Tom Gilbert

Tom Gilbert

Professor

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    ORCID: 0000-0002-5805-7195

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    1. Published

      The role of the gut microbiota in the dietary niche expansion of fishing bats

      Aizpurua Arrieta, Ostaizka, Jessen, Lasse Nyholm, Morris, E., Chaverri, G., Montalvo, L. G. H., Flores-Martinez, J. J., Lin, A., Razgour, O., Gilbert, M Thomas P & Alberdi, Antton, 2021, In: BMC Animal Microbiome. 3, 14 p., 76.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. E-pub ahead of print

      Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data

      Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.

      Research output: Contribution to journal › Review › Research › peer-review

    3. Published

      Unravelling animal–microbiota evolution on a chip

      Aizpurua Arrieta, Ostaizka, Blijleven, Kees, Trivedi, Urvish, Gilbert, M Thomas P & Alberdi, Antton, 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.

      Research output: Contribution to journal › Review › Research › peer-review

    4. Published

      Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding

      Aizpurua Arrieta, Ostaizka, Budinski, I., Georgiakakis, P., Gopalakrishnan, Shyam, Ibanez, C., Mata, V., Rebelo, H., Russo, D., Szodoray-Paradi, F., Zhelyazkova, V., Zrncic, V., Gilbert, M Thomas P & Alberdi, Antton, 2018, In: Molecular Ecology. 27, 3, p. 815-825 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Do vertebrate gut metagenomes confer rapid ecological adaptation?

      Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Zepeda Mendoza, M. L. & Gilbert, M Thomas P, Sep 2016, In: Trends in Ecology & Evolution. 31, 9, p. 689-699 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Disentangling host–microbiota complexity through hologenomics

      Alberdi, Antton, Andersen, Sandra Breum, Limborg, Morten Tønsberg, Dunn, Rob & Gilbert, M Thomas P, 2022, In: Nature Reviews Genetics. 23, 5, p. 281-297 17 p.

      Research output: Contribution to journal › Review › Research › peer-review

    7. Published

      Contrasting population-level responses to Pleistocene climatic oscillations in an alpine bat revealed by complete mitochondrial genomes and evolutionary history inference

      Alberdi, A., Gilbert, M Thomas P, Razgour, O., Aizpurua, O., Aihartza, J. & Garin, I., 2015, In: Journal of Biogeography. 42, 9, p. 1689-1700 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      A guide to the application of Hill numbers to DNA-based diversity analyses

      Alberdi, Antton & Gilbert, M Thomas P, 2019, In: Molecular Ecology Resources. 19, 4, p. 804-817 14 p.

      Research output: Contribution to journal › Review › Research › peer-review

    9. Published

      DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats

      Alberdi, Antton, Razgour, O., Aizpurua Arrieta, Ostaizka, Novella-Fernandez, R., Aihartza, J., Budinski, I., Garin, I., Ibanez, C., Izagirre, E., Rebelo, H., Russo, D., Vlaschenko, A., Zhelyazkova, V., Zrncic, V. & Gilbert, M Thomas P, 2020, In: Nature Communications. 11, 8 p., 1154.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Scrutinizing key steps for reliable metabarcoding of environmental samples

      Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Gilbert, M Thomas P & Bohmann, Kristine, 2018, In: Methods in Ecology and Evolution. 9, 1, p. 134-147 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Promises and pitfalls of using high-throughput sequencing for diet analysis

      Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Gopalakrishnan, Shyam, Lynggaard, Christina Islas, Nielsen, M. & Gilbert, M Thomas P, Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 327-348

      Research output: Contribution to journal › Review › Research › peer-review

    12. Published

      Non-invasive surveys of mammalian viruses using environmental DNA

      Alfano, N., Dayaram, A., Axtner, J., Tsangaras, K., Kampmann, Marie-Louise, Mohamed, A., Wong, S. T., Gilbert, M Thomas P, Wilting, A. & Greenwood, A. D., 2021, In: Methods in Ecology and Evolution. 12, 10, p. 1941-1952

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Further evidence of Chelonid herpesvirus 5 (ChHV5) latency: high levels of ChHV5 DNA detected in clinically healthy marine turtles

      Alfaro Nuñez, L. A., Bojesen, Anders Miki, Bertelsen, Mads Frost, Wales, N., Balazs, G. H. & Gilbert, M Thomas P, 27 Jul 2016, In: PeerJ. 4, 16 p., e2274.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Global distribution of Chelonid fibropapilloma-associated herpesvirus among clinically healthy sea turtles

      Alfaro Nuñez, L. A., Bertelsen, Mads Frost, Bojesen, Anders Miki, Rasmussen, I., Zepeda Mendoza, M. L., Olsen, Morten Tange & Gilbert, M Thomas P, 2014, In: B M C Evolutionary Biology. 14, 11 p., 206.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Validation of a sensitive PCR assay for the detection of Chelonid fibropapilloma-associated herpesvirus in latent turtle infections

      Alfaro Nuñez, L. A. & Gilbert, M Thomas P, Sep 2014, In: Journal of Virological Methods. 206, p. 38-41 4 p.

      Research output: Contribution to journal › Letter › Research › peer-review

    16. Published

      Extinct New Zealand megafauna were not in decline before human colonization

      Allentoft, Morten Erik, Heller, Rasmus, Oskam, C. L., Lorenzen, Eline, Hale, M. L., Gilbert, M Thomas P, Jacomb, C., Holdaway, R. N. & Bunce, M., 2014, In: Proceedings of the National Academy of Sciences USA (PNAS). 111, 13, p. 4922-4927 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

      Allentoft, Morten Erik, Collins, M., Harker, D., Haile, J., Oskam, C. L., Hale, M. L., Campos, P., Samaniego Castruita, J. A., Gilbert, M Thomas P, Willerslev, Eske, Zhang, G., Scofield, R. P., Holdaway, R. N. & Bunce, M., 2012, In: Proceedings of the Royal Society B: Biological Sciences. 279, 1748, p. 4724-4733 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Profiling the dead: generating microsatellite data from fossil bones of extinct megafauna—protocols, problems, and prospects

      Allentoft, Morten Erik, Oskam, C. L., Houston, J., Hale, M. L., Gilbert, M Thomas P, Rasmussen, M., Spencer, P., Jacomb, C., Willerslev, Eske, Holdaway, R. N. & Bunce, M., 2011, In: PLoS ONE. 6, 1, 11 p., e16670.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data

      Allentoft, Morten Erik, Schuster, S. C., Holdaway, R. N., Hale, M. L., McLay, E., Oskam, C. L., Gilbert, M Thomas P, Spencer, P., Willerslev, Eske & Bunce, M., 2009, In: BioTechniques. 46, 3, p. 195-200 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Whole genome identification, phylogeny and evolution of the cytochrome P450 family 2 (CYP2) sub-families in birds

      Almeida, D., Maldonado, E., Khan, I., Silva, L., Gilbert, M Thomas P, KU, thw266, Jarvis, E. D., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2016, In: Genome Biology and Evolution. 8, 4, p. 1115-1131 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Parallel adaptation of rabbit populations to myxoma virus

      Alves, J. M., Carneiro, M., Cheng, J. Y., Matos, A. L. D., Rahman, M. M., Loog, L., Campos, P. F., Wales, N., Eriksson, A., Manica, A., Strive, T., Graham, S. C., Afonso, S., Bell, D. J., Belmont, L., Day, J. P., Fuller, S. J., Marchandeau, S., Palmer, W. J., Queney, G. & 8 others, Surridge, A. K., Vieira, Filipe Garrett, McFadden, G., Nielsen, Rasmus, Gilbert, M Thomas P, Esteves, P. J., Ferrand, N. & Jiggins, F. M., 2019, In: Science. 363, 6433

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic

      Ameen, C., Feuerborn, T. R., Brown, S. K., Linderholm, A., Hulme-Beaman, A., Lebrasseur, O., Sinding, M-H. S., Lounsberry, Z. T., Lin, A. T., Appelt, M., Bachmann, L., Betts, M., Britton, K., Darwent, J., Dietz, R., Fredholm, M., Gopalakrishnan, S., Goriunova, O. I., Grønnow, B., Haile, J. & 39 others, Hallsson, J. H., Harrison, R., Heide-Jørgensen, M. P., Knecht, R., Losey, R. J., Masson-MacLean, E., McGovern, T. H., McManus-Fry, E., Meldgaard, Morten, Midtdal, Å., Moss, M. L., Nikitin, I. G., Nomokonova, T., Pálsdóttir, A. H., Perri, A., Popov, A. N., Rankin, L., Reuther, J. D., Sablin, M., Schmidt, A. L., Shirar, S., Smiarowski, K., Sonne, C., Stiner, M. C., Vasyukov, M., West, C. F., Ween, G. B., Wennerberg, S. E., Wiig, Ø., Woollett, J., Dalén, L., Hansen, Anders Johannes, Gilbert, M Thomas P, Sacks, B. N., Frantz, L., Larson, G., Dobney, K., Darwent, C. M. & Evin, A., 2019, In: Proceedings. Biological sciences. 286, 1916, p. 20191929

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity

      Andersen, K., Bird, K. L., Rasmussen, M., Haile, James Seymour, Breuning-Madsen, H., Kjær, Kurt H., Orlando, L. A. A., Gilbert, M Thomas P & Willerslev, Eske, 2012, In: Molecular Ecology. 21, 8, p. 1966-1979 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates

      Andrade, P., Gazda, M. A., Araújo, P. M., Afonso, S., Rasmussen, Jacob Agerbo, Marques, C. I., Lopes, R. J., Gilbert, M Thomas P & Carneiro, M., 2021, In: PLOS Genetics. 17, 2, 16 p., 1009404.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Dirt, dates and DNA: OSL and radiocarbon chronologies of perennially-frozen sediments in Siberia, and their implications for sedimentary ancient DNA studies

      Arnold, L. J., Roberts, R. G., MacPhee, R. D. E., Haile, James Seymour, Brock, F., Möller, P., Froese, D. G., Tikhonov, A. N., Chivas, A. R., Gilbert, M Thomas P & Willerslev, Eske, 2011, In: Boreas. 40, 3, p. 417-445 29 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 12980