charleston, M. A., Parks, M., Baroni, C., Salvatore, M. C., Li, R., KU, thw266, Millar, C. D., Holland, B. R. & Lambert, D. M., 2024, In: Genome Biology and Evolution. 16, 3, 11 p., evae017.Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient and modern genomes unravel the evolutionary history of the rhinoceros family
Liu, S., Westbury, M. V., Dussex, N., Mitchell, K. J., Sinding, M. H. S., Heintzman, P. D., Duchêne, D. A., Kapp, J. D., von Seth, J., Heiniger, H., Sánchez-Barreiro, F., Margaryan, A., André-Olsen, R., De Cahsan, B., Meng, G., Yang, C., Chen, L., van der Valk, T., Moodley, Y., Rookmaaker, K. & 19 others, , 2021, In: Cell. 184, 19, p. 4874-4885.e16Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient population genomics and the study of evolution
Parks, M., Subramanian, S., Baroni, C., Salvatore, M. C., KU, thw266, Millar, C. D. & Lambert, D. M., 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient proteins resolve controversy over the identity of Genyornis eggshell
Demarchi, B., Stiller, Josefin, Grealy, A., Mackie, Meaghan, Deng, Y., Gilbert, M Thomas P, Clarke, J., Legendre, L. J., Boano, R., Sicheritz-Pontén, Thomas, Magee, J., KU, thw266, Bunce, M., Collins, Matthew James & Miller, G., 2022, In: PNAS. 119, 43, 9 p., e2109326119.Research output: Contribution to journal › Journal article › Research › peer-review
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Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype
Borges, R., Fonseca, J., Gomes, C., Johnson, W. E., O'Brien, S. J., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D. & Antunes, A., 2019, In: Genome Biology and Evolution. 11, 8, p. 2244-2255Research output: Contribution to journal › Journal article › Research › peer-review
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Avianbase: a community resource for bird genomics
Eöry, L., Gilbert, M Thomas P, Li, C., Li, B., Archibald, A., Aken, B. L., KU, thw266, Jarvis, E., Flicek, P. & Burt, D. W., 2015, In: Genome Biology (Online Edition). 16, 4 p., 21.Research output: Contribution to journal › Letter › Research › peer-review
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Bird sequencing project takes off
KU, thw266, Rahbek, Carsten, Graves, G. R., Jarvis, E. D. & Gilbert, M Thomas P, 2015, In: Nature. 522, 7554, p. 34 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
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Bone-associated gene evolution and the origin of flight in birds
Machado, J. P., Johnson, W. E., Gilbert, M Thomas P, KU, thw266, Jarvis, E. D., O'Brien, S. J. & Antunes, A., 2016, In: BMC Genomics. 17, 15 p., 371.Research output: Contribution to journal › Journal article › Research › peer-review
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Canalized gene expression during development mediates caste differentiation in ants
Qiu, Bitao, Dai, X., Li, P., Larsen, Rasmus Stenbak, Li, Ruyan, Price, A. L., Ding, G., Texada, Michael James, Zhang, X., Zuo, D., Gao, Q., Jiang, W., Wen, T., Pontieri, L., Guo, C., Rewitz, Kim, Li, Q., Liu, W., Boomsma, Jacobus J. & KU, thw266, 2022, In: Nature Ecology and Evolution. 6, 11, p. 1753-1765Research output: Contribution to journal › Journal article › Research › peer-review
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Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior
Li, Q., Wang, Z., Lian, J., Schiøtt, M., Jin, L., Zhang, P., Zhang, Y., Nygaard, S., Peng, Z., Zhou, Y., Deng, Y., Zhang, W., Boomsma, Jacobus J. & KU, thw266, 2014, In: Nature Communications. 5, 11 p., 4943.Research output: Contribution to journal › Journal article › Research › peer-review
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Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain
Wang, M., Liu, Y., Wen, T., Liu, W., Gao, Q., Zhao, J., Xiong, Z., Wang, Z., Jiang, W., Yu, Y., Wu, L., Yuan, Y., Wei, X., Xu, J., Cheng, M., Zhang, P., Li, P., Hou, Y., Yang, H., Zhang, G. & 3 others, , 2020, In: Scientific Data. 7, 10 p., 217.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity
Zhang, G., Cowled, C., Shi, Z., Huang, Z., Bishop-Lilly, K. A., Fang, X., Wynne, J. W., Xiong, Z., Baker, M. L., Zhao, W., Tachedjian, M., Zhu, Y., Zhou, P., Jiang, X., Ng, J., Yang, L., Wu, L., Xiao, J., Feng, Y., Chen, Y. & 8 others, , 2013, In: Science (New York, N.Y.). 339, 6118Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative Phylogenomics, a Stepping Stone for Bird Biodiversity Studies
Stiller, Josefin & KU, thw266, 2019, In: Diversity. 11, 7, 19 p., 115.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative genomic data of the Avian Phylogenomics Project
KU, thw266, Li, B., Li, C., Gilbert, M Thomas P, Jarvis, E. D., Wang, J. & Avian Genome Consortium, A. G. C., 2014, In: GigaScience. 3, 8 p., 26.Research output: Contribution to journal › Journal article › Research › peer-review
Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation
Pan, G., Xu, J., Li, T., Xia, Q., Liu, S-L., Zhang, G., Li, S., Li, C., Liu, H., Yang, L., Liu, T., Zhang, X., Wu, Z., Fan, W., Dang, X., Xiang, H., Tao, M., Li, Y., Hu, J., Li, Z. & 13 others, , 2013, In: BMC Genomics. 14, 14 p., 186.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative genomics reveals insights into avian genome evolution and adaptation
Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W. & 85 others, , 2014, In: Science. 346, 6215, p. 1311-1320 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative genomics reveals the hybrid origin of a macaque group
Zhang, B. L., Chen, W., Wang, Z., Pang, W., Luo, M. T., Wang, S., Shao, Y., He, W. Q., Deng, Y., Zhou, L., Chen, J., Yang, M. M., Wu, Y., Wang, L., Fernández-Bellon, H., Molloy, S., Meunier, H., Wanert, F., Kuderna, L., Marques-Bonet, T. & 10 others, , 2023, In: Science Advances. 9, 22, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication
Xiang, H., Li, X., Dai, F., Xu, X., Tan, A., Chen, L., KU, thw266, Ding, Y., Li, Q., Lian, J., Willden, A., Guo, Q., Xia, Q., Wang, J. & Wang, W., 2013, In: BMC Genomics. 14, 11 p., 646.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, C., Geng, C., Liu, Shanlin, Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Zhang, W., Fu, S., Vieira, Filipe Garrett, Germonpré, M., Bocherens, H., Fedorov, S., Petersen, Bent, Sicheritz-Pontén, T., Marques-Bonet, T., KU, thw266, Jiang, H. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative phylogeography study reveals introgression and incomplete lineage sorting during rapid diversification of Rhodiola
You, J., Lougheed, S. C., Zhao, Y., KU, thw266, Liu, W., Lu, F., Wang, Y., Zhang, W., Yang, J., Qiong, L. & Song, Z., 2022, In: Annals of Botany. 129, 2, p. 185-200 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative study on pattern recognition receptors in non-teleost ray-finned fishes and their evolutionary significance in primitive vertebrates
He, Y., Pan, H., KU, thw266 & He, S., 2019, In: Science China Life Sciences. 62, 4, p. 566-578Research output: Contribution to journal › Journal article › Research › peer-review
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Complementary symbiont contributions to plant decomposition in a fungus-farming termite
Thomas-Poulsen, M., Hu, H., Li, C., Chen, Z., Xu, L., Otani, S., Nygaard, S., Nobre, T., Klaubauf, S., Schindler, P. M., Hauser, F., Pan, H., Yang, Z., Sonnenberg, A. S. M., de Beer, Z. W., Zhang, Y., Wingfield, M. J., Grimmelikhuijzen, C., de Vries, R. P., Korb, J. & 4 others, , 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 40, 6 p., 14500-14505.Research output: Contribution to journal › Journal article › Research › peer-review
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Complex evolutionary trajectories of sex chromosomes across bird taxa
Zhou, Q., Zhang, J., Bachtrog, D., An, N., Huang, Q., Jarvis, E. D., Gilbert, M Thomas P & KU, thw266, 2014, In: Science. 346, 6215, 8 p., 1246338.Research output: Contribution to journal › Journal article › Research › peer-review
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Complexity of avian evolution revealed by family-level genomes
Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, , 1 Apr 2024, In: Nature.Research output: Contribution to journal › Journal article › Research › peer-review
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Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird
Cavill, Emily Louisa, Gopalakrishnan, Shyam, Puetz, Lara Christine, Ribeiro, Â. M., Mak, Sarah Siu Tze, Rodrigues da Fonseca, Rute Andreia, Antunes Pacheco, George, Dunlop, B., Accouche, W., Shah, N., Zora, A., Calabrese, L., Genner, M., Jones, G., Guo, C., KU, thw266 & Gilbert, M Thomas P, 2022, In: Ibis. 164, 2, p. 396-410 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 40294134
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Molecular traces of alternative social organization in a termite genome
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Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior
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Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment
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