Jonathan Jan Ilve Thorsen

Jonathan Jan Ilve Thorsen

ORCID: 0000-0003-0200-0461

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  1. Published

    Escherichia coli CRISPR arrays from early life fecal samples preferentially target prophages

    Dion, M. B., Shah, S. A., Deng, Ling, Thorsen, Jonathan Jan Ilve, Stokholm, Jakob, Krogfelt, K. A., Schjørring, S., Horvath, P., Allard, A., Nielsen, Dennis Sandris, Petit, M. A. & Moineau, S., 2024, In: The ISME Journal. 18, 1, 9 p., wrae005.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Amplicon sequencing demonstrates comparable follicular mycobiomes in patients with hidradenitis suppurativa compared with healthy controls

    Ring, H. C., Thorsen, Jonathan Jan Ilve, Fuursted, K., Bjarnsholt, Thomas, Bay, Lene, Egeberg, Alexander, Ingham, Andreas, Vedel Nielsen, H., Frew, J. W., Saunte, Ditte Marie, Thomsen, Simon Francis & Jemec, Gregor, 2022, In: Journal of the European Academy of Dermatology and Venereology. 36, 7, p. e580-e583 4 p.

    Research output: Contribution to journal › Comment/debate › Research

  3. Published

    Antibiotics in Pregnancy Increase Children's Risk of Otitis Media and Ventilation Tubes

    Pedersen, T. M., Stokholm, Jakob, Thorsen, Jonathan Jan Ilve, Mora-Jensen, A. C. & Bisgaard, H., Apr 2017, In: The Journal of Pediatrics. 183, p. 153-158.e1

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Asthma and Wheeze Severity and the Oropharyngeal Microbiota in Children and Adolescents

    Thorsen, J., Stokholm, J., Rasmussen, M. A., Roggenbuck-Wedemeyer, M., Vissing, N. H., Mortensen, M. S., Brejnrod, A. D., Fleming, L., Bush, A., Roberts, G., Singer, F., Frey, U., Hedlin, G., Nordlund, B., Murray, C. S., Abdel-Aziz, M. I., Hashimoto, S., van Aalderen, W., Maitland-van der Zee, A. H., Shaw, D. & 13 others, Fowler, S. J., Sousa, A., Sterk, P. J., Chung, K. F., Adcock, I. M., Djukanovic, R., Auffray, C., Bansal, A. T., Wagers, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes & Bisgaard, H., 2022, In: Annals of the American Thoracic Society. 19, 12, p. 2031-2043 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Cadherin-related Family Member 3 Genetics and Rhinovirus C Respiratory Illnesses

    Bønnelykke, Klaus, Coleman, A. T., Evans, M. D., Thorsen, Jonathan Jan Ilve, Waage, J., Vissing, N. H., Carlsson, C. J., Stokholm, Jakob, Chawes, Bo Lund Krogsgaard, Jessen, L. E., Fischer, T. K., Bochkov, Y. A., Ober, C., Lemanske, R. F., Jackson, D. J., Gern, J. E. & Bisgaard, H., 2018, In: American Journal of Respiratory and Critical Care Medicine. 197, 5, p. 589-594 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Can breastfeeding promote an antibiotic-resilient microbiome?

    Stokholm, Jakob & Thorsen, Jonathan Jan Ilve, 2023, In: Med. 4, 2, p. 67-68 2 p.

    Research output: Contribution to journal › Comment/debate › Research

  7. Published

    Cesarean section changes neonatal gut colonization

    Stokholm, Jakob, Thorsen, Jonathan Jan Ilve, Chawes, B. L., Schjørring, S., Krogfelt, K. A., Bønnelykke, Klaus & Bisgaard, H., Sep 2016, In: Journal of Allergy and Clinical Immunology. 138, 3, p. 881-889.e2

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Clinically-suspected cast nephropathy: A retrospective, national, real-world study

    Szabo, A. G., Thorsen, Jonathan Jan Ilve, Iversen, K. F., Hansen, C. T., Teodorescu, E. M., Pedersen, S. B., Flaeng, S. B., Strandholdt, C., Frederiksen, M., Vase, M. Ø., Frølund, U. C., Krustrup, D., Plesner, T. & Vangsted, Annette Juul, 2020, In: American Journal of Hematology. 95, 11, p. 1352-1360 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma

    Stokholm, Jakob, Thorsen, Jonathan Jan Ilve, Blaser, M. J., Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Christensen, E. D., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Brix, S., Mortensen, M. S., Brejnrod, A., Vestergaard, G., Trivedi, Urvish, Sørensen, Søren Johannes & Bisgaard, H., 2020, In: Science Translational Medicine. 12, 569, 14 p., eaax9929.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Determinants of neurodevelopment in early childhood - results from the Copenhagen Prospective Studies on Asthma in Childhood (COPSAC2010 ) Mother-Child Cohort

    Bjarnadóttir, E., Stokholm, Jakob, Chawes, Bo Lund Krogsgaard, Thorsen, Jonathan Jan Ilve, Mora-Jensen, A. R. C., Deleuran, M., Bønnelykke, Klaus, Lauritzen, Lotte & Bisgaard, H., 2019, In: Acta Paediatrica. 108, 9, p. 1632-1641 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Early life bacterial airway colonization, local immune mediator response and risk of otitis media

    Christensen, E. D., Thorsen, Jonathan Jan Ilve, Stokholm, Jakob, Pedersen, T. M., Brix, S., Krogfelt, K. A., Schjørring, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Bisgaard, H. & Rasmussen, Morten Arendt, 2020, In: Journal of Medical Microbiology. 69, 8, p. 1124–1131 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Ecological succession in the vaginal microbiota during pregnancy and birth

    Rasmussen, Morten Arendt, Thorsen, Jonathan Jan Ilve, Dominguez-Bello, M. G., Blaser, M. J., Mortensen, M. S., Brejnrod, A. D., Shah, S. A., Hjelmsø, M. H., Lehtimäki, J., Trivedi, Urvish, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2020, In: The ISME Journal. 14, 9, p. 2325-2335 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Effect of High-Dose vs Standard-Dose Vitamin D Supplementation in Pregnancy on Bone Mineralization in Offspring Until Age 6 Years: A Prespecified Secondary Analysis of a Double-Blinded, Randomized Clinical Trial

    Brustad, N., Garland, J., Thorsen, Jonathan Jan Ilve, Sevelsted, A., Krakauer, M., Vinding, R. K., Stokholm, Jakob, Bønnelykke, Klaus, Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2020, In: JAMA Pediatrics. 174, 5, p. 419-427 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Effect of fish oil supplementation in pregnancy on bone, lean, and fat mass at six years: randomised clinical trial

    Vinding, R. K., Stokholm, Jakob, Sevelsted, A., Sejersen, T., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Thorsen, Jonathan Jan Ilve, Howe, L. D., Krakauer, M. & Bisgaard, H., 2018, In: BMJ (Clinical research ed.). 362, p. 1-9 9 p., k3312.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age

    Morin, A., McKennan, C. G., Pedersen, C. T., Stokholm, Jakob, Chawes, Bo Lund Krogsgaard, Schoos, A. M., Naughton, K. A., Thorsen, Jonathan Jan Ilve, Mortensen, M. S., Vercelli, D., Trivedi, Urvish, Sørensen, Søren Johannes, Bisgaard, H., Nicolae, D. L., Bønnelykke, Klaus & Ober, C., 2020, In: Journal of Allergy and Clinical Immunology. 146, 6, p. 1358-1366

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Expanding known viral diversity in the healthy infant gut

    Shah, S. A., Deng, L., Thorsen, J., Pedersen, A. G., Dion, M. B., Castro-Mejía, J. L., Silins, R., Romme, F. O., Sausset, R., Jessen, L. E., Ndela, E. O., Hjelmsø, M., Rasmussen, M. A., Redgwell, T. A., Rodríguez, C. L., Vestergaard, G., Zhang, Y., Chawes, B., Bønnelykke, K., Sørensen, S. J. & 6 others, Bisgaard, H., Enault, F., Stokholm, Jakob, Moineau, S., Petit, M. A. & Nielsen, Dennis Sandris, 2023, In: Nature Microbiology. 8, p. 986–998

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Fish Oil-Derived Fatty Acids in Pregnancy and Wheeze and Asthma in Offspring

    Bisgaard, H., Stokholm, Jakob, Chawes, B. L., Vissing, N. H., Bjarnadóttir, E., Schoos, A. M., Wolsk, H. M., Pedersen, T. M., Vinding, R. K., Thorsteinsdóttir, S., Følsgaard, N. V., Fink, N. R., Thorsen, Jonathan Jan Ilve, Pedersen, A. G., Waage, J., Rasmussen, Morten Arendt, Stark, K. D., Olsen, Sjurdur F. & Bønnelykke, Klaus, 29 Dec 2016, In: New England Journal of Medicine. 375, 26, p. 2530-2539 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Fish oil supplementation in pregnancy and neurodevelopment in childhood - A randomized clinical trial

    Sass, L., Bjarnadóttir, Elín, Stokholm, Jakob, Chawes, Bo Lund Krogsgaard, Vinding, R. K., Mora-Jensen, A. C., Thorsen, Jonathan Jan Ilve, Nørgaard, S., Ebdrup, Bjørn, Jepsen, J. R. M., Fagerlund, Birgitte, Bønnelykke, Klaus, Lauritzen, Lotte & Bisgaard, H., 2021, In: Child Development. 92, 4, p. 1624-1635 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Fungi and bacteria in the beds of rural and urban infants correlate with later risk of atopic diseases

    Lehtimäki, J., Gupta, S., Hjelmsø, M., Shah, S., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Soverini, M., Li, Xuan Ji, Russel, J., Trivedi, Urvish, Brix, S., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Clinical and Experimental Allergy. 53, 12, p. 1268-1278 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Genetic, Clinical, and Environmental Factors Associated With Persistent Atopic Dermatitis in Childhood

    Thorsteinsdottir, S., Stokholm, Jakob, Thyssen, Jacob Pontoppidan, Nørgaard, S., Thorsen, Jonathan Jan Ilve, Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Waage, J. & Bisgaard, H., 2019, In: JAMA Dermatology. 155, 1, p. 50-57 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis

    Waage, J., Standl, M., Curtin, J. A., Jessen, L. E., Thorsen, J., Tian, C., Schoettler, N., 23andMe Research Team, AAGC collaborators, Flores, C., Abdellaoui, A., Ahluwalia, T. S., Alves, A. C., Amaral, A. F. S., Antó, J. M., Arnold, A., Barreto-Luis, A., Baurecht, H., van Beijsterveldt, C. E. M., Bleecker, E. R. & 33 others, Bonàs-Guarch, S., Boomsma, D. I., Brix, S., Bunyavanich, S., Burchard, E. G., Chen, Z., Curjuric, I., Custovic, A., den Dekker, H. T., Dharmage, S. C., Dmitrieva, J., Duijts, L., Ege, M. J., Gauderman, W. J., Georges, M., Gieger, C., Gilliland, F., Granell, R., Gui, H., Hansen, Torben, Heinrich, J., Henderson, J., Hernandez-Pacheco, N., Holt, P., Imboden, M., Jaddoe, V. W. V., Jarvelin, M., Jarvis, D. L., Jensen, K. K., Nohr, E. A., Bisgaard, H., Strachan, D. P. & Bønnelykke, Klaus, 2018, In: Nature Genetics. 50, 8, p. 1072-1080

    Research output: Contribution to journal › Letter › Research › peer-review

  22. Published

    High-dose vitamin D supplementation in pregnancy and 25(OH)D sufficiency in childhood reduce the risk of fractures and improve bone mineralization in childhood: Follow-up of a randomized clinical trial

    Brustad, N., Chawes, Bo Lund Krogsgaard, Thorsen, Jonathan Jan Ilve, Krakauer, M., Lasky-Su, J., Weiss, S. T., Stokholm, J., Bønnelykke, Klaus & Bisgaard, H., 2022, In: EClinicalMedicine. 43, 10 p., 101254.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Infant airway microbiota and topical immune perturbations in the origins of childhood asthma

    Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Waage, J., Mortensen, M., Brejnrod, A., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Stokholm, Jakob & Bisgaard, H., 2019, In: Nature Communications. 10, 8 p., 5001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Large-scale association analyses identify host factors influencing human gut microbiome composition

    Kurilshikov, A., Medina-Gomez, C., Bacigalupe, R., Radjabzadeh, D., Wang, J., Demirkan, A., Le Roy, C. I., Raygoza Garay, J. A., Finnicum, C. T., Liu, X., Zhernakova, D. V., Bonder, M. J., Hansen, T. H., Frost, F., Rühlemann, M. C., Turpin, W., Moon, J. Y., Kim, H. N., Lüll, K., Barkan, E. & 84 others, Shah, S. A., Fornage, M., Szopinska-Tokov, J., Wallen, Z. D., Borisevich, D., Agreus, L., Andreasson, A., Bang, C., Bedrani, L., Bell, J. T., Bisgaard, H., Boehnke, M., Boomsma, D. I., Burk, R. D., Claringbould, A., Croitoru, K., Davies, G. E., van Duijn, C. M., Duijts, L., Falony, G., Fu, J., van der Graaf, A., Hansen, Torben, Homuth, G., Hughes, D. A., Ijzerman, R. G., Jackson, M. A., Jaddoe, V. W. V., Joossens, M., Jørgensen, T., Keszthelyi, D., Knight, R., Laakso, M., Laudes, M., Launer, L. J., Lieb, W., Lusis, A. J., Masclee, A. A. M., Moll, H. A., Mujagic, Z., Qibin, Q., Rothschild, D., Shin, H., Sørensen, Søren Johannes, Steves, C. J., Thorsen, Jonathan Jan Ilve, Timpson, N. J., Tito, R. Y., Vieira-Silva, S., Völker, U., Völzke, H., Võsa, U., Wade, K. H., Walter, S., Watanabe, K., Weiss, S., Weiss, F. U., Weissbrod, O., Westra, H. J., Willemsen, G., Payami, H., Jonkers, D. M. A. E., Arias Vasquez, A., de Geus, E. J. C., Meyer, K. A., Stokholm, Jakob, Segal, E., Org, E., Wijmenga, C., Kim, H. L., Kaplan, R. C., Spector, T. D., Uitterlinden, A. G., Rivadeneira, F., Franke, A., Lerch, M. M., Franke, L., Sanna, S., D’Amato, M., Pedersen, Oluf Borbye, Paterson, A. D., Kraaij, R., Raes, J. & Zhernakova, A., 2021, In: Nature Genetics. 53, p. 156-165 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies

    Thorsen, Jonathan Jan Ilve, Brejnrod, A. D., Mortensen, M. S., Rasmussen, Morten Arendt, Stokholm, Jakob, Abu Al-Soud, W., Sørensen, Søren Johannes, Bisgaard, H. & Waage, J. E., 2016, In: Microbiome. 4, 14 p., 62.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 215672837