James Seymour Haile

James Seymour Haile

Research consultant


Publication year:
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1 - 25 out of 44Page size: 25
  1. 2024
  2. Published

    Millennial-scale variations in Arctic sea ice are recorded in sedimentary ancient DNA of the microalga Polarella glacialis

    Harðardóttir, S., Haile, James Seymour, Ray, J. L., Limoges, A., Van Nieuwenhove, N., Lalande, C., Grondin, P., Jackson, Rebecca, Skaar, K. S., Heikkilä, M., Berge, J., Lundholm, Nina, Massé, G., Rysgaard, S., Seidenkrantz, M., De Schepper, S., Lorenzen, Eline, Lovejoy, C. & dos Santos Ribeiro, Sofia Isabel, 2024, In: Communications Earth and Environment. 5, 13 p., 25.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 2023
  4. Published

    The impact of SWI/SNF and NuRD inactivation on gene expression is tightly coupled with levels of RNA polymerase II occupancy at promoters

    Pundhir, Sachin, Su, Jinyu, Tapia, Marta Cecylia, Hansen, A. M., Haile, James Seymour, Hansen, K. & Porse, Bo Torben, 2023, In: Genome Research. 33, 3, p. 332-345 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. 2022
  6. Published

    Grey wolf genomic history reveals a dual ancestry of dogs

    Bergström, A., Stanton, D. W. G., Taron, U. H., Frantz, L., Sinding, M. H. S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D. M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M. V., Ramos-Madrigal, J., Feuerborn, T. R., Reiter, E., Gretzinger, J., Münzel, S. C. & 61 others, Swali, P., Conard, N. J., Carøe, C., Haile, James Seymour, Linderholm, A., Androsov, S., Barnes, I., Baumann, C., Benecke, N., Bocherens, H., Brace, S., Carden, R. F., Drucker, D. G., Fedorov, S., Gasparik, M., Germonpré, M., Grigoriev, S., Groves, P., Hertwig, S. T., Ivanova, V. V., Janssens, L., Jennings, R. P., Kasparov, A. K., Kirillova, I. V., Kurmaniyazov, I., Kuzmin, Y. V., Kosintsev, P. A., Lázničková-Galetová, M., Leduc, C., Nikolskiy, P., Nussbaumer, M., O’Drisceoil, C., Orlando, L., Outram, A., Pavlova, E. Y., Perri, A. R., Pilot, M., Pitulko, V. V., Plotnikov, V. V., Protopopov, A. V., Rehazek, A., Sablin, M., Seguin-Orlando, A., Storå, J., Verjux, C., Zaibert, V. F., Zazula, G., Crombé, P., Hansen, Anders Johannes, Willerslev, Eske, Leonard, J. A., Götherström, A., Pinhasi, R., Schuenemann, V. J., Hofreiter, M., Gilbert, M Thomas P, Shapiro, B., Larson, G., Krause, J., Dalén, L. & Skoglund, P., 2022, In: Nature. 607, 7918, p. 313-320

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Reply to: When did mammoths go extinct?

    Wang, Y., Prohaska, A., Dong, H., Alberti, A., Alsos, I. G., Beilman, D. W., Bjørk, A. A., Cao, J., Cherezova, A. A., Coissac, E., De Sanctis, B., Denoeud, F., Dockter, C., Durbin, R., Edwards, M. E., Edwards, N. R., Esdale, J., Fedorov, G. B., Fernandez-Guerra, A., Froese, D. G. & 32 others, Gusarova, G., Haile, James Seymour, Holden, P. B., Kjeldsen, Kristian Kjellerup, Kjær, Kurt H., Korneliussen, Thorfinn Sand, Lammers, Y., Larsen, Nicolaj Krog, Macleod, R., Mangerud, J., McColl, Hugh, Merkel, M. K. F., Money, D., Möller, P., Nogues, David Bravo, Orlando, L., Owens, Hannah Lois, Pedersen, Mikkel Winther, Racimo, Fernando, Rahbek, Carsten, Rasic, J. T., Rouillard, Alexandra, Ruter, Anthony Henry, Skadhauge, B., Svendsen, J. I., Tikhonov, A., Vinner, Lasse, Wincker, P., Xing, Y., Zhang, Y., Meltzer, D. J. & Willerslev, Eske, 2022, In: Nature. 612, 7938, p. E4-E6

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  8. 2021
  9. Published

    Circumpolar phylogeography and demographic history of beluga whales reflect past climatic fluctuations

    Skovrind, M., Louis, M., Westbury, M. V., Garilao, C., Kaschner, K., Castruita, J. A. S., Gopalakrishnan, S., Knudsen, S. W., Haile, J. S., Dalén, L., Meshchersky, I. G., Shpak, O. V., Glazov, D. M., Rozhnov, V. V., Litovka, D. I., Krasnova, V. V., Chernetsky, A. D., Bel'kovich, V. M., Lydersen, C., Kovacs, K. M. & 4 others, Heide-Jørgensen, M. P., Postma, L., Ferguson, S. H. & Lorenzen, Eline, Jun 2021, In: Molecular Ecology. 30, 11, p. 2543-2559 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Dire wolves were the last of an ancient New World canid lineage

    Perri, A. R., Mitchell, K. J., Mouton, A., Alvarez-Carretero, S., Hulme-Beaman, A., Haile, J., Jamieson, A., Meachen, J., Lin, A. T., Schubert, B. W., Ameen, C., Antipina, E. E., Bover, P., Brace, S., Carmagnini, A., Carøe, C., Samaniego Castruita, J. A., Chatters, J. C., Dobney, K., dos Reis, M. & 29 others, Evin, A., Gaubert, P., Gopalakrishnan, Shyam, Gower, Graham, Heiniger, H., Helgen, K. M., Kapp, J., Kosintsev, P. A., Linderholm, A., Ozga, A. T., Presslee, S., Salis, A. T., Saremi, N. F., Shew, C., Skerry, K., Taranenko, D. E., Thompson, M., Sablin, M. V., Kuzmin, Y. V., Collins, Matthew James, Sinding, M. S., Gilbert, M Thomas P, Stone, A. C., Shapiro, B., Van Valkenburgh, B., Wayne, R. K., Larson, G., Cooper, A. & Frantz, L. A. F., 2021, In: Nature. 591, p. 87-91

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Late Quaternary dynamics of Arctic biota from ancient environmental genomics: [+ Correction]

    Wang, Y., Pedersen, M. W., Alsos, I. G., De Sanctis, B., Racimo, F., Prohaska, A., Coissac, E., Owens, H. L., Merkel, M. K. F., Fernandez-Guerra, A., Rouillard, A., Lammers, Y., Alberti, A., Denoeud, F., Money, D., Ruter, A. H., McColl, H., Larsen, N. K., Cherezova, A. A., Edwards, M. E. & 30 others, Fedorov, G. B., Haile, James Seymour, Orlando, L., Vinner, Lasse, Korneliussen, Thorfinn Sand, Beilman, D. W., Bjørk, Anders Anker, Cao, Jialu, Dockter, C., Esdale, J., Gusarova, G., Kjeldsen, Kristian Kjellerup, Mangerud, J., Rasic, J. T., Skadhauge, B., Svendsen, J. I., Tikhonov, A., Wincker, P., Xing, Y., Zhang, Y., Froese, D. G., Rahbek, Carsten, Nogues, David Bravo, Holden, P. B., Edwards, N. R., Durbin, R., Meltzer, D. J., Kjær, Kurt H., Möller, P. & Willerslev, Eske, 2021, In: Nature. 600, 7887, p. 86–92 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Unraveling elephant-shrews: Phylogenetic relationships and unexpected introgression among giant sengis

    Lawson, L. P., Castruita, J. A. S., Haile, James Seymour, Vernesi, C., Rovero, F. & Lorenzen, Eline, 2021, In: Molecular Phylogenetics and Evolution. 154, 7 p., 107001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. 2020
  14. Published

    Influence of past climate change on phylogeography and demographic history of narwhals, Monodon monoceros

    Louis, Marie Georgette Yolande J, Skovrind, Mikkel, Samaniego Castruita, J. A., Garilao, C., Kaschner, K., Gopalakrishnan, Shyam, Haile, James Seymour, Lydersen, C., Kovacs, K. M., Garde, E., Heide-Jørgensen, M. P., Postma, L., Ferguson, S. H., Willerslev, Eske & Lorenzen, Eline, 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1925, 9 p., 20192964.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Origins and genetic legacy of prehistoric dogs

    Bergström, A., Frantz, L., Schmidt, R., Ersmark, E., Lebrasseur, O., Girdland-flink, L., Lin, A. T., Storå, J., Sjögren, K., Anthony, D., Antipina, E., Amiri, S., Bar-oz, G., Bazaliiskii, V. I., Bulatović, J., Brown, D., Carmagnini, A., Davy, T., Fedorov, S., Fiore, I. & 36 others, Fulton, D., Germonpré, M., Haile, James Seymour, Irving-Pease, Evan, Jamieson, A., Janssens, L., Kirillova, I., Horwitz, L. K., Kuzmanovic-cvetković, J., Kuzmin, Y., Losey, R. J., Dizdar, D. L., Mashkour, M., Novak, M., Onar, V., Orton, D., Pasarić, M., Radivojević, M., Rajković, D., Roberts, B., Ryan, H., Sablin, M., Shidlovskiy, F., Stojanović, I., Tagliacozzo, A., Trantalidou, K., Ullén, I., Villaluenga, A., Wapnish, P., Dobney, K., Götherström, A., Linderholm, A., Dalén, L., Pinhasi, R., Larson, G. & Skoglund, P., 2020, In: Science. 370, 6516, p. 557-564

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. 2019
  17. Published

    Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

    Frantz, L. A. F., Haile, J., Lin, A. T., Scheu, A., Geoerg, C., Benecke, N., Alexander, M., Linderholm, A., Mullin, V. E., Daly, K. G., Battista, V. M., Price, M., Gron, K. J., Alexandri, P., Arbogast, R-M., Arbuckle, B., Balasescu, A., Barnett, R., Bartosiewicz, L., Baryshnikov, G. & 80 others, Bonsall, C., Boric, D., Boroneant, A., Bulatovic, J., Cakirlar, C., Carretero, J., Chapman, J., Church, M., Crooijmans, R., De Cupere, B., Detry, C., Dimitrijevic, V., Dumitrascu, V., du Plessis, L., Edwards, C. J., Erek, C. M., Erim-Ozdogan, A., Ervynck, A., Fulgione, D., Gligor, M., Gotherstrom, A., Gourichon, L., Groenen, M. A. M., Helmer, D., Hongo, H., Horwitz, L. K., Irving-Pease, E. K., Lebrasseur, O., Lesur, J., Malone, C., Manaseryan, N., Marciniak, A., Martlew, H., Mashkour, M., Matthews, R., Matuzeviciute, G. M., Maziar, S., Meijaard, E., McGovern, T., Megens, H., Miller, R., Mohaseb, A. F., Orschiedt, J., Orton, D., Papathanasiou, A., Pearson, M. P., Pinhasi, R., Radmanovic, D., Ricaut, F., Richards, M., Sabin, R., Sarti, L., Schier, W., Sheikhi, S., Stephan, E., Stewart, J. R., Stoddart, S., Tagliacozzo, A., Tasic, N., Trantalidou, K., Tresset, A., Valdiosera, C., van den Hurk, Y., Van Poucke, S., Vigne, J., Yanevich, A., Zeeb-Lanz, A., Triantafyllidis, A., Gilbert, M Thomas P, Schibler, J., Rowley-Conwy, P., Zeder, M., Peters, J., Cucchi, T., Bradley, D. G., Dobney, K., Burger, J., Evin, A., Girdland-Flink, L. & Larson, G., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 35, p. 17231-17238

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Demographic reconstruction from ancient DNA supports rapid extinction of the great auk

    Thomas, J. E., Carvalho, G. R., Haile, J., Rawlence, N. J., Martin, M. D., Ho, S. Y. W., Sigfusson, A. P., Josefsson, V. A., Frederiksen, M., Linnebjerg, J. F., Castruita, J. A. S., Niemann, J., Sinding, M-H. S., Sandoval-Velasco, M., Soares, A. E. R., Lacy, R., Barilaro, C., Best, J., Brandis, D., Cavallo, C. & 17 others, Elorza, M., Garrett, K. L., Groot, M., Johansson, F., Lifjeld, J. T., Nilson, G., Serjeanston, D., Sweet, P., Fuller, E., Hufthammer, A. K., Meldgaard, Morten, Fjeldså, Jon, Shapiro, B., Hofreiter, M., Stewart, J. R., Gilbert, M Thomas P & Knapp, M., 2019, In: eLife. 8, 35 p., e47509.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Hybridization between two high Arctic cetaceans confirmed by genomic analysis

    Skovrind, Mikkel, Castruita, J. A. S., Haile, James Seymour, Treadaway, E. C., Gopalakrishnan, Shyam, Westbury, M. V., Heide-Jorgensen, M. P., Szpak, P. & Lorenzen, Eline, 2019, In: Scientific Reports. 9, 10 p., 7729.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Mitogenomic evidence of close relationships between New Zealand's extinct giant raptors and small-sized Australian sister-taxa

    Knapp, M., Thomas, J. E., Haile, James Seymour, Prost, S., Ho, S. Y. W., Dussex, N., Cameron-Christie, S., Kardailsky, O., Barnett, R., Bunce, M., Gilbert, M Thomas P & Scofield, R. P., 2019, In: Molecular Phylogenetics and Evolution. 134, p. 122-128

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. 2018
  22. Published

    Metabarcoding of modern soil DNA gives a highly local vegetation signal in Svalbard tundra

    Edwards, M. E., Alsos, I. G., Yoccoz, N., Coissac, E., Goslar, T., Gielly, L., Haile, James Seymour, Langdon, C. T., Tribsch, A., Binney, H. A., Von Stedingk, H. & Taberlet, P., 1 Dec 2018, In: The Holocene. 28, 12, p. 2006-2016

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Giant deer (Megaloceros giganteus) diet from Mid-Weichselian deposits under the present North Sea inferred from molar-embedded botanical remains: GIANT DEER DIET FROM MID-WEICHSELIAN DEPOSITS

    Van Geel, B., Sevink, J., Mol, D., Langeveld, B. W., Van Der Ham, R. W. J. M., Van Der Kraan, C. J. M., Van Der Plicht, J., Haile, James Seymour, Rey de la Iglesia, Alba & Lorenzen, Eline, 1 Nov 2018, In: Journal of Quaternary Science. 33, 8, p. 924-933

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events

    Frantz, L. A. F., Rudzinski, A., Nugraha, A. M. S., Evin, A., Burton, J., Hulme-Beaman, A., Linderholm, A., Barnett, R., Vega, R., Irving-Pease, E. K., Haile, J. S., Allen, R., Leus, K., Shephard, J., Hillyer, M., Gillemot, S., van den Hurk, J., Ogle, S., Atofanei, C., Thomas, M. G. & 22 others, Johansson, F., Mustari, A. H., Williams, J., Mohamad, K., Damayanti, C. S., Wiryadi, I. D., Obbles, D., Mona, S., Day, H., Yasin, M., Meker, S., McGuire, J. A., Evans, B. J., von Rintelen, T., Ho, S. Y. W., Searle, J. B., Kitchener, A. C., Macdonald, A. A., Shaw, D. J., Hall, R., Galbusera, P. & Larson, G., 2018, In: Proceedings of the Royal Society B: Biological Sciences. 285, 1876, 8 p., 20172566.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    The evolutionary history of dogs in the Americas

    Leathlobhair, M. N., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., Lebrasseur, O., Ameen, C., Blick, J., Boyko, A. R., Brace, S., Cortes, Y. N., Crockford, S. J., Devault, A., Dimopoulos, E. A., Eldridge, M., Enk, J., Gopalakrishnan, S., Gori, K., Grimes, V. & 30 others, Guiry, E., Hansen, Anders Johannes, Hulme-Beaman, A., Johnson, J., Kitchen, A., Kasparov, A. K., Kwon, Y., Nikolskiy, P. A., Lope, C. P., Manin, A., Martin, T., Meyer, M., Myers, K. N., Omura, M., Rouillard, J., Pavlova, E. Y., Sciulli, P., Sinding, M. S., Strakova, A., Ivanova, V. V., Widga, C., Willerslev, Eske, Pitulko, V. V., Barnes, I., Gilbert, M Thomas P, Dobney, K. M., Malhi, R. S., Murchison, E. P., Larson, G. & Frantz, L. A. F., 2018, In: Science. 361, 6397, p. 81-85 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. 2017
  27. Published

    An ‛aukward’ tale: a genetic approach to discover the whereabouts of the last Great Auks

    Thomas, J. E., Carvalho, G. R., Haile, James Seymour, Martin, M. D., Samaniego Castruita, J. A., Niemann, Jonas, Sinding, Mikkel Holger Strander, Sandoval-Velasco, Marcela, Rawlence, N. J., Fuller, E., Fjeldså, Jon, Hofreiter, M., Stewart, J. R., Gilbert, M Thomas P & Knapp, M., 15 Jun 2017, In: Genes. 8, 6, 12 p., 164.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes

    Sanchez Barreiro, F., Vieira, Filipe Garrett, Martin, M. D., Haile, James Seymour, Gilbert, M Thomas P & Wales, N., 2017, In: Molecular Ecology Resources. 17, 2, p. 209-220 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. 2016
  30. Published

    Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation

    Soares, A. E. R., Novak, B. J., Haile, James Seymour, Heupink, T. H., Fjeldså, Jon, Gilbert, M Thomas P, Poinar, H., Church, G. M. & Shapiro, B., 2016, In: BMC Evolutionary Biology. 16, 9 p., 230.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. 2015
  32. Published

    Ancient and modern environmental DNA

    Pedersen, Mikkel Winther, Overballe-Petersen, S., Ermini, L., Der Sarkissian, C., Haile, James Seymour, Hellström, A. M., Spens, J., Thomsen, P. F., Bohmann, Kristine, Cappellini, Enrico, Schnell, I. B., Wales, N., Carøe, C., Campos, P., Schmidt, A. M. Z., Gilbert, M Thomas P, Hansen, Anders Johannes, Orlando, L. A. A. & Willerslev, Eske, 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 11 p., 20130383.

    Research output: Contribution to journal › Review › Research › peer-review

  33. Published

    Lake sediment multi-taxon DNA from North Greenland records early post-glacial appearance of vascular plants and accurately tracks environmental changes

    Epp, L. S., Gussarova, G., Boessenkool, S., Olsen, J., Haile, James Seymour, Schrøder-Nielsen, A., Ludikova, A., Hassel, K., Stenøien, H. K., Funder, Svend Visby, Willerslev, Eske, Kjær, Kurt H. & Brochmann, C., 2015, In: Quaternary Science Reviews. 117, p. 152-163 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Palaeoenvironmental interpretation of yedoma silt (ice complex) deposition as cold-climate loess, Duvanny Yar, Northeast Siberia

    Murton, J. B., Goslar, T., Edwards, M. E., Bateman, M. D., Danilov, P. P., Savvinov, G. N., Gubin, S. V., Ghaleb, B., Haile, James Seymour, Kanevskiy, M., Lozhkin, A. V., Lupachev, A. V., Murton, D. K., Shur, Y., Tikhonov, A., Vasil'chuk, A. C., Vasil'chuk, Y. K. & Wolfe, S. A., 2015, In: Permafrost and Periglacial Processes. 26, 3, p. 208-288 81 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. 2014
  36. Published

    Fifty thousand years of Arctic vegetation and megafaunal diet

    Willerslev, E., Davison, J., Moora, M., Zobel, M., Coissac, E., Edwards, M. E., Lorenzen, E., Vestergård, M., Gussarova, G., Haile, J. S., Craine, J., Gielly, L., Boessenkool, S., Epp, L. S., Pearman, P. B., Cheddadi, R., Murray, D., Bråthen, K. A., Yoccoz, N., Binney, H. & 30 others, Cruaud, C., Wincker, P., Goslar, T., Alsos, I. G., Bellemain, E., Brysting, A. K., Elven, R., Sønstebø, J. H., Murton, J., Sher, A., Rasmussen, M., Rønn, Regin, Mourier, T., Cooper, A., Austin, J., Möller, P., Froese, D., Zazula, G., Pompanon, F., Rioux, D., Niderkorn, V., Tikhonov, A., Savvinov, G., Roberts, R. G., MacPhee, R. D. E., Gilbert, M Thomas P, Kjær, Kurt H., Orlando, L. A. A., Brochmann, C. & Taberlet, P., 2014, In: Nature. 506, 7486, p. 47-51 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 173691547