thw266 KU

thw266 KU

Professor, Affiliate Professor

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    ORCID: 0000-0001-6860-1521

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    1. Published

      Why sequence all eukaryotes?

      Blaxter, M., Archibald, J. M., Childers, A. K., Coddington, J. A., Crandall, K. A., Di Palma, F., Durbin, R., Edwards, S. V., Graves, J. A. M., Hackett, K. J., Hall, N., Jarvis, E. D., Johnson, R. N., Karlsson, E. K., Kress, W. J., Kuraku, S., Lawniczak, M. K. N., Lindblad-Toh, K., Lopez, J. V., Moran, N. A. & 7 others, Robinson, G. E., Ryder, O. A., Shapiro, B., Soltis, P. S., Warnow, T., KU, thw266 & Lewin, H. A., 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 4, 9 p., e2115636118.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes

      Sun, Y-B., Xiong, Z-J., Xiang, X-Y., Liu, S-P., Zhou, W-W., Tu, X-L., Zhong, L., Wang, L., Wu, D-D., Zhang, B-L., Zhu, C-L., Yang, M-M., Chen, H-M., Li, F., Zhou, L., Feng, S-H., Huang, C., Zhang, G., Irwin, D., Hillis, D. M. & 5 others, Murphy, R. W., Yang, H., Che, J., Wang, J. & Zhang, Y., 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 11, p. E1257-E1262 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Whole-genome sequence of Schistosoma haematobium

      Young, N. D., Jex, A. R., Li, B., Liu, S., Yang, L., Xiong, Z., Li, Y., Cantacessi, C., Hall, R. S., Xu, X., Chen, F., Wu, X., Zerlotini, A., Oliveira, G., Hofmann, A., Zhang, G., Fang, X., Kang, Y., Campbell, B. E., Loukas, A. & 8 others, Ranganathan, S., Rollinson, D., Rinaldi, G., Brindley, P. J., Yang, H., Wang, J., Wang, J. & Gasser, R. B., 2012, In: Nature Genetics. 44, 2, p. 221-225 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Whole-genome analyses resolve early branches in the tree of life of modern birds

      Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G. & 85 others, Boussau, B., Bayzid, M. S., Zavidovych, V., Subramanian, S., Gabaldón, T., Capella-Gutiérrez, S., Huerta-Cepas, J., Rekepalli, B., Terkelsen, K. M., Schierup, M. H., Lindow, Bent Erik Kramer, Warren, W. C., Ray, D., Green, R. E., Bruford, M. W., Zhan, X., Dixon, A., Li, S., Li, N., Huang, Y., Derryberry, E. P., Bertelsen, Mads Frost, Sheldon, F. H., Brumfield, R. T., Mello, C. V., Lovell, P. V., Wirthlin, M., Schneider, M. P. C., Prosdocimi, F., Samaniego Castruita, J. A., Velazquez, A. M. V., Alfaro Nuñez, L. A., Campos, P., Petersen, Bent, Sicheritz-Ponten, T., Pas, A., Bailey, T., Scofield, P., Bunce, M., Lambert, D. M., Zhou, Q., Perelman, P., Driskell, A. C., Shapiro, B., Xiong, Z., Zeng, Y., Liu, S., Li, Z., Liu, B., Wu, K., Xiao, J., Yinqi, X., Zheng, Q., Zhang, Y., Yang, H., Wang, J., Smeds, L., Rheindt, F. E., Braun, M., Fjeldså, Jon, Orlando, L. A. A., Barker, F. K., Jønsson, Knud Andreas, Johnson, W., Koepfli, K. P., O'Brien, S., Haussler, D., Ryder, O. A., Rahbek, Carsten, Willerslev, Eske, Graves, G. R., Glenn, T. C., McCormack, J., Burt, D., Ellegren, H., Alström, P., Edwards, S. V., Stamatakis, A., Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Wang, J., Gilbert, M Thomas P & KU, thw266, 2014, In: Science. 346, 6215, p. 1320-1331 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Whole genome identification, phylogeny and evolution of the cytochrome P450 family 2 (CYP2) sub-families in birds

      Almeida, D., Maldonado, E., Khan, I., Silva, L., Gilbert, M Thomas P, KU, thw266, Jarvis, E. D., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2016, In: Genome Biology and Evolution. 8, 4, p. 1115-1131 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Variation in predicted COVID-19 risk among lemurs and lorises

      Melin, A. D., Orkin, J. D., Janiak, M. C., Valenzuela, A., Kuderna, L., Marrone, F., Ramangason, H., Horvath, J. E., Roos, C., Kitchener, A. C., Khor, C. C., Lim, W. K., Lee, J. G. H., Tan, P., Umapathy, G., Raveendran, M., Alan Harris, R., Gut, I., Gut, M., Lizano, E. & 19 others, Nadler, T., Zinner, D., Le, M. D., Manu, S., Rabarivola, C. J., Zaramody, A., Andriaholinirina, N., Johnson, S. E., Jarvis, E. D., Fedrigo, O., Wu, D., KU, thw266, Farh, K. K., Rogers, J., Marques-Bonet, T., Navarro, A., Juan, D., Arora, P. S. & Higham, J. P., 2021, In: American Journal of Primatology. 83, 6, 12 p., e23255.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Validation of Potential Reference Genes for Real-Time qPCR Analysis in Pharaoh Ant, Monomorium pharaonis (Hymenoptera: Formicidae)

      Ding, G., Gao, Q., Chen, J., Zhao, J., KU, thw266 & Liu, W., 2022, In: Frontiers in Physiology. 13, 9 p., 852357.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Unparalleled details of soft tissues in a Cretaceous ant

      Zhuang, Y., Xu, W., KU, thw266, Mai, H., Li, X., He, H., Ran, H. & Liu, Y., 2022, In: BMC Ecology and Evolution. 22, 1, 10 p., 146.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

      Li, C., Zhang, Y., Li, J., Kong, L., Hu, H., Pan, H., Xu, L., Deng, Y., Li, Q., Jin, L., Yu, H., Chen, Y., Liu, B., Yang, L., Liu, S., Zhang, Y., Lang, Y., Xia, J., He, W., Shi, Q. & 21 others, Subramanian, S., Millar, C. D., Meader, S., Rands, C. M., Fujita, M. K., Greenwold, M. J., Castoe, T. A., Pollock, D. D., Gu, W., Nam, K., Ellegren, H., Ho, S. Y., Burt, D. W., Ponting, C. P., Jarvis, E. D., Gilbert, M Thomas P, Yang, H., Wang, J., Lambert, D. M., Wang, J. & KU, thw266, 2014, In: GigaScience. 3, 27, 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Triangulation of the human, chimpanzee, and Neanderthal genome sequences identifies potentially compensated mutations

      KU, thw266, Pei, Z., Krawczak, M., Ball, E. V., Mort, M., Kehrer-Sawatzki, H. & Cooper, D. N., 2010, In: Human Mutation. 31, 12, p. 1286-93 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Transcriptome innovations in primates revealed by single-molecule long-read sequencing

      Ferrández-Peral, L., Zhan, X., Alvarez-Estape, M., Chiva, C., Esteller-Cucala, P., García-Pérez, R., Julià, E., Lizano, E., Fornas, Ò., Sabidó, E., Li, Q., Marquès-Bonet, T., Juan, D. & KU, thw266, 2022, In: Genome Research. 32, 8, p. 1448-1462 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes

      Bi, X., Wang, K., Yang, L., Pan, H., Jiang, H., Wei, Q., Fang, M., Yu, H., Zhu, C., Cai, Y., He, Y., Gan, X., Zeng, H., Yu, D., Zhu, Y., Jiang, H., Qiu, Q., Yang, H., Zhang, Y. E., Wang, W. & 3 others, Zhu, M., He, S. & KU, thw266, 2021, In: Cell. 184, 5, p. 1377-1391, e1-e14

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Towards reconstructing the ancestral brain gene-network regulating caste differentiation in ants

      Qiu, Bitao, Larsen, Rasmus Stenbak, Chang, N., Wang, J., Boomsma, Jacobus J. & KU, thw266, 2018, In: Nature Ecology & Evolution. 2, 11, p. 1782-1791

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Towards complete and error-free genome assemblies of all vertebrate species

      Rhie, A., McCarthy, S. A., Fedrigo, O., Damas, J., Formenti, G., Koren, S., Uliano-Silva, M., Chow, W., Fungtammasan, A., Kim, J., Lee, C., Ko, B. J., Chaisson, M., Gedman, G. L., Cantin, L. J., Thibaud-Nissen, F., Haggerty, L., Bista, I., Smith, M., Haase, B. & 107 others, Mountcastle, J., Winkler, S., Paez, S., Howard, J., Vernes, S. C., Lama, T. M., Grutzner, F., Warren, W. C., Balakrishnan, C. N., Burt, D., George, J. M., Biegler, M. T., Iorns, D., Digby, A., Eason, D., Robertson, B., Edwards, T., Wilkinson, M., Turner, G., Meyer, A., Kautt, A. F., Franchini, P., Detrich, H. W., Svardal, H., Wagner, M., Naylor, G. J. P., Pippel, M., Malinsky, M., Mooney, M., Simbirsky, M., Hannigan, B. T., Pesout, T., Houck, M., Misuraca, A., Kingan, S. B., Hall, R., Kronenberg, Z., Sović, I., Dunn, C., Ning, Z., Hastie, A., Lee, J., Selvaraj, S., Green, R. E., Putnam, N. H., Gut, I., Ghurye, J., Garrison, E., Sims, Y., Collins, J., Pelan, S., Torrance, J., Tracey, A., Wood, J., Dagnew, R. E., Guan, D., London, S. E., Clayton, D. F., Mello, C. V., Friedrich, S. R., Lovell, P. V., Osipova, E., Al-Ajli, F. O., Secomandi, S., Kim, H., Theofanopoulou, C., Hiller, M., Zhou, Y., Harris, R. S., Makova, K. D., Medvedev, P., Hoffman, J., Masterson, P., Clark, K., Martin, F., Howe, K., Flicek, P., Walenz, B. P., Kwak, W., Clawson, H., Diekhans, M., Nassar, L., Paten, B., Kraus, R. H. S., Crawford, A. J., Gilbert, M Thomas P, KU, thw266, Venkatesh, B., Murphy, R. W., Koepfli, K., Shapiro, B., Johnson, W. E., Di Palma, F., Marques-Bonet, T., Teeling, E. C., Warnow, T., Graves, J. M., Ryder, O. A., Haussler, D., O’Brien, S. J., Korlach, J., Lewin, H. A., Howe, K., Myers, E. W., Durbin, R., Phillippy, A. M. & Jarvis, E. D., 2021, In: Nature. 592, 7856, p. 737-746 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

      Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., Vandewege, M. W., John, J. A. S., Capella-Gutierrez, S., Castoe, T. A., Kern, C., Fujita, M. K., Opazo, J. C., Jurka, J., Kojima, K. K., Caballero, J., Hubley, R. M., Smit, A. F., Platt, R. N., Lavoie, C. A. & 35 others, Ramakodi, M. P., Finger Jr., J. W., Suh, A., Isberg, S. R., Miles, L., Chong, A. Y., Jaratlerdsiri, W., Gongora, J., Moran, C., Iriarte, A., McCormack, J., Burgess, S. C., Edwards, S. V., Lyons, E., Williams, C., Breen, M., Howard, J. T., Gresham, C. R., Peterson, D. G., Schmitz, J., Pollock, D. D., Haussler, D., Triplett, E. W., KU, thw266, Irie, N., Jarvis, E. D., Brochu, C. A., Schmidt, C. J., McCarthy, F. M., Faircloth, B. C., Hoffmann, F. G., Glenn, T. C., Gabaldon, T., Paten, B. & Ray, D. A., 2014, In: Science. 346, 6215, 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. The yak genome and adaptation to life at high altitude

      Qiu, Q., Zhang, G., Ma, T., Qian, W., Wang, J., Ye, Z., Cao, C., Hu, Q., Kim, J., Larkin, D. M., Auvil, L., Capitanu, B., Ma, J., Lewin, H. A., Qian, X., Lang, Y., Zhou, R., Wang, L., Wang, K., Xia, J. & 29 others, Liao, S., Pan, S., Lu, X., Hou, H., Wang, Y., Zang, X., Yin, Y., Ma, H., Zhang, J., Wang, Z., Zhang, Y., Zhang, D., Yonezawa, T., Hasegawa, M., Zhong, Y., Liu, W., Zhang, Y., Huang, Z., Zhang, S., Long, R., Yang, H., Wang, J., Lenstra, J. A., Cooper, D. N., Wu, Y., Wang, J., Shi, P., Wang, J. & Liu, J., 2012, In: Nature Genetics. 44, 8, p. 946-951 6 p.

      Research output: Contribution to journal › Letter › Research › peer-review

    17. Published

      The origin of domestication genes in goats

      Zheng, Z., Wang, X., Li, M., Li, Y., Yang, Z., Wang, X., Pan, X., Gong, M., Zhang, Y., Guo, Y., Wang, Y., Liu, J., Cai, Y., Chen, Q., Okpeku, M., Colli, L., Cai, D., Wang, K., Huang, S., Sonstegard, T. S. & 16 others, Esmailizadeh, A., Zhang, W., Zhang, T., Xu, Y., Xu, N., Yang, Y., Han, J., Chen, L., Lesur, J., Daly, K. G., Bradley, D. G., Heller, Rasmus, KU, thw266, Wang, W., Chen, Y. & Jiang, Y., 2020, In: Science Advances. 6, 21, eaaz5216.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. The locust genome provides insight into swarm formation and long-distance flight

      Wang, X., Fang, X., Yang, P., Jiang, X., Jiang, F., Zhao, D., Li, B., Cui, F., Wei, J., Ma, C., Wang, Y., He, J., Luo, Y., Wang, Z., Guo, X., Guo, W., Wang, X., Zhang, Y., Yang, M., Hao, S. & 25 others, Chen, B., Ma, Z., Yu, D., Xiong, Z., Zhu, Y., Fan, D., Han, L., Wang, B., Chen, Y., Wang, J., Yang, L., Zhao, W., Feng, Y., Chen, G., Lian, J., Li, Q., Huang, Z., Yao, X., Lv, N., KU, thw266, Li, Y., Wang, J., Wang, J., Zhu, B. & Kang, L., 2014, In: Nature Communications. 5, 9 p., 2957.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      The landscape of tolerated genetic variation in humans and primates

      Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R., Balick, D. & 77 others, Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., do Amaral, J. V., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., KU, thw266, Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Bataillon, T., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A., Guschanski, K., Schierup, M. H., Beck, R. M. D., Umapathy, G., Roos, C., Boubli, J. P., Lek, M., Sunyaev, S., O'Donnell-Luria, A., Rehm, H. L., Xu, J., Rogers, J., Marques-Bonet, T. & Farh, K. K. H., 2023, In: Science (New York, N.Y.). 380, 6648, 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment

      Evans, J. D., Brown, S. J., Hackett, K. J., Robinson, G., Richards, S., Lawson, D., Elsik, C., Coddington, J., Edwards, O., Emrich, S., Gabaldon, T., Goldsmith, M., Hanes, G., Misof, B., Muñoz-Torres, M., Niehuis, O., Papanicolaou, A., Pfrender, M., Poelchau, M., Purcell-Miramontes, M. & 7 others, Robertson, H. M., Ryder, O., Tagu, D., Torres, T., Zdobnov, E., KU, thw266 & Zhou, X., 2013, In: Journal of Heredity. 104, 5, p. 595-600 6 p.

      Research output: Contribution to journal › Review › Research › peer-review

    21. Published

      The germline mutational process in rhesus macaque and its implications for phylogenetic dating

      Bergeron, Lucie Adrienne, Besenbacher, S., Bakker, J., Zheng, J., Li, P., Antunes Pacheco, George, Sinding, Mikkel Holger Strander, Kamilari, M., Gilbert, M Thomas P, Schierup, M. H. & KU, thw266, 2021, In: GigaScience. 10, 5, 14 p., giab029.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. The genomic consequences of adaptive divergence and reproductive isolation between species of manakins

      Parchman, T. L., Gompert, Z., Braun, M. J., Brumfield, R. T., McDonald, D. B., Uy, J. A. C., KU, thw266, Jarvis, E. D., Schlinger, B. A. & Buerkle, C. A., 2013, In: Molecular Ecology. 22, 12, p. 3304-3317 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate

      Pan, H., Yu, H., Ravi, V., Li, C., Lee, A. P., Lian, M. M., Tay, B., Brenner, S., Wang, J., Yang, H., KU, thw266 & Venkatesh, B., 2016, In: GigaScience. 5, 12 p., 36.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. The genome of the golden apple snail Pomacea canaliculata provides insight into stress tolerance and invasive adaptation

      Liu, C., Zhang, Y., Ren, Y., Wang, H., Li, S., Jiang, F., Yin, L., Qiao, X., KU, thw266, Qian, W., Liu, B. & Fan, W., 2018, In: GigaScience. 7, 9, 13 p., giy101.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      The genome of the clonal raider ant Cerapachys biroi

      Oxley, P. R., Ji, L., Fetter-Pruneda, I., McKenzie, S. K., Li, C., Hu, H., KU, thw266 & Kronauer, D. J. C., 2014, In: Current Biology. 24, 4, p. 451-458 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 40294134