Bent Petersen
Senior Researcher
Section for Hologenomics
Øster Farimagsgade 5
1353 København K
- 2018
- Published
Improved de novo genomic assembly for the domestic donkey
Renaud, Gabriel, Petersen, Bent, Seguin-orlando, A., Bertelsen, Mads Frost, Waller, A., Newton, R., Paillot, R., Bryant, N., Vaudin, M., Librado, P. & Orlando, L., 2018, In: Science Advances. 4, 4, eaaq0392.Research output: Contribution to journal › Journal article › Research › peer-review
Improved ontology for eukaryotic single-exon coding sequences in biological databases
Jorquera, R., González, C., Clausen, P. T. L. C., Petersen, Bent & Holmes, D. S., 2018, In: Database: The Journal of Biological Databases and Curation. 2018, 6 p., bay089.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific Gene Flow Shaped the Evolution of the Genus Canis
Gopalakrishnan, S., Sinding, M. H. S., Ramos-Madrigal, J., Niemann, J., Samaniego Castruita, J. A., Vieira, F. G., Carøe, C., Montero, M. D. M., Kuderna, L., Serres, A., González-Basallote, V. M., Liu, Y. H., Wang, G. D., Marques-Bonet, T., Mirarab, S., Fernandes, C., Gaubert, P., Koepfli, K. P., Budd, J., Rueness, E. K. & 7 others, , 2018, In: Current Biology. 28, 21, p. 3441-3449Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics of grey wolves and wolf-like canids in North America
Sinding, Mikkel Holger Strander, Gopalakrishan, S., Vieira, Filipe Garrett, Samaniego Castruita, J. A., Raundrup, K., Heide-Jørgensen, M. P., Meldgaard, Morten, Petersen, Bent, Sicheritz-Ponten, T., Mikkelsen, J. B., Marquard-Petersen, U., Dietz, R., Sonne, C., Dalén, L., Bachmann, L., Wiig, Ø., Hansen, Anders Johannes & Gilbert, M Thomas P, 2018, In: PLOS Genetics. 14, 11, 23 p., e1007745.Research output: Contribution to journal › Journal article › Research › peer-review
Genome analyses show strong selection on coloration, morphological and behavioral phenotypes in birds-of-paradise
Prost, S., Armstrong, E. E., Nylander, J., Thomas, G. W. C., Suh, A., Petersen, Bent, Dalen, L., Benz, B. W., Blom, M. P. K., Palkopoulou, E., Ericson, P. G. P. & Irestedt, M., 16 May 2018, (Accepted/In press) In: bioRxiv.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibodies to intercellular adhesion molecule 1-binding Plasmodium falciparum erythrocyte membrane protein 1-DBLβ are biomarkers of protective immunity to malaria in a cohort of young children from Papua New Guinea
Tessema, S. K., Utama, D., Chesnokov, O., Hodder, A. N., Lin, C. S., Harrison, G. L. A., Jespersen, Jakob Schmidt, Petersen, Bent, Tavul, L., Siba, P., Kwiatkowski, D., Lavstsen, Thomas, Hansen, D. S., Oleinikov, A. V., Mueller, I. & Barry, A. E., 1 Aug 2018, In: Infection and Immunity. 86, 8, p. 1-14 14 p., e00485-17.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise
Prost, S., Armstrong, E. E., Nylander, J., Thomas, G. W. C., Suh, A., Petersen, Bent, Dalen, L., Benz, B. W., Blom, M. P. K., Palkopoulou, E., Ericson, P. G. P. & Irestedt, M., 2019, In: GigaScience. 8, 5, 12 p., giz003.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic analyses reveal an absence of contemporary introgressive admixture between fin whales and blue whales, despite known hybrids
Westbury, Michael Vincent, Petersen, Bent & Lorenzen, Eline, 2019, In: PLoS ONE. 14, 9, 13 p., e0222004.Research output: Contribution to journal › Journal article › Research › peer-review
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Hendriksen, R. S., Munk, P., Njage, P., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Pedersen, S. K., Kjeldgaard, J., Kaas, R. S., Clausen, P. T. L. C., Vogt, J. K., Leekitcharoenphon, P., van de Schans, M. G. M., Zuidema, T., de Roda Husman, A. M., Rasmussen, S., Petersen, B., Bego, A. & 108 others, , 2019, In: Nature Communications. 10, 1, 12 p., 1124.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements
Rey de la Iglesia, Alba, Gopalakrishan, S., Carøe, C., Alquezar-Planas, D. E., Nielsen, A. A., Röder, T., Pedersen, Lene Bruhn, Næsborg-Nielsen, C., Sinding, Mikkel Holger Strander, Rath, Martin Fredensborg, Li, Z., Petersen, Bent, Gilbert, M Thomas P, Bunce, M., Mourier, T. & Hansen, Anders Johannes, 2019, In: Molecular Ecology Resources. 19, 2, p. 512-525 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Narwhal Genome Reveals Long-Term Low Genetic Diversity despite Current Large Abundance Size
Westbury, Michael Vincent, Petersen, Bent, Garde, E., Heide-Jørgensen, M. P. & Lorenzen, Eline, 2019, In: iScience. 15, p. 592-599Research output: Contribution to journal › Journal article › Research › peer-review
- Published
NetSurfP-2.0: improved prediction of protein structural features by integrated deep learning
Klausen, M. S., Jespersen, M. C., Nielsen, H., Jensen, K. K., Jurtz, V. I., Sønderby, C. K., Sommer, M. O. A., Winther, Ole, Nielsen, M., Petersen, Bent & Marcatili, P., 2019, In: Proteins: Structure, Function and Bioinformatics. 87, 6, p. 520-527Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Palaeogenomic insights into the origins of French grapevine diversity
Ramos Madrigal, Jazmin, Runge, Anne Kathrine Wiborg, Bouby, L., Lacombe, T., Samaniego Castruita, J. A., Adam-Blondon, A., Figueiral, I., Hallavant, C., Schaal, C., Töpfer, R., Petersen, Bent, Sicheritz-Pontén, T., This, P., Bacilieri, R., Gilbert, M Thomas P & Wales, N., 2019, In: Nature Plants. 5, 6, p. 595-603 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution
Jørgensen, T. S., Petersen, Bent, Petersen, H. C. B., Browne, Patrick Denis, Prost, S., Stillman, J. H., Hansen, Lars Hestbjerg & Hansen, B. W., 2019, In: Genome Biology and Evolution. 11, 5, p. 1440-1450Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Whole Genome Sequence and mRNA Transcriptome of the Tropical Cyclopoid Copepod Apocyclops royi
Jorgensen, T. S., Nielsen, B. L. H., Petersen, Bent, Browne, Patrick Denis, Hansen, B. W. & Hansen, Lars Hestbjerg, 2019, In: G3: Genes, Genomes, Genetics (Bethesda). 9, 5, p. 1295-1302Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
A draft genome sequence of the elusive giant squid, Architeuthis dux
da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, , 2020, In: GigaScience. 9, 1, 12 p., giz152.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Arctic-adapted dogs emerged at the Pleistocene-Holocene transition
Sinding, M. H. S., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Pitulko, V. V., Kuderna, L., Feuerborn, T. R., Frantz, L. A. F., Vieira, F. G., Niemann, J., Samaniego Castruita, J. A., Carøe, C., Andersen-Ranberg, E. U., Jordan, P. D., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Willerslev, E., Skoglund, P. & 15 others, , 2020, In: Science (New York, N.Y.). 368, 6498, p. 1495-1499 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Connecting moss lipid droplets to patchoulol biosynthesis
Peramuna, A., Bae, H., Quiñonero López, C., Fromberg, A., Petersen, Bent & Simonsen, H. T., 2020, In: PLoS ONE. 15, 12, 19 p., e0243620.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dense sampling of bird diversity increases power of comparative genomics
Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Hart Reeve, A., Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, B., Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, A., Howard, J. T., Parent, C., Pacheco, G. & 130 others, , 2020, In: Nature. 587, 7833, p. 252-257Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet
Gelabert, P., Sandoval-Velasco, M., Serres, A., de Manuel, M., Renom, P., Margaryan, A., Stiller, J., de-Dios, T., Fang, Q., Feng, S., Mañosa, S., Pacheco, G., Ferrando-Bernal, M., Shi, G., Hao, F., Chen, X., Petersen, B., Olsen, R-A., Navarro, A., Deng, Y. & 6 others, , 2020, In: Current Biology. 30, 1, p. 108-114, e1-e5Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages
Ramos-Madrigal, J., Sinding, M-H. S., Carøe, C., Mak, S. S. T., Niemann, J., Samaniego Castruita, J. A., Fedorov, S., Kandyba, A., Germonpré, M., Bocherens, H., Feuerborn, T. R., Pitulko, V. V., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Larson, G., Frantz, L. A. F., Willerslev, E., Meldgaard, M. & 7 others, , 2020, In: Current biology : CB. 31, p. 198-206Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The tuatara genome reveals ancient features of amniote evolution
Gemmell, N. J., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J. R., Adelson, D. L., Suh, A., Bertozzi, T., Grau, J. H., Organ, C., Gardner, P. P., Muffato, M., Patricio, M., Billis, K., Martin, F. J., Flicek, P., Petersen, B., Kang, L., Michalak, P. & 31 others, , 2020, In: Nature. 584, p. 403–409, +19 26 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms
Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of Salmonella enterica Bacteriophage PRF-SP1
Mutusamy, P., Jothi, S. J., Lee, S. Y., Petersen, Bent, Sicheritz-Pontén, Thomas, Clokie, M. R. J., Loke, S., Millard, A., Parimannan, Sivachandran & Rajandas, Heera, 2021, In: Microbiology resource announcements. 10, 47, 3 p., e00965-21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
From Trees to Clouds: PhageClouds for Fast Comparison of ∼640,000 Phage Genomic Sequences and Host-Centric Visualization Using Genomic Network Graphs
Rangel Piñeros, Guillermo Andres, Millard, A., Michniewski, S., Scanlan, D., Sirén, K., Reyes, A., Petersen, Bent, Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2021, In: PHAGE: Therapy, Applications, and Research. 2, 4, p. 194-203Research output: Contribution to journal › Journal article › Research › peer-review
ID: 203154234
Most downloads
-
474
downloads
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
394
downloads
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference
Research output: Contribution to journal › Letter › Research › peer-review
Published -
287
downloads
The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
Research output: Contribution to journal › Journal article › Research › peer-review
Published