thw266 KU
Professor, Affiliate Professor
- 2006
High Rate of Chimeric Gene Origination by Retroposition in Plant Genomes
Wang, W., Zheng, H., Fan, C., Li, J., Shi, J., Cai, Z., KU, thw266, Liu, D., Zhang, J., Vang, S., Lu, Z., Wong, G. K., Long, M. & Wang, J., 2006, In: Plant Cell. 18, 8, p. 1791-1802 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2007
Identification and characterization of insect-specific proteins by genome data analysis
KU, thw266, Wang, H., Shi, J., Wang, X., Zheng, H., Wong, G. K., Clark, T., Wang, W., Wang, J. & Kang, L., 2007, In: B M C Genomics. 8, 11 p., 93.Research output: Contribution to journal › Journal article › Research › peer-review
- 2008
On the origin of new genes in Drosophila
Zhou, Q., KU, thw266, Zhang, Y., Xu, S., Zhao, R., Zhan, Z., Li, X., Ding, Y., Yang, S. & Wang, W., 2008, In: Genome Research. 18, 9, p. 1446-1455 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2010
A Young Drosophila Duplicate Gene Plays Essential Roles in Spermatogenesis by Regulating Several Y-Linked Male Fertility Genes
Ding, Y., Zhao, L., Yang, S., Jiang, Y., Chen, Y., Zhao, R., Zhang, Y., KU, thw266, Dong, Y., Yu, H., Zhou, Q. & Wang, W., 2010, In: PLOS Genetics. 6, 12, 12 p., e1001255.Research output: Contribution to journal › Journal article › Research › peer-review
Triangulation of the human, chimpanzee, and Neanderthal genome sequences identifies potentially compensated mutations
KU, thw266, Pei, Z., Krawczak, M., Ball, E. V., Mort, M., Kehrer-Sawatzki, H. & Cooper, D. N., 2010, In: Human Mutation. 31, 12, p. 1286-93 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2011
Cross-comparison of the genome sequences from human, chimpanzee, Neanderthal and a Denisovan hominin identifies novel potentially compensated mutations
KU, thw266, Pei, Z., Ball, E. V., Mort, M., Kehrer-Sawatzki, H. & Cooper, D. N., 2011, In: Human Genomics (Online). 5, 5, p. 453-484 32 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques
Yan, G., Zhang, G., Fang, X., Zhang, Y., Li, C., Ling, F., Cooper, D. N., Li, Q., Li, Y., van Gool, A. J., Du, H., Chen, J., Chen, R., Zhang, P., Huang, Z., Thompson, J. R., Meng, Y., Bai, Y., Wang, J., Zhuo, M. & 26 others, , 2011, In: Nature Biotechnology. 29, 11, p. 1019-1023 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Genome sequencing reveals insights into physiology and longevity of the naked mole rat
Kim, E. B., Fang, X., Fushan, A. A., Huang, Z., Lobanov, A. V., Han, L., Marino, S. M., Sun, X., Turanov, A. A., Yang, P., Yim, S. H., Zhao, X., Kasaikina, M. V., Stoletzki, N., Peng, C., Polak, P., Xiong, Z., Kiezun, A., Zhu, Y., Chen, Y. & 16 others, , 2011, In: Nature Photographer. 479, 7372, p. 223-7 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2012
Adaptive diversity of innate immune receptor family short pentraxins in Murinae
Li, Y., Robins, J. H., Ye, J., Huang, Z., Wen, Q. & KU, thw266, 2012, In: F E B S Letters. 586, 6, p. 798-803 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator
Bonasio, R., Li, Q., Lian, J., Mutti, N. S., Jin, L., Zhao, H., Zhang, P., Wen, P., Xiang, H., Ding, Y., Jin, Z., Shen, S. S., Wang, Z., Wang, W., Wang, J., Berger, S. L., Liebig, J., KU, thw266 & Reinberg, D., 2012, In: Current Biology. 22, 19, p. 1755-1764 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
The yak genome and adaptation to life at high altitude
Qiu, Q., Zhang, G., Ma, T., Qian, W., Wang, J., Ye, Z., Cao, C., Hu, Q., Kim, J., Larkin, D. M., Auvil, L., Capitanu, B., Ma, J., Lewin, H. A., Qian, X., Lang, Y., Zhou, R., Wang, L., Wang, K., Xia, J. & 29 others, , 2012, In: Nature Genetics. 44, 8, p. 946-951 6 p.Research output: Contribution to journal › Letter › Research › peer-review
Whole-genome sequence of Schistosoma haematobium
Young, N. D., Jex, A. R., Li, B., Liu, S., Yang, L., Xiong, Z., Li, Y., Cantacessi, C., Hall, R. S., Xu, X., Chen, F., Wu, X., Zerlotini, A., Oliveira, G., Hofmann, A., Zhang, G., Fang, X., Kang, Y., Campbell, B. E., Loukas, A. & 8 others, , 2012, In: Nature Genetics. 44, 2, p. 221-225 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2013
- Published
Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity
Zhang, G., Cowled, C., Shi, Z., Huang, Z., Bishop-Lilly, K. A., Fang, X., Wynne, J. W., Xiong, Z., Baker, M. L., Zhao, W., Tachedjian, M., Zhu, Y., Zhou, P., Jiang, X., Ng, J., Yang, L., Wu, L., Xiao, J., Feng, Y., Chen, Y. & 8 others, , 2013, In: Science (New York, N.Y.). 339, 6118Research output: Contribution to journal › Journal article › Research › peer-review
Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation
Pan, G., Xu, J., Li, T., Xia, Q., Liu, S-L., Zhang, G., Li, S., Li, C., Liu, H., Yang, L., Liu, T., Zhang, X., Wu, Z., Fan, W., Dang, X., Xiang, H., Tao, M., Li, Y., Hu, J., Li, Z. & 13 others, , 2013, In: BMC Genomics. 14, 14 p., 186.Research output: Contribution to journal › Journal article › Research › peer-review
Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication
Xiang, H., Li, X., Dai, F., Xu, X., Tan, A., Chen, L., KU, thw266, Ding, Y., Li, Q., Lian, J., Willden, A., Guo, Q., Xia, Q., Wang, J. & Wang, W., 2013, In: BMC Genomics. 14, 11 p., 646.Research output: Contribution to journal › Journal article › Research › peer-review
Deep parallel sequencing reveals conserved and novel miRNAs in gill and hepatopancreas of giant freshwater prawn
Tan, T. T., Chen, M., Harikrishna, J. A., Khairuddin, N., Shamsudin, M. I. M., KU, thw266 & Bhassu, S., 2013, In: Fish and Shellfish Immunology. 35, 4, p. 1061-1069 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Genome of Drosophila suzukii, the Spotted Wing Drosophila
Chiu, J. C., Jiang, X., Zhao, L., Hamm, C. A., Cridland, J. M., Saelao, P., Hamby, K. A., Lee, E. K., Kwok, R. S., KU, thw266, Zalom, F. G., Walton, V. M. & Begun, D. J., 2013, In: G3: Genes, Genomes, Genetics. 3, 12, p. 2257-2271 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
In-Depth Tanscriptomic Analysis on Giant Freshwater Prawns
Mohd-Shamsudin, M. I., Kang, Y., Lili, Z., Tan, T. T., Kwong, Q. B., Liu, H., KU, thw266, Othman, R. Y. & Bhassu, S., 2013, In: PLoS ONE. 8, 5, 14 p., e60839.Research output: Contribution to journal › Journal article › Research › peer-review
Reference-assisted chromosome assembly
Kim, J., Larkin, D. M., Cai, Q., Asan, Zhang, Y., Ge, R., Auvil, L., Capitanu, B., KU, thw266, Lewin, H. A. & Ma, J., 2013, In: PNAS. 110, 5, p. 1785-1790 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes: [plus] Erratum
Kocher, S. D., Li, C., Yang, W., Tan, H., Yi, S. V., Yang, X., Hoekstra, H. E., KU, thw266, Pierce, N. E. & Yu, D. W., 2013, In: Genome Biology. 14, 12, 14 p., R142 .Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan
Wang, Z., Pascual-Anaya, J., Zadissa, A., Li, W., Niimura, Y., Huang, Z., Li, C., White, S., Xiong, Z., Fang, D., Wang, B., Ming, Y., Chen, Y., Zheng, Y., Kuraku, S., Pignatelli, M., Herrero, J., Beal, K., Nozawa, M., Li, Q. & 14 others, , 2013, In: Nature Genetics. 45, 6, p. 701-706 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
The genomic consequences of adaptive divergence and reproductive isolation between species of manakins
Parchman, T. L., Gompert, Z., Braun, M. J., Brumfield, R. T., McDonald, D. B., Uy, J. A. C., KU, thw266, Jarvis, E. D., Schlinger, B. A. & Buerkle, C. A., 2013, In: Molecular Ecology. 22, 12, p. 3304-3317 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment
Evans, J. D., Brown, S. J., Hackett, K. J., Robinson, G., Richards, S., Lawson, D., Elsik, C., Coddington, J., Edwards, O., Emrich, S., Gabaldon, T., Goldsmith, M., Hanes, G., Misof, B., Muñoz-Torres, M., Niehuis, O., Papanicolaou, A., Pfrender, M., Poelchau, M., Purcell-Miramontes, M. & 7 others, , 2013, In: Journal of Heredity. 104, 5, p. 595-600 6 p.Research output: Contribution to journal › Review › Research › peer-review
- 2014
- Published
A flock of Genomes
KU, thw266, Jarvis, E. D. & Gilbert, M Thomas P, 2014, In: Science. 346, 6215, p. 1308-1309 2 p.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes
Fang, X., Seim, I., Huang, Z., Gerashchenko, M. V., Xiong, Z., Turanov, A. A., Zhu, Y., Lobanov, A. V., Fan, D., Yim, S. H., Yao, X., Ma, S., Yang, L., Lee, S-G., Kim, E. B., Bronson, R. T., Sumbera, R., Buffenstein, R., Zhou, X., Krogh, A. & 4 others, , 2014, In: Cell Reports. 8, 5, p. 1354-1364 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Advances in genome editing technology and its promising application in evolutionary and ecological studies
Chen, L., Tang, L., Xiang, H., Jin, L., Li, Q., Dong, Y., Wang, W. & KU, thw266, 2014, In: GigaScience. 3, 24, 10 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior
Li, Q., Wang, Z., Lian, J., Schiøtt, M., Jin, L., Zhang, P., Zhang, Y., Nygaard, S., Peng, Z., Zhou, Y., Deng, Y., Zhang, W., Boomsma, Jacobus J. & KU, thw266, 2014, In: Nature Communications. 5, 11 p., 4943.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genomic data of the Avian Phylogenomics Project
KU, thw266, Li, B., Li, C., Gilbert, M Thomas P, Jarvis, E. D., Wang, J. & Avian Genome Consortium, A. G. C., 2014, In: GigaScience. 3, 8 p., 26.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genomics reveals insights into avian genome evolution and adaptation
Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W. & 85 others, , 2014, In: Science. 346, 6215, p. 1311-1320 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complementary symbiont contributions to plant decomposition in a fungus-farming termite
Thomas-Poulsen, M., Hu, H., Li, C., Chen, Z., Xu, L., Otani, S., Nygaard, S., Nobre, T., Klaubauf, S., Schindler, P. M., Hauser, F., Pan, H., Yang, Z., Sonnenberg, A. S. M., de Beer, Z. W., Zhang, Y., Wingfield, M. J., Grimmelikhuijzen, C., de Vries, R. P., Korb, J. & 4 others, , 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 40, 6 p., 14500-14505.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complex evolutionary trajectories of sex chromosomes across bird taxa
Zhou, Q., Zhang, J., Bachtrog, D., An, N., Huang, Q., Jarvis, E. D., Gilbert, M Thomas P & KU, thw266, 2014, In: Science. 346, 6215, 8 p., 1246338.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Convergent transcriptional specializations in the brains of humans and song-learning birds
Pfenning, A. R., Hara, E., Whitney, O., Rivas, M. V., Wang, R., Roulhac, P. L., Howard, J. T., Wirthlin, M., Lovell, P. V., Ganapathy, G., Mouncastle, J., Moseley, M. A., Thompson, J. W., Soderblom, E. J., Iriki, A., Kato, M., Gilbert, M. T. P., Zhang, G., Bakken, T., Bongaarts, A. & 5 others, , 2014, In: Science. 346, 6215, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles
Greenwold, M. J., Bao, W., Jarvis, E. D., Hu, H., Li, C., Gilbert, M Thomas P, KU, thw266 & Sawyer, R. H., 2014, In: B M C Evolutionary Biology. 14, 16 p., 249.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Epigenetic modification and inheritance in sexual reversal of fish
Shao, C., Li, Q., Chen, S., Zhang, P., Lian, J., Hu, Q., Sun, B., Jin, L., Liu, S., Wang, Z., Zhao, H., Jin, Z., Liang, Z., Li, Y., Zheng, Q., Zhang, Y., Wang, J. & KU, thw266, 2014, In: Genome Research. 24, 4, p. 604-615 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence for a single loss of mineralized teeth in the common avian ancestor
Meredith, R. W., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D. & Springer, M. S., 2014, In: Science. 346, 6215, 6 p., 1254390.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary genomics and adaptive evolution of the hedgehog gene family (Shh, Ihh and Dhh) in vertebrates
Pereira, J., Johnson, W. E., O'Brien, S. J., Jarvis, E. D., KU, thw266, Gilbert, M Thomas P, Vasconcelos, V. & Antunes, A., 2014, In: PloS one. 9, 12, 35 p., e74132.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species
Li, S., Li, B., Cheng, C., Xiong, Z., Liu, Q., Lai, J., Carey, H. V., Zhang, Q., Zheng, H., Wei, S., Zhang, H., Chang, L., Liu, S., Zhang, S., Yu, B., Zeng, X., Hou, Y., Nie, W., Guo, Y., Chen, T. & 13 others, , 2014, In: Genome Biology (Online Edition). 15, 16 p., 557.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Low frequency of paleoviral infiltration across the avian phylogeny
Cui, J., Zhao, W., Huang, Z., Jarvis, E. D., Gilbert, M Thomas P, Walker, P. J., Holmes, E. C. & KU, thw266, 2014, In: Genome Biology (Online Edition). 15, 12, 13 p., 539.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular traces of alternative social organization in a termite genome
Terrapon, N., Li, C., Robertson, H. M., Ji, L., Meng, X., Booth, W., Chen, Z., Childers, C. P., Glastad, K. M., Gokhale, K., Gowin, J., Gronenberg, W., Hermansen, R. A., Hu, H., Hunt, B. G., Huylmans, A. K., Khalil, S. M. S., Mitchell, R. D., Munoz-Torres, M. C., Mustard, J. A. & 23 others, , 2014, In: Nature Communications. 5, 12 p., 3636.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes
You, X., Bian, C., Zan, Q., Xu, X., Liu, X., Chen, J., Wang, J., Qiu, Y., Li, W., Zhang, X., Sun, Y., Chen, S., Hong, W., Li, Y., Cheng, S., Fan, G., Shi, C., Liang, J., Tom Tang, Y., Yang, C. & 24 others, , 2014, In: Nature Communications. 5, 5594, 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears
Liu, S., Lorenzen, E., Fumagalli, M., Li, B., Harris, K., Xiong, Z., Zhou, L., Korneliussen, T. S., Somel, M., Babbitt, C., Wray, G., Li, J., He, W., Wang, Z., Fu, W., Xiang, X., Morgan, C. C., Doherty, A., O'Connell, M. J., McInerney, J. O. & 9 others, , 2014, In: Cell. 157, 4, p. 785-794 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Sensory Rewiring in an Echolocator: Genome-Wide Modification of Retinogenic and Auditory Genes in the Bat Myotis davidii
Hudson, N. J., Baker, M. L., Hart, N. S., Wynne, J. W., Gu, Q., Huang, Z., KU, thw266, Ingham, A. B., Wang, L. & Reverter, A., 2014, In: G3: Genes, Genomes, Genetics. 4, 10, p. 1825-1835 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Temporal genomic evolution of bird sex chromosomes
Wang, Z., Zhang, J., Yang, W., An, N., Zhang, P., KU, thw266 & Zhou, Q., 2014, In: B M C Evolutionary Biology. 14, 12 p., 250.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome of the clonal raider ant Cerapachys biroi
Oxley, P. R., Ji, L., Fetter-Pruneda, I., McKenzie, S. K., Li, C., Hu, H., KU, thw266 & Kronauer, D. J. C., 2014, In: Current Biology. 24, 4, p. 451-458 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
The locust genome provides insight into swarm formation and long-distance flight
Wang, X., Fang, X., Yang, P., Jiang, X., Jiang, F., Zhao, D., Li, B., Cui, F., Wei, J., Ma, C., Wang, Y., He, J., Luo, Y., Wang, Z., Guo, X., Guo, W., Wang, X., Zhang, Y., Yang, M., Hao, S. & 25 others, , 2014, In: Nature Communications. 5, 9 p., 2957.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., Vandewege, M. W., John, J. A. S., Capella-Gutierrez, S., Castoe, T. A., Kern, C., Fujita, M. K., Opazo, J. C., Jurka, J., Kojima, K. K., Caballero, J., Hubley, R. M., Smit, A. F., Platt, R. N., Lavoie, C. A. & 35 others, , 2014, In: Science. 346, 6215, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment
Li, C., Zhang, Y., Li, J., Kong, L., Hu, H., Pan, H., Xu, L., Deng, Y., Li, Q., Jin, L., Yu, H., Chen, Y., Liu, B., Yang, L., Liu, S., Zhang, Y., Lang, Y., Xia, J., He, W., Shi, Q. & 21 others, , 2014, In: GigaScience. 3, 27, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-genome analyses resolve early branches in the tree of life of modern birds
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G. & 85 others, , 2014, In: Science. 346, 6215, p. 1320-1331 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
High-coverage sequencing and annotated assemblies of the budgerigar genome
Ganapathy, G., Howard, J. T., Ward, J. M., Li, J., Li, B., Li, Y., Xiong, Y., Zhang, Y., Zhou, S., Schwartz, D. C., Schatz, M., Aboukhalil, R., Fedrigo, O., Bukovnik, L., Wang, T., Wray, G., Rasolonjatovo, I., Winer, R., Knight, J. R., Koren, S. & 4 others, , 8 Jul 2014, In: GigaScience. 3, 1, 11.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
- Published
A genomic comparison of two termites with different social complexity
Korb, J., Poulsen, Michael, Hu, H., Li, C., Boomsma, Jacobus J., KU, thw266 & Liebig, J., 2015, In: Frontiers in Genetics. 6, 12 p., 9.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient population genomics and the study of evolution
Parks, M., Subramanian, S., Baroni, C., Salvatore, M. C., KU, thw266, Millar, C. D. & Lambert, D. M., 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Avianbase: a community resource for bird genomics
Eöry, L., Gilbert, M Thomas P, Li, C., Li, B., Archibald, A., Aken, B. L., KU, thw266, Jarvis, E., Flicek, P. & Burt, D. W., 2015, In: Genome Biology (Online Edition). 16, 4 p., 21.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Bird sequencing project takes off
KU, thw266, Rahbek, Carsten, Graves, G. R., Jarvis, E. D. & Gilbert, M Thomas P, 2015, In: Nature. 522, 7554, p. 34 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds
Borges, R., Khan, I., Johnson, W. E., Gilbert, M Thomas P, KU, thw266, Jarvis, E. D., O'Brien, S. J. & Antunes, A., 2015, In: B M C Genomics. 16, 13 p., 751 .Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic legacy of the African cheetah, Acinonyx jubatus
Dobrynin, P., Liu, S., Tamazian, G., Xiong, Z., Yurchenko, A. A., Krasheninnikova, K., Kliver, S., Schmidt-Kuentzel, A., Koepfli, K-P., Johnson, W., Kuderna, L. F. K., Garcia-Perez, R., de Manuel, M., Godinez, R., Komissarov, A., Makunin, A., Brukhin, V., Qiu, W., Zhou, L., Li, F. & 15 others, , 2015, In: Genome Biology (Online Edition). 16, 19 p., 277.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic signatures of evolutionary transitions from solitary to group living
Kapheim, K. M., Pan, H., Li, C., Salzberg, S. L., Puiu, D., Magoc, T., Robertson, H. M., Hudson, M. E., Venkat, A., Fischman, B. J., Hernandez, A., Yandell, M., Ence, D., Holt, C., Yocum, G. D., Kemp, W. P., Bosch, J., Waterhouse, R. M., Zdobnov, E. M., Stolle, E. & 32 others, , 2015, In: Science (New York, N.Y.). 348, 6239, p. 1139-1143 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps
Georges, A., Li, Q., Lian, J., O'Meally, D., Deakin, J., Wang, Z., Zhang, P., Fujita, M., Patel, H. R., Holleley, C. E., Zhou, Y., Zhang, X., Matsubara, K., Waters, P., Graves, J. A. M., Sarre, S. D. & KU, thw266, 2015, In: GigaScience. 4, 10 p., 45.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Improving the ostrich genome assembly using optical mapping data
Zhang, J., Li, C., Zhou, Q. & KU, thw266, 2015, In: GigaScience. 4, 3 p., 24.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Olfactory receptor subgenomes linked with broad ecological adaptations in sauropsida
Khan, I., Yang, Z., Maldonado, E., Li, C., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2015, In: MOLECULAR BIOLOGY AND EVOLUTION . 32, 11, p. 2832-2843 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Outbred genome sequencing and CRISPR/Cas9 gene editing in butterflies
Li, X., Fan, D., Zhang, W., Liu, G., Zhang, L., Zhao, L., Fang, X., Chen, L., Dong, Y., Chen, Y., Ding, Y., Zhao, R., Feng, M., Zhu, Y., Feng, Y., Jiang, X., Zhu, D., Xiang, H., Feng, X., Li, S. & 4 others, , 2015, In: Nature Communications. 6, 10 p., 8212.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogenomic analyses data of the avian phylogenomics project
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Alfaro Nuñez, L. A., Narula, N., Liu, L., Burt, D., Ellegren, H., Edwards, S. V., Stamatakis, A. & 7 others, , 2015, In: GigaScience. 4, 9 p., 4.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication
Dong, Y., Zhang, X., Xie, M., Arefnezhad, B., Wang, Z., Wang, W., Feng, S., Huang, G., Guan, R., Shen, W., Bunch, R., McCulloch, R., Li, Q., Li, B., KU, thw266, Xu, X., Kijas, J. W., Salekdeh, G. H., Wang, W. & Jiang, Y., 2015, In: B M C Genomics. 16, 11 p., 431.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Response to Comment on “Whole-genome analyses resolve early branches in the tree of life of modern birds”
Cracraft, J., Houde, P., Ho, S. Y. W., Mindell, D. P., Fjeldså, Jon, Lindow, Bent Erik Kramer, Edwards, S. V., Rahbek, Carsten, Mirarab, S., Warnow, T., Gilbert, M Thomas P, KU, thw266, Braun, E. L. & Jarvis, E. D., 2015, In: Science. 349, 6255, p. 1460b 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Temporal dynamics of avian populations during pleistocene revealed by whole-genome sequences
Nadachowska-Brzyska, K., Li, C., Smeds, L., KU, thw266 & Ellegren, H., 2015, In: Current Biology. 25, 10, p. 1375-1380 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Genome 10K Project: a way forward
Koepfli, K-P., Paten, B., O'Brien, S. J., Antunes, A., Belov, K., Bustamante, C., Castoe, T. A., Clawson, H., Crawford, A. J., Diekhans, M., Distel, D., Durbin, R., Earl, D., Fujita, M. K., Gamble, T., Georges, A., Gemmell, N., Gilbert, M. T. P., Graves, J. M., Green, R. E. & 25 others, , 2015, In: Annual Review of Animal Biosciences. 3, p. 57-111 55 p.Research output: Contribution to journal › Review › Research › peer-review
The Genome of Dendrobium officinale Illuminates the Biology of the Important Traditional Chinese Orchid Herb
Yan, L., Wang, X., Liu, H., Tian, Y., Lian, J., Yang, R., Hao, S., Wang, X., Yang, S., Li, Q., Qi, S., Kui, L., Okpekum, M., Ma, X., Zhang, J., Ding, Z., KU, thw266, Wang, W., Dong, Y. & Sheng, J., 2015, In: Molecular Plant. 8, 6, p. 922-934 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes
Sun, Y-B., Xiong, Z-J., Xiang, X-Y., Liu, S-P., Zhou, W-W., Tu, X-L., Zhong, L., Wang, L., Wu, D-D., Zhang, B-L., Zhu, C-L., Yang, M-M., Chen, H-M., Li, F., Zhou, L., Feng, S-H., Huang, C., Zhang, G., Irwin, D., Hillis, D. M. & 5 others, , 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 11, p. E1257-E1262 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
Bone-associated gene evolution and the origin of flight in birds
Machado, J. P., Johnson, W. E., Gilbert, M Thomas P, KU, thw266, Jarvis, E. D., O'Brien, S. J. & Antunes, A., 2016, In: BMC Genomics. 17, 15 p., 371.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome of the leopard gecko, Eublepharis macularius
Xiong, Z., Li, F., Li, Q., Zhou, L., Gamble, T., Zheng, J., Kui, L., Li, C., Li, S., Yang, H. & KU, thw266, 2016, In: GigaScience. 5, 6 p., 47.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper
Yin, W., Wang, Z., Li, Q., Lian, J., Zhou, Y., Lu, B., Jin, L., Qiu, P., Zhang, P., Zhu, W., Wen, B., Huang, Y., Lin, Z., Qiu, Bitao, Su, X., Yang, H., KU, thw266, Yan, G. & Zhou, Q., 2016, In: Nature Communications. 7, 11 p., 13107.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RES-Scanner: a software package for genome-wide identification of RNA-editing sites
Wang, Z., Lian, J., Li, Q., Zhang, P., Zhou, Y., Zhan, X. & KU, thw266, 2016, In: GigaScience. 5, 9 p., 37.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reciprocal genomic evolution in the ant-fungus agricultural symbiosis
Nygaard, S., Hu, H., Li, C., Schiøtt, M., Chen, Z., Yang, Z., Xie, Q., Ma, C., Deng, Y., Dikow, R. B., Rabeling, C., Nash, David Richard, Wcislo, W. T., Brady, S. G., Schultz, T. R., KU, thw266 & Boomsma, Jacobus J., 2016, In: Nature Communications. 7, 9 p., 12233.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate
Pan, H., Yu, H., Ravi, V., Li, C., Lee, A. P., Lian, M. M., Tay, B., Brenner, S., Wang, J., Yang, H., KU, thw266 & Venkatesh, B., 2016, In: GigaScience. 5, 12 p., 36.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole genome identification, phylogeny and evolution of the cytochrome P450 family 2 (CYP2) sub-families in birds
Almeida, D., Maldonado, E., Khan, I., Silva, L., Gilbert, M Thomas P, KU, thw266, Jarvis, E. D., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2016, In: Genome Biology and Evolution. 8, 4, p. 1115-1131 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Draft genome of the milu (Elaphurus davidianus)
Zhang, C., Chen, L., Zhou, Y., Wang, K., Chemnick, L. G., Ryder, O. A., Wang, W., KU, thw266 & Qiu, Q., 2017, In: GigaScience. 7, 2, p. 1-6 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
Shao, C., Bao, B., Xie, Z., Chen, X., Li, B., Jia, X., Yao, Q., Ortí, G., Li, W., Li, X., Hamre, K., Xu, J., Wang, L., Chen, F., Tian, Y., Schreiber, A. M., Wang, N., Wei, F., Zhang, J., Dong, Z. & 16 others, , 1 Jan 2017, In: Nature Genetics. 49, 1, p. 119-124 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features
Seki, R., Li, C., Fang, Q., Hayashi, S., Egawa, S., Hu, J., Xu, L., Pan, H., Kondo, M., Sato, T., Matsubara, H., Kamiyama, N., Kitajima, K., Saito, D., Liu, Y., Gilbert, T., Zhou, Q., Xu, X-Z., Shiroishi, T., Irie, N. & 2 others, , 6 Feb 2017, In: Nature Communications. 8, 14 p., 14229.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sequencing, de novo assembling, and annotating the genome of the endangered Chinese crocodile lizard Shinisaurus crocodilurus
Gao, J., Li, Q., Wang, Z., Zhou, Y., Martelli, P., Li, F., Xiong, Z., Wang, J., Yang, H. & KU, thw266, Jul 2017, In: GigaScience. 6, 7, p. 1-6 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster
Hargreaves, A. D., Zhou, L., Christensen, J., Marlétaz, F., Liu, S., Li, F., Jansen, P. G., Spiga, E., Hansen, M. T., Pedersen, S. V. H., Biswas, S., Serikawa, K., Fox, B. A., Taylor, W. R., Mulley, J. F., KU, thw266, Heller, R. S. & Holland, P. W. H., 18 Jul 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 29, p. 7677-7682 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, C., Geng, C., Liu, Shanlin, Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Zhang, W., Fu, S., Vieira, Filipe Garrett, Germonpré, M., Bocherens, H., Fedorov, S., Petersen, Bent, Sicheritz-Pontén, T., Marques-Bonet, T., KU, thw266, Jiang, H. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Global Ant Genomics Alliance (GAGA)
Boomsma, Jacobus J., Brady, S. G., Dunn, Rob, Gadau, J., Heinze, J., Keller, L., Moreau, C. S., Sanders, N., Schrader, Lukas, Schultz, T. R., Sundström, L., Ward, P. S., Wcislo, W. T. & KU, thw266, Oct 2017, In: Myrmecological News. 25, p. 61-66 6 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Constrained vertebrate evolution by pleiotropic genes
Hu, H., Uesaka, M., Guo, S., Shimai, K., Lu, T., Li, F., Fujimoto, S., Ishikawa, M., Liu, S., Sasagawa, Y., KU, thw266, Kuratani, S., Yu, J., Kusakabe, T. G., Khaitovich, P. & Irie, N., Nov 2017, In: Nature Ecology and Evolution. 1, 11, p. 1722-1730 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee
Avalos, A., Pan, H., Li, C., Acevedo-Gonzalez, J. P., Rendon, G., Fields, C. J., Brown, P. J., Giray, T., Robinson, G. E., Hudson, M. E. & KU, thw266, 16 Nov 2017, In: Nature Communications. 8, 9 p., 1550.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome of the Marco Polo Sheep (Ovis ammon polii)
Yang, Y., Wang, Y., Zhao, Y., Zhang, X., Li, R., Chen, L., KU, thw266, Jiang, Y., Qiu, Q., Wang, W., Wei, H. & Wang, K., Dec 2017, In: GigaScience. 6, 12, 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly
Rando, H. M., Farre, M., Robson, M. P., Won, N. B., Johnson, J. L., Buch, R., Bastounes, E. R., Xiang, X., Feng, S., Liu, S., Xiong, Z., Kim, J., KU, thw266, Trut, L. N., Larkin, D. M. & Kukekova, A. V., 2018, In: Genes. 9, 6, 21 p., 308.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Earth BioGenome Project: sequencing life for the future of life
Lewin, H. A., Robinson, G. E., Kress, W. J., Baker, W. J., Coddington, J., Crandall, K. A., Durbin, R., Edwards, S. V., Forest, F., Gilbert, M. T. P., Goldstein, M. M., Grigoriev, I. V., Hackett, K. J., Haussler, D., Jarvis, E. D., Johnson, W. E., Patrinos, A., Richards, S., Castilla-Rubio, J. C., van Sluys, M-A. & 4 others, , 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 17, p. 4325-4333 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic Takeover by Transposable Elements in the Strawberry Poison Frog
Rogers, R. L., Zhou, L., Chu, C., Márquez, R., Corl, A., Linderoth, T., Freeborn, L., MacManes, M. D., Xiong, Z., Zheng, J., Guo, C., Xun, X., Kronforst, M. R., Summers, K., Wu, Y., Yang, H., Richards-Zawacki, C. L., KU, thw266 & Nielsen, R., 2018, In: MOLECULAR BIOLOGY AND EVOLUTION . 35, 12, p. 2913-2927Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat
Zepeda Mendoza, M. L., Xiong, Z., Escalera-Zamudio, M., Runge, A. K. W., Thézé, J., Streicker, D., Frank, H. K., Loza-Rubio, E., Liu, S., Ryder, O. A., Castruita, J. A. S., Katzourakis, A., Pacheco, G. A., Taboada, B., Löber, U., Pybus, O. G., Li, Y., Rojas-Anaya, E., Bohmann, K., Carmona Baez, A. & 9 others, , 2018, In: Nature Ecology & Evolution. 2, 4, p. 659-668 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours
Kukekova, A. V., Johnson, J. L., Xiang, X., Feng, S., Liu, S., Rando, H. M., Kharlamova, A. V., Herbeck, Y., Serdyukova, N. A., Xiong, Z., Beklemischeva, V., Koepfli, K-P., Gulevich, R. G., Vladimirova, A. V., Hekman, J. P., Perelman, P. L., Graphodatsky, A. S., O'Brien, S. J., Wang, X., Clark, A. G. & 3 others, , 2018, In: Nature Ecology & Evolution. 2, 9, p. 1479-1491Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The bird's-eye view on chromosome evolution
KU, thw266, 2018, In: Genome Biology. 19, p. 1-3 201.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The first AsiaEvo conference, connecting Asian evolutionary biologists to the world
KU, thw266, 2018, In: National Science Review. 5, 5, p. 614-616Research output: Contribution to journal › Editorial › Research › peer-review
The genome of the golden apple snail Pomacea canaliculata provides insight into stress tolerance and invasive adaptation
Liu, C., Zhang, Y., Ren, Y., Wang, H., Li, S., Jiang, F., Yin, L., Qiao, X., KU, thw266, Qian, W., Liu, B. & Fan, W., 2018, In: GigaScience. 7, 9, 13 p., giy101.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Towards reconstructing the ancestral brain gene-network regulating caste differentiation in ants
Qiu, Bitao, Larsen, Rasmus Stenbak, Chang, N., Wang, J., Boomsma, Jacobus J. & KU, thw266, 2018, In: Nature Ecology & Evolution. 2, 11, p. 1782-1791Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
31º South: The physiology of adaptation to arid conditions in a passerine bird
Ribeiro, Â. M., Puetz, Lara Christine, Pattinson, N. B., Dalén, L., Deng, Y., KU, thw266, Rodrigues da Fonseca, Rute Andreia, Smit, B. & Gilbert, M Thomas P, 2019, In: Molecular Ecology. 28, 16, p. 3709-3721 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari Desert
Farré, M., Li, Q., Zhou, Y., Damas, J., Chemnick, L. G., Kim, J., Ryder, O. A., Ma, J., KU, thw266, Larkin, D. M. & Lewin, H. A., 2019, In: GigaScience. 8, 2, p. 1-8 giy162.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype
Borges, R., Fonseca, J., Gomes, C., Johnson, W. E., O'Brien, S. J., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D. & Antunes, A., 2019, In: Genome Biology and Evolution. 11, 8, p. 2244-2255Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Phylogenomics, a Stepping Stone for Bird Biodiversity Studies
Stiller, Josefin & KU, thw266, 2019, In: Diversity. 11, 7, 19 p., 115.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative study on pattern recognition receptors in non-teleost ray-finned fishes and their evolutionary significance in primitive vertebrates
He, Y., Pan, H., KU, thw266 & He, S., 2019, In: Science China Life Sciences. 62, 4, p. 566-578Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detoxification Genes Differ Between Cactus-, Fruit-, and Flower-Feeding Drosophila
Rane, R. V., Clarke, D. F., Pearce, S. L., KU, thw266, Hoffmann, A. A. & Oakeshott, J. G., 2019, In: The Journal of Heredity. 110, 1, p. 80-91 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft Genome Assembly and Population Genetics of an Agricultural Pollinator, the Solitary Alkali Bee (Halictidae: Nomia melanderi)
Kapheim, K. M., Pan, H., Li, C., Blatti, C., Harpur, B. A., Ioannidis, P., Jones, B. M., Kent, C. F., Ruzzante, L., Sloofman, L., Stolle, E., Waterhouse, R. M., Zayed, A., KU, thw266 & Wcislo, W. T., 2019, In: G3: Genes, Genomes, Genetics (Bethesda). 9, 3, p. 625-634Research output: Contribution to journal › Journal article › Research › peer-review
ID: 40294134
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Molecular traces of alternative social organization in a termite genome
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Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior
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Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment
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