Jens Petersen
Associate Professor
Image Analysis, Computational Modelling and Geometry
Universitetsparken 1
2100 København Ø
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Visual assessment of early emphysema and interstitial abnormalities on CT is useful in lung cancer risk analysis
Wille, M. M. W., Thomsen, L. H., Petersen, Jens, de Bruijne, Marleen, Dirksen, A., Pedersen, J. H. & Shaker, S. B., 2016, In: European Radiology. 26, 2, p. 487-494 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Tree-space statistics and approximations for large-scale analysis of anatomical trees
Feragen, A., Owen, M., Petersen, Jens, Wille, M. M. W., Thomsen, L. H., Dirksen, A. & de Bruijne, Marleen, 2013, Information Processing in Medical Imaging: 23rd International Conference, IPMI 2013, Asilomar, CA, USA, June 28–July 3, 2013. Proceedings. Gee, J. C., Joshi, S., Pohl, K. M., Wells, W. M. & Zöllei, L. (eds.). Springer, p. 74-85 12 p. (Lecture notes in computer science, Vol. 7917).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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The effect of inspiration on airway dimensions measured in CT images from the Danish Lung Cancer Screening Trial
Petersen, Jens, Wille, M., Thomsen, L., Feragen, A., Dirksen, A. & de Bruijne, Marleen, 2013, In: Insights into Imaging. 4, Supplement 1, p. 183 1 p., B-0163.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
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Structural characterisation of multilayer lipid bilayer by small-angel neutron and X-ray scattering
Ishoy, T., Lemmich, J., Ipsen, J., Honger, T., Petersen, Jens, Kharkar, J., Nylander, T., Mortensen, Kell, Bauer, R. & Mouritsen, Ole G., 1 Jan 2001, In: Biophysical Society. Annual Meeting. Abstracts. 80, 1, p. 522A-522AResearch output: Contribution to journal › Journal article › Research › peer-review
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Semi-automated detection of pulmonary congestion in patients with non-ST acute coronary syndrome by using of quantitative chest cardiac-CT analysis: Analysis of methodological aspects
Fabricius-Bjerre, A. A., Petersen, Jens, Heitmann, Merete, Elming, H., Ashraf, H., Kofoed, Klaus Fuglsang, Kuhl, J. T., Køber, Lars Valeur & Nielsen, Olav Wendelboe, 2018, In: European Journal of Heart Failure. 20, S1, p. 475-476 P1854.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
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Segmenting Two-Dimensional Structures with Strided Tensor Networks
Selvan, Raghav, Dam, Erik Bjørnager & Petersen, Jens, 2021, Information Processing in Medical Imaging - 27th International Conference, IPMI 2021, Proceedings. Feragen, A., Sommer, S., Schnabel, J. & Nielsen, M. (eds.). Springer, p. 401-414 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12729 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Segmentation of roots in soil with U-Net
Smith, Abraham George, Petersen, Jens, Selvan, Raghav & Rasmussen, Camilla Ruø, 2020, In: Plant Methods. 16, p. 1-15 13.Research output: Contribution to journal › Journal article › Research › peer-review
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Scalable kernels for graphs with continuous attributes
Feragen, A., Kasenburg, N., Petersen, Jens, de Bruijne, Marleen & Borgwardt, K., 2013, 27th Annual Conference on Neural Information Processing Systems 2013: NIPS 2013. Burges, C. J. C., Bottou, L., Welling, M., Ghahramani, Z. & Weinberger, K. Q. (eds.). Curran Associates, Inc., p. 216-224 9 p. (Advances in Neural Information Processing Systems, Vol. 26).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy
Smith, Abraham George, Petersen, Jens, Terrones-Campos, C., Berthelsen, A. K., Forbes, N. J., Darkner, Sune, Specht, Lena & Vogelius, I. R., 2022, In: Medical Physics. 49, 1, p. 461-473Research output: Contribution to journal › Journal article › Research › peer-review
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RootPainter: deep learning segmentation of biological images with corrective annotation
Smith, Abraham George, Han, Eusun, Petersen, Jens, Olsen, N. A. F., Giese, C., Athmann, M., Dresbøll, Dorte Bodin & Thorup-Kristensen, Kristian, 2022, In: New Phytologist. 236, p. 774-791 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Reproducibility of a combined artificial intelligence and optimal-surface graph-cut method to automate bronchial parameter extraction
Dudurych, I., Garcia-Uceda, A., Petersen, Jens, Du, Y., Vliegenthart, R. & de Bruijne, Marleen, 2023, In: European Radiology. 33, p. 6718–6725Research output: Contribution to journal › Journal article › Research › peer-review
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Quantitative analysis of airway abnormalities in CT
Petersen, Jens, Lo, P. C. P., Nielsen, Mads, Edula, G., Ashraf, H., Dirksen, A. & de Bruijne, Marleen, 2010, Medical Imaging 2010: computer-aided Diagnosis. Karssemeijer, N. & Summers, R. M. (eds.). SPIE - International Society for Optical Engineering, 12 p. 76241S. (Progress in Biomedical Optics and Imaging; No. 34, Vol. 11).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Quantitative airway analysis in longitudinal studies using groupwise registration and 4D optimal surfaces
Petersen, Jens, Modat, M., Cardoso, M. J., Dirksen, A., Ourselin, S. & de Bruijne, Marleen, 2013, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer, Vol. 2. p. 287-294 8 p. (Lecture notes in computer science, Vol. 8150).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Quantifying emphysema extent from weakly labeled CT scans of the lungs using label proportions learning
Ørting, S. N., Petersen, Jens, Wille, M., Thomsen, L. & de Bruijne, Marleen, 2016, The Sixth International Workshop on Pulmonary Image Analysis. Beichel, R. R., Farahani, K., Jacobs, C., Kabus, S., Kiraly, A. P., Kuhnigk, J-M., McClelland, J. R., Mori, K., Petersen, J. & S. R. (eds.). CreateSpace Independent Publishing Platform , p. 31-42 11 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Quantification and visualization of variation in anatomical trees
Amenta, N., Datar, M., Dirksen, A., de Bruijne, Marleen, Feragen, A., Ge, X., Pedersen, J., Howard, M., Owen, M., Petersen, Jens, Shi, J. & Xu, Q., 2015, Research in shape modeling. Leonard, K. & Tari, S. (eds.). Springer, p. 57-79 23 p. (Association for Women in Mathematics Series, Vol. 1).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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Prediction of Radiation-induced Lymphopenia following Exposure of the Thoracic Region and Associated Risk of Infections and Mortality
Terrones-Campos, C., Ledergerber, B., Forbes, N., Smith, Abraham George, Petersen, Jens, Helleberg, Marie, Lundgren, Jens, Specht, Lena & Vogelius, Ivan R. , 2023, In: Clinical Oncology. 35, 7, p. e434-e444 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Population-based Incidence of Myopericarditis After COVID-19 Vaccination in Danish Adolescents
Nygaard, Ulrikka, Holm, M., Bohnstedt, Cathrine, Chai, Q., Schmidt, Lisbeth Samsø, Hartling, U. B., Petersen, Jens, Thaarup, J., Bjerre, J., Vejlstrup, N. G., Juul, K. & Stensballe, Lone Graff, Jan 2022, In: Pediatric Infectious Disease Journal. 41, 1, p. E25-E28 4 p.Research output: Contribution to journal › Letter › Research › peer-review
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Patch-based Medical Image Segmentation using Matrix Product State Tensor Networks
Selvan, Raghav, Dam, Erik Bjørnager, Flensborg, S. A. & Petersen, Jens, 2022, In: The Journal of Machine Learning for Biomedical Imaging. 2022, p. 1-24 005.Research output: Contribution to journal › Journal article › Research › peer-review
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Optimal surface segmentation using flow lines to quantify airway abnormalities in chronic obstructive pulmonary disease
Petersen, Jens, Nielsen, Mads, Lo, P. C. P., Nordenmark, L. H., Pedersen, J. J. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2014, In: Medical Image Analysis. 18, 3, p. 531-541 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Optimal graph based segmentation using flow lines with application to airway wall segmentation
Petersen, Jens, Nielsen, Mads, Lo, P. C. P., Saghir, Z., Dirksen, A. & de Bruijne, Marleen, 2011, Information Processing in Medical Imaging: 22nd International Conference, IPMI 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings. Székely, G. & Hahn, H. K. (eds.). Springer, p. 49-60 12 p. (Lecture notes in computer science, Vol. 6801).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Opfront: mesh
Petersen, Jens, 16 Aug 2015Research output: Non-textual form › Computer programme › Research
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Opfront: optimal front segmentation of images
Petersen, Jens, 2014Research output: Non-textual form › Computer programme › Research
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Multisystem inflammatory syndrome in children occurred in one of four thousand children with severe acute respiratory syndrome coronavirus 2
Holm, M., Hartling, U. B., Schmidt, Lisbeth Samsø, Glenthøj, J. P., Kruse, A., Rytter, Maren Johanne Heilskov, Lindhard, M. S., Lawaetz, M. C., Zaharov, T., Petersen, Jens, Andersen, R. M., Lemvik, G., Marcinski, P., Thaarup, J., Jensen, Lise Heilmann, Borch, L., Nielsen, A. B., Vissing, N. H., Schmiegelow, Kjeld & Nygaard, Ulrikka, Sep 2021, In: Acta Paediatrica, International Journal of Paediatrics. 110, 9, p. 2581-2583 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Mean Field Network Based Graph Refinement with Application to Airway Tree Extraction
Selvan, Raghav, Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018, Medical Image Computingand Computer AssistedIntervention – MICCAI 2018: 21st International Conference, Granada, Spain, September 16–20, 2018, Proceedings, Part II. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (eds.). Springer, p. 750-758 (Lecture notes in computer science, Vol. 11071).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Maximization of regional probabilities using Optimal Surface Graphs: application to carotid artery segmentation in MRI
Arias Lorza, A. M., Van Engelen, A., Petersen, Jens, Van Der Lugt, A. & de Bruijne, Marleen, 1 Mar 2018, In: Medical Physics. 45, 3, p. 1159-1169Research output: Contribution to journal › Journal article › Research › peer-review
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Manual airway labeling has limited reproducibility
Petersen, Jens, Feragen, A., Thomsen, L. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2013. 10 p.Research output: Contribution to conference › Poster › Research › peer-review
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Longitudinal analysis of airways using registration
Petersen, Jens, Gorbunova, V., Nielsen, Mads, Dirksen, A., Lo, P. C. P. & de Bruijne, Marleen, 2011, The Fourth International Workshop on Pulmonary Image Analysis. Beichel, R., de Bruijne, M., van Ginneken, B., Kabus, S., Kiraly, A., Kuhnigk, J-M., McClelland, J., Mori, K., van Rikxoort, E. & Rit, S. (eds.). CreateSpace Independent Publishing Platform , p. 11-22 12 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Learning to quantify emphysema extent: What labels do we need?
Orting, S. N., Petersen, Jens, Thomsen, L. H., Winkler Wille, M. M. & de Bruijne, Marleen, 2020, In: IEEE Journal of Biomedical and Health Informatics. 24, 4, p. 1149 -1159Research output: Contribution to journal › Journal article › Research › peer-review
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Interpreting Latent Spaces of Generative Models for Medical Images using Unsupervised Methods
Schön, Julian Elisha, Selvan, Raghav & Petersen, Jens, 2022, Deep Generative Models: Second MICCAI Workshop, DGM4MICCAI 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings. Springer, p. 24-33 (Lecture Notes in Computer Science, Vol. 13609).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Interobserver variability in visual evaluation of thoracic CT scans and comparison with automatic computer measurements of CT lung density
Wille, M. M. W., Thomsen, L. H., Petersen, Jens, Shaker, S. B., Dirksen, A. & Pedersen , J. H., 2012, In: European Respiratory Journal. 40, Supplement 56, p. 25s 1 p., P270.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
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Interfractional dose accumulation for MR-guided liver SBRT: Variation among algorithms is highly patient- and fraction-dependent
Wahlstedt, I., Smith, Abraham George, Andersen, C. E., Behrens, C. P., Nørring Bekke, S., Boye, K., van Overeem Felter, M., Josipovic, Mirjana, Petersen, Jens, Risumlund, S. L., Tascón-Vidarte, J. D., van Timmeren, J. E. & Vogelius, Ivan R. , 2023, In: Radiotherapy and Oncology. 182, 9 p., 109448.Research output: Contribution to journal › Journal article › Research › peer-review
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Increasing Accuracy of Optimal Surfaces Using Min-marginal Energies
Petersen, Jens, Arias-Lorza, A. M., Selvan, Raghav, Bos, D., van der Lugt, A., Pedersen, J. H., Nielsen, Mads & de Bruijne, Marleen, 1 Jan 2019, In: IEEE Transactions on Medical Imaging. 38, 7, p. 1559-1568 8599009.Research output: Contribution to journal › Journal article › Research › peer-review
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Harnessing data science to advance radiation oncology
Vogelius, Ivan R. , Petersen, Jens & Bentzen, S. M., 2020, In: Molecular Oncology. 14, 7, p. 1514–1528Research output: Contribution to journal › Review › Research › peer-review
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Graph cut-based segmentation
Petersen, Jens, Oguz, I. & de Bruijne, Marleen, 2023, Medical Image Analysis. Academic Press, p. 247-273Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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Graph Refinement based Airway Extraction using Mean-Field Networks and Graph Neural Networks
Selvan, Raghav, Kipf, T., Welling, M., Juarez, A. G., Pedersen, J. H., Petersen, Jens & de Bruijne, Marleen, 2020, In: Medical Image Analysis. 64, 12 p., 101751.Research output: Contribution to journal › Journal article › Research › peer-review
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Geometric tree kernels: classification of COPD from airway tree geometry
Feragen, A., Petersen, Jens, Grimm, D., Dirksen, A., Pedersen, J. J. H., Borgwardt, K. & de Bruijne, Marleen, 2013, Information Processing in Medical Imaging: 23rd International Conference, IPMI 2013, Asilomar, CA, USA, June 28–July 3, 2013. Proceedings. Gee, J. C., Joshi, S., Pohl, K. M., Wells, W. M. & Zöllei, L. (eds.). Springer, p. 171-183 13 p. (Lecture notes in computer science, Vol. 7917).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Geodesic atlas-based labeling of anatomical trees: application and evaluation on airways extracted from CT
Feragen, A., Petersen, Jens, Owen, M., Lo, P., Thomsen, L. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2015, In: IEEE Transactions on Medical Imaging. 34, 6, p. 1212-1226 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Feature Learning Based on Visual Similarity Triplets in Medical Image Analysis: A Case Study of Emphysema in Chest CT Scans
Nyboe Ørting, S., Petersen, Jens, Cheplygina, V., Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 2018, Intravascular Imaging and Computer Assisted Stenting and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 7th Joint International Workshop, CVII-STENT 2018 and Third International Workshop, LABELS 2018 Held in Conjunction with MICCAI 2018 Granada, Spain, September 16, 2018 Proceedings. Stoyanov, D., Taylor, Z., Balocco, S. & Sznitman, R. (eds.). Springer, p. 140-149 Chapter 16. (Lecture Notes in Computer Science, Vol. 11043).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Extraction of airway trees using multiple hypothesis tracking and template matching
Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2016, The Sixth International Workshop on Pulmonary Image Analysis: Athens, Greece - October 21, 2016. Beichel, R. R., Farahani, K., Jacobs, C., Kabus, S., Kiraly, A. P., Kuhnigk, J-M., McClelland, J. R., Mori, K., Petersen, J. & Rit, S. (eds.). Create Space Independent Publishing Platform, p. 43-54 12 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Extraction of Airways with Probabilistic State-Space Models and Bayesian Smoothing
Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2017, Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics: First International Workshop, GRAIL 2017, 6th International Workshop, MFCA 2017, and Third International Workshop, MICGen 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Cardoso, M. J., Arbel, T., Ferrante, E., Pennec, X., Dalca, A. V., Parisot, S., Joshi, S., Batmanghelich, N. K., Sotiras, A., Nielsen, M., Sabuncu, M. R., Fletcher, T., Shen, L., Durrleman, S. & Sommer, S. (eds.). Springer, p. 53-63 (Lecture notes in computer science, Vol. 10551).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Extraction of Airways using Graph Neural Networks
Selvan, Raghav, Kipf, T., Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018. 3 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
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Extracting tree structures in CT data by tracking multiple statistically ranked hypotheses
Selvan, Raghav, Petersen, Jens, Pedersen, J. H. & de Bruijne, Marleen, 18 Oct 2019, In: Medical Physics. 46, 10, p. 4431-4440Research output: Contribution to journal › Journal article › Research › peer-review
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Emphysema progression is visually detectable in low-dose CT in continuous but not in former smokers
Wille, M. M. W., Thomsen, L. H., Dirksen, A., Petersen, Jens, Pedersen, J. J. H. & Shaker, S. B., 2014, In: European Radiology. 24, 11, p. 2692-2699 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Effect of inspiration on airway dimensions measured in maximal inspiration CT images of subjects without airflow limitation
Petersen, Jens, Wille, M. M. W., Raket, L. L., Feragen, A., Pedersen, J. H., Nielsen, Mads, Dirksen, A. & de Bruijne, Marleen, 2014, In: European Radiology. 24, 9, p. 2319-2325 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Dissimilarity-based classification of anatomical tree structures
Sørensen, L., Lo, P. C. P., Dirksen, A., Petersen, Jens & de Bruijne, Marleen, 2011, Information Processing in Medical Imaging: 22nd International Conference, IPMI 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings. Székely, G. & Hahn, H. K. (eds.). Springer, p. 475-485 11 p. (Lecture notes in computer science, Vol. 6801).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Diagnosis of bronchiectasis and airway wall thickening in children with cystic fibrosis: objective airway-artery quantification
Kuo, W., de Bruijne, Marleen, Petersen, Jens, Nasserinejad, K., Ozturk, H., Chen, Y., Perez-Rovira, A. & Tiddens, H. A. W. M., Nov 2017, In: European Radiology. 27, 11, p. 4680-4689 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Developing and validating COVID-19 adverse outcome risk prediction models from a bi-national European cohort of 5594 patients
Jimenez-Solem, E., Petersen, T. S., Hansen, C., Hansen, C., Lioma, C., Igel, C., Boomsma, W., Krause, O., Lorenzen, S., Selvan, R., Petersen, J., Nyeland, M. E., Ankarfeldt, M. Z., Virenfeldt, G. M., Winther-Jensen, M., Linneberg, A., Ghazi, M. M., Detlefsen, N., Lauritzen, A. D., Smith, A. G. & 15 others, , 2021, In: Scientific Reports. 11, 1, 12 p., 3246.Research output: Contribution to journal › Journal article › Research › peer-review
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Detecting emphysema with multiple instance learning
Orting, S. N., Petersen, Jens, Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 23 May 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE, p. 510-513Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Crowdsourced emphysema assessment
Ørting, S. N., Cheplygina, V., Petersen, Jens, Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 2017, Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 6th Joint International Workshops, CVII-STENT 2017 and Second International Workshop, LABELS 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Cardoso, M. J., Arbel, T., Lee, S-L., Cheplygina, V., Balocco, S., Mateus, D., Zahnd, G., Maier-Hein, L., Dermirci, S., Granger, E., Duong, L., Carbonneau, M-A., Albarquoni, S. & Carneiro, G. (eds.). Springer, p. 126-135 10 p. (Lecture notes in computer science, Vol. 10552).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Chronic Obstructive Pulmonary Disease Quantification Using CT Texture Analysis and Densitometry: Results From the Danish Lung Cancer Screening Trial
Sørensen, L., Nielsen, Mads, Petersen, Jens, Pedersen, J. H., Dirksen, A. & de Bruijne, Marleen, 2020, In: American Journal of Roentgenology. 214, 6, p. 1269-1279Research output: Contribution to journal › Journal article › Research › peer-review
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Carotid artery wall segmentation in multispectral MRI by coupled optimal surface graph cuts
Arias-Lorza, A. M., Petersen, Jens, van Engelen, A., Selwaness, M., van der Lugt, A., J. Niessen, W. & de Bruijne, Marleen, 2016, In: IEEE Transactions on Medical Imaging. 35, 3, p. 901-911 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Carotid artery wall segmentation by coupled surface graph cuts
Arias, A., Petersen, Jens, van Engelen, A., Tang, H., Selwaness, M., Witteman, J. C. M., van der Lugt, A., Niessen, W. & de Bruijne, Marleen, 2013, Medical Computer Vision. Recognition techniques and applications in medical imaging: Second International MICCAI Workshop, MCV 2012, Nice, France, Revised Selected Papers. Menze, B. H., Langs, G., Lu, L., Montillo, A., Tu, Z. & Criminisi, A. (eds.). Springer, p. 38-47 10 p. (Lecture notes in computer science, Vol. 7766).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Carotid artery lumen segmentation in 3D free-hand ultrasound images using surface graph cuts
Lorza, A. M. A., Carvalho, D. D. B., Petersen, Jens, Dijk, A. C. V., Lugt, A. V. D., Niessen, W. J., Klein, S. & de Bruijne, Marleen, 2013, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer, p. 542-549 8 p. (Lecture notes in computer science, Vol. 8150).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Automatic airway-artery analysis on lung CT to quantify airway wall thickening and bronchiectasis
Perez-Rovira, A., Kuo, W., Petersen, Jens, Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, In: Medical Physics. 43, 10, p. 5736-5744 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Automated quantification of bronchiectasis, airway wall thickening and lumen tapering in chest CT
Perez-Rovira, A., Kuo, W., Petersen, Jens, A.W.M. Tiddens, H. & de Bruijne, Marleen, 2015. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
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Analysis of airways in computed tomography
Petersen, Jens, 2014, Department of Computer Science, Faculty of Science, University of Copenhagen. 135 p.Research output: Book/Report › Ph.D. thesis › Research
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An automatic system for segmentation, matching, anatomical labeling and measurement of airways from CT images
Petersen, Jens, Feragen, A., Owen, M., Lo, P., Wille, M. M. W., Thomsen, L. H., Dirksen, A. & de Bruijne, Marleen, 2013. 1 p.Research output: Contribution to conference › Poster › Research › peer-review
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Airway distensibility in chronic obstructive pulmonary disease – evaluation by CT airway segmentation and lung density measurement based on the Danish lung cancer screening trial
M. W. Wille, M., Petersen, Jens, Dirksen, A., Pedersen, J. J. H. & de Bruijne, Marleen, 2013, In: American Journal of Respiratory and Critical Care Medicine. 187, p. A2871 1 p.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
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A hierarchical scheme for geodesic anatomical labeling of airway trees
Feragen, A., Petersen, Jens, Owen, M., Lo, P. C. P., Thomsen, L., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2012, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2012: 15th International Conference, Nice, France, October 1-5, 2012, Proceedings, Part III. Ayache, N., Delingette, H., Golland, P. & Mori, K. (eds.). Springer, p. 147-155 9 p. (Lecture notes in computer science, Vol. 7512).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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A Cross-Center Smoothness Prior for Variational Bayesian Brain Tissue Segmentation
Kouw, W. M., Ørting, S. N., Petersen, Jens, Steenstrup Pedersen, Kim & de Bruijne, Marleen, 1 Jan 2019, Information Processing in Medical Imaging : 26th International Conference, IPMI 2019, Proceedings. Bao, S., Chung, A. C. S., Gee, J. C. & Yushkevich, P. A. (eds.). Springer, p. 360-371 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11492 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
ID: 22733621
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Geometric tree kernels: classification of COPD from airway tree geometry
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A hierarchical scheme for geodesic anatomical labeling of airway trees
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Quantitative airway analysis in longitudinal studies using groupwise registration and 4D optimal surfaces
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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