thw266 KU
Professor, Affiliate Professor
- 2015
- Published
Phylogenomic analyses data of the avian phylogenomics project
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Alfaro Nuñez, L. A., Narula, N., Liu, L., Burt, D., Ellegren, H., Edwards, S. V., Stamatakis, A. & 7 others, , 2015, In: GigaScience. 4, 9 p., 4.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic signatures of evolutionary transitions from solitary to group living
Kapheim, K. M., Pan, H., Li, C., Salzberg, S. L., Puiu, D., Magoc, T., Robertson, H. M., Hudson, M. E., Venkat, A., Fischman, B. J., Hernandez, A., Yandell, M., Ence, D., Holt, C., Yocum, G. D., Kemp, W. P., Bosch, J., Waterhouse, R. M., Zdobnov, E. M., Stolle, E. & 32 others, , 2015, In: Science (New York, N.Y.). 348, 6239, p. 1139-1143 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Olfactory receptor subgenomes linked with broad ecological adaptations in sauropsida
Khan, I., Yang, Z., Maldonado, E., Li, C., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2015, In: MOLECULAR BIOLOGY AND EVOLUTION . 32, 11, p. 2832-2843 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Genome 10K Project: a way forward
Koepfli, K-P., Paten, B., O'Brien, S. J., Antunes, A., Belov, K., Bustamante, C., Castoe, T. A., Clawson, H., Crawford, A. J., Diekhans, M., Distel, D., Durbin, R., Earl, D., Fujita, M. K., Gamble, T., Georges, A., Gemmell, N., Gilbert, M. T. P., Graves, J. M., Green, R. E. & 25 others, , 2015, In: Annual Review of Animal Biosciences. 3, p. 57-111 55 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
A genomic comparison of two termites with different social complexity
Korb, J., Poulsen, Michael, Hu, H., Li, C., Boomsma, Jacobus J., KU, thw266 & Liebig, J., 2015, In: Frontiers in Genetics. 6, 12 p., 9.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Outbred genome sequencing and CRISPR/Cas9 gene editing in butterflies
Li, X., Fan, D., Zhang, W., Liu, G., Zhang, L., Zhao, L., Fang, X., Chen, L., Dong, Y., Chen, Y., Ding, Y., Zhao, R., Feng, M., Zhu, Y., Feng, Y., Jiang, X., Zhu, D., Xiang, H., Feng, X., Li, S. & 4 others, , 2015, In: Nature Communications. 6, 10 p., 8212.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Temporal dynamics of avian populations during pleistocene revealed by whole-genome sequences
Nadachowska-Brzyska, K., Li, C., Smeds, L., KU, thw266 & Ellegren, H., 2015, In: Current Biology. 25, 10, p. 1375-1380 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient population genomics and the study of evolution
Parks, M., Subramanian, S., Baroni, C., Salvatore, M. C., KU, thw266, Millar, C. D. & Lambert, D. M., 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes
Sun, Y-B., Xiong, Z-J., Xiang, X-Y., Liu, S-P., Zhou, W-W., Tu, X-L., Zhong, L., Wang, L., Wu, D-D., Zhang, B-L., Zhu, C-L., Yang, M-M., Chen, H-M., Li, F., Zhou, L., Feng, S-H., Huang, C., Zhang, G., Irwin, D., Hillis, D. M. & 5 others, , 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 11, p. E1257-E1262 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
The Genome of Dendrobium officinale Illuminates the Biology of the Important Traditional Chinese Orchid Herb
Yan, L., Wang, X., Liu, H., Tian, Y., Lian, J., Yang, R., Hao, S., Wang, X., Yang, S., Li, Q., Qi, S., Kui, L., Okpekum, M., Ma, X., Zhang, J., Ding, Z., KU, thw266, Wang, W., Dong, Y. & Sheng, J., 2015, In: Molecular Plant. 8, 6, p. 922-934 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bird sequencing project takes off
KU, thw266, Rahbek, Carsten, Graves, G. R., Jarvis, E. D. & Gilbert, M Thomas P, 2015, In: Nature. 522, 7554, p. 34 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Improving the ostrich genome assembly using optical mapping data
Zhang, J., Li, C., Zhou, Q. & KU, thw266, 2015, In: GigaScience. 4, 3 p., 24.Research output: Contribution to journal › Journal article › Research › peer-review
- 2014
Advances in genome editing technology and its promising application in evolutionary and ecological studies
Chen, L., Tang, L., Xiang, H., Jin, L., Li, Q., Dong, Y., Wang, W. & KU, thw266, 2014, In: GigaScience. 3, 24, 10 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Low frequency of paleoviral infiltration across the avian phylogeny
Cui, J., Zhao, W., Huang, Z., Jarvis, E. D., Gilbert, M Thomas P, Walker, P. J., Holmes, E. C. & KU, thw266, 2014, In: Genome Biology (Online Edition). 15, 12, 13 p., 539.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes
Fang, X., Seim, I., Huang, Z., Gerashchenko, M. V., Xiong, Z., Turanov, A. A., Zhu, Y., Lobanov, A. V., Fan, D., Yim, S. H., Yao, X., Ma, S., Yang, L., Lee, S-G., Kim, E. B., Bronson, R. T., Sumbera, R., Buffenstein, R., Zhou, X., Krogh, A. & 4 others, , 2014, In: Cell Reports. 8, 5, p. 1354-1364 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
High-coverage sequencing and annotated assemblies of the budgerigar genome
Ganapathy, G., Howard, J. T., Ward, J. M., Li, J., Li, B., Li, Y., Xiong, Y., Zhang, Y., Zhou, S., Schwartz, D. C., Schatz, M., Aboukhalil, R., Fedrigo, O., Bukovnik, L., Wang, T., Wray, G., Rasolonjatovo, I., Winer, R., Knight, J. R., Koren, S. & 4 others, , 8 Jul 2014, In: GigaScience. 3, 1, 11.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., Vandewege, M. W., John, J. A. S., Capella-Gutierrez, S., Castoe, T. A., Kern, C., Fujita, M. K., Opazo, J. C., Jurka, J., Kojima, K. K., Caballero, J., Hubley, R. M., Smit, A. F., Platt, R. N., Lavoie, C. A. & 35 others, , 2014, In: Science. 346, 6215, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles
Greenwold, M. J., Bao, W., Jarvis, E. D., Hu, H., Li, C., Gilbert, M Thomas P, KU, thw266 & Sawyer, R. H., 2014, In: B M C Evolutionary Biology. 14, 16 p., 249.Research output: Contribution to journal › Journal article › Research › peer-review
Sensory Rewiring in an Echolocator: Genome-Wide Modification of Retinogenic and Auditory Genes in the Bat Myotis davidii
Hudson, N. J., Baker, M. L., Hart, N. S., Wynne, J. W., Gu, Q., Huang, Z., KU, thw266, Ingham, A. B., Wang, L. & Reverter, A., 2014, In: G3: Genes, Genomes, Genetics. 4, 10, p. 1825-1835 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-genome analyses resolve early branches in the tree of life of modern birds
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G. & 85 others, , 2014, In: Science. 346, 6215, p. 1320-1331 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment
Li, C., Zhang, Y., Li, J., Kong, L., Hu, H., Pan, H., Xu, L., Deng, Y., Li, Q., Jin, L., Yu, H., Chen, Y., Liu, B., Yang, L., Liu, S., Zhang, Y., Lang, Y., Xia, J., He, W., Shi, Q. & 21 others, , 2014, In: GigaScience. 3, 27, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior
Li, Q., Wang, Z., Lian, J., Schiøtt, M., Jin, L., Zhang, P., Zhang, Y., Nygaard, S., Peng, Z., Zhou, Y., Deng, Y., Zhang, W., Boomsma, Jacobus J. & KU, thw266, 2014, In: Nature Communications. 5, 11 p., 4943.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species
Li, S., Li, B., Cheng, C., Xiong, Z., Liu, Q., Lai, J., Carey, H. V., Zhang, Q., Zheng, H., Wei, S., Zhang, H., Chang, L., Liu, S., Zhang, S., Yu, B., Zeng, X., Hou, Y., Nie, W., Guo, Y., Chen, T. & 13 others, , 2014, In: Genome Biology (Online Edition). 15, 16 p., 557.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears
Liu, S., Lorenzen, E., Fumagalli, M., Li, B., Harris, K., Xiong, Z., Zhou, L., Korneliussen, T. S., Somel, M., Babbitt, C., Wray, G., Li, J., He, W., Wang, Z., Fu, W., Xiang, X., Morgan, C. C., Doherty, A., O'Connell, M. J., McInerney, J. O. & 9 others, , 2014, In: Cell. 157, 4, p. 785-794 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence for a single loss of mineralized teeth in the common avian ancestor
Meredith, R. W., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D. & Springer, M. S., 2014, In: Science. 346, 6215, 6 p., 1254390.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genome of the clonal raider ant Cerapachys biroi
Oxley, P. R., Ji, L., Fetter-Pruneda, I., McKenzie, S. K., Li, C., Hu, H., KU, thw266 & Kronauer, D. J. C., 2014, In: Current Biology. 24, 4, p. 451-458 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary genomics and adaptive evolution of the hedgehog gene family (Shh, Ihh and Dhh) in vertebrates
Pereira, J., Johnson, W. E., O'Brien, S. J., Jarvis, E. D., KU, thw266, Gilbert, M Thomas P, Vasconcelos, V. & Antunes, A., 2014, In: PloS one. 9, 12, 35 p., e74132.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Convergent transcriptional specializations in the brains of humans and song-learning birds
Pfenning, A. R., Hara, E., Whitney, O., Rivas, M. V., Wang, R., Roulhac, P. L., Howard, J. T., Wirthlin, M., Lovell, P. V., Ganapathy, G., Mouncastle, J., Moseley, M. A., Thompson, J. W., Soderblom, E. J., Iriki, A., Kato, M., Gilbert, M. T. P., Zhang, G., Bakken, T., Bongaarts, A. & 5 others, , 2014, In: Science. 346, 6215, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Epigenetic modification and inheritance in sexual reversal of fish
Shao, C., Li, Q., Chen, S., Zhang, P., Lian, J., Hu, Q., Sun, B., Jin, L., Liu, S., Wang, Z., Zhao, H., Jin, Z., Liang, Z., Li, Y., Zheng, Q., Zhang, Y., Wang, J. & KU, thw266, 2014, In: Genome Research. 24, 4, p. 604-615 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular traces of alternative social organization in a termite genome
Terrapon, N., Li, C., Robertson, H. M., Ji, L., Meng, X., Booth, W., Chen, Z., Childers, C. P., Glastad, K. M., Gokhale, K., Gowin, J., Gronenberg, W., Hermansen, R. A., Hu, H., Hunt, B. G., Huylmans, A. K., Khalil, S. M. S., Mitchell, R. D., Munoz-Torres, M. C., Mustard, J. A. & 23 others, , 2014, In: Nature Communications. 5, 12 p., 3636.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complementary symbiont contributions to plant decomposition in a fungus-farming termite
Thomas-Poulsen, M., Hu, H., Li, C., Chen, Z., Xu, L., Otani, S., Nygaard, S., Nobre, T., Klaubauf, S., Schindler, P. M., Hauser, F., Pan, H., Yang, Z., Sonnenberg, A. S. M., de Beer, Z. W., Zhang, Y., Wingfield, M. J., Grimmelikhuijzen, C., de Vries, R. P., Korb, J. & 4 others, , 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 40, 6 p., 14500-14505.Research output: Contribution to journal › Journal article › Research › peer-review
The locust genome provides insight into swarm formation and long-distance flight
Wang, X., Fang, X., Yang, P., Jiang, X., Jiang, F., Zhao, D., Li, B., Cui, F., Wei, J., Ma, C., Wang, Y., He, J., Luo, Y., Wang, Z., Guo, X., Guo, W., Wang, X., Zhang, Y., Yang, M., Hao, S. & 25 others, , 2014, In: Nature Communications. 5, 9 p., 2957.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Temporal genomic evolution of bird sex chromosomes
Wang, Z., Zhang, J., Yang, W., An, N., Zhang, P., KU, thw266 & Zhou, Q., 2014, In: B M C Evolutionary Biology. 14, 12 p., 250.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes
You, X., Bian, C., Zan, Q., Xu, X., Liu, X., Chen, J., Wang, J., Qiu, Y., Li, W., Zhang, X., Sun, Y., Chen, S., Hong, W., Li, Y., Cheng, S., Fan, G., Shi, C., Liang, J., Tom Tang, Y., Yang, C. & 24 others, , 2014, In: Nature Communications. 5, 5594, 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A flock of Genomes
KU, thw266, Jarvis, E. D. & Gilbert, M Thomas P, 2014, In: Science. 346, 6215, p. 1308-1309 2 p.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Comparative genomic data of the Avian Phylogenomics Project
KU, thw266, Li, B., Li, C., Gilbert, M Thomas P, Jarvis, E. D., Wang, J. & Avian Genome Consortium, A. G. C., 2014, In: GigaScience. 3, 8 p., 26.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genomics reveals insights into avian genome evolution and adaptation
Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W. & 85 others, , 2014, In: Science. 346, 6215, p. 1311-1320 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complex evolutionary trajectories of sex chromosomes across bird taxa
Zhou, Q., Zhang, J., Bachtrog, D., An, N., Huang, Q., Jarvis, E. D., Gilbert, M Thomas P & KU, thw266, 2014, In: Science. 346, 6215, 8 p., 1246338.Research output: Contribution to journal › Journal article › Research › peer-review
- 2013
Genome of Drosophila suzukii, the Spotted Wing Drosophila
Chiu, J. C., Jiang, X., Zhao, L., Hamm, C. A., Cridland, J. M., Saelao, P., Hamby, K. A., Lee, E. K., Kwok, R. S., KU, thw266, Zalom, F. G., Walton, V. M. & Begun, D. J., 2013, In: G3: Genes, Genomes, Genetics. 3, 12, p. 2257-2271 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment
Evans, J. D., Brown, S. J., Hackett, K. J., Robinson, G., Richards, S., Lawson, D., Elsik, C., Coddington, J., Edwards, O., Emrich, S., Gabaldon, T., Goldsmith, M., Hanes, G., Misof, B., Muñoz-Torres, M., Niehuis, O., Papanicolaou, A., Pfrender, M., Poelchau, M., Purcell-Miramontes, M. & 7 others, , 2013, In: Journal of Heredity. 104, 5, p. 595-600 6 p.Research output: Contribution to journal › Review › Research › peer-review
Reference-assisted chromosome assembly
Kim, J., Larkin, D. M., Cai, Q., Asan, Zhang, Y., Ge, R., Auvil, L., Capitanu, B., KU, thw266, Lewin, H. A. & Ma, J., 2013, In: PNAS. 110, 5, p. 1785-1790 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes: [plus] Erratum
Kocher, S. D., Li, C., Yang, W., Tan, H., Yi, S. V., Yang, X., Hoekstra, H. E., KU, thw266, Pierce, N. E. & Yu, D. W., 2013, In: Genome Biology. 14, 12, 14 p., R142 .Research output: Contribution to journal › Journal article › Research › peer-review
In-Depth Tanscriptomic Analysis on Giant Freshwater Prawns
Mohd-Shamsudin, M. I., Kang, Y., Lili, Z., Tan, T. T., Kwong, Q. B., Liu, H., KU, thw266, Othman, R. Y. & Bhassu, S., 2013, In: PLoS ONE. 8, 5, 14 p., e60839.Research output: Contribution to journal › Journal article › Research › peer-review
Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation
Pan, G., Xu, J., Li, T., Xia, Q., Liu, S-L., Zhang, G., Li, S., Li, C., Liu, H., Yang, L., Liu, T., Zhang, X., Wu, Z., Fan, W., Dang, X., Xiang, H., Tao, M., Li, Y., Hu, J., Li, Z. & 13 others, , 2013, In: BMC Genomics. 14, 14 p., 186.Research output: Contribution to journal › Journal article › Research › peer-review
The genomic consequences of adaptive divergence and reproductive isolation between species of manakins
Parchman, T. L., Gompert, Z., Braun, M. J., Brumfield, R. T., McDonald, D. B., Uy, J. A. C., KU, thw266, Jarvis, E. D., Schlinger, B. A. & Buerkle, C. A., 2013, In: Molecular Ecology. 22, 12, p. 3304-3317 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
Deep parallel sequencing reveals conserved and novel miRNAs in gill and hepatopancreas of giant freshwater prawn
Tan, T. T., Chen, M., Harikrishna, J. A., Khairuddin, N., Shamsudin, M. I. M., KU, thw266 & Bhassu, S., 2013, In: Fish and Shellfish Immunology. 35, 4, p. 1061-1069 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan
Wang, Z., Pascual-Anaya, J., Zadissa, A., Li, W., Niimura, Y., Huang, Z., Li, C., White, S., Xiong, Z., Fang, D., Wang, B., Ming, Y., Chen, Y., Zheng, Y., Kuraku, S., Pignatelli, M., Herrero, J., Beal, K., Nozawa, M., Li, Q. & 14 others, , 2013, In: Nature Genetics. 45, 6, p. 701-706 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication
Xiang, H., Li, X., Dai, F., Xu, X., Tan, A., Chen, L., KU, thw266, Ding, Y., Li, Q., Lian, J., Willden, A., Guo, Q., Xia, Q., Wang, J. & Wang, W., 2013, In: BMC Genomics. 14, 11 p., 646.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity
Zhang, G., Cowled, C., Shi, Z., Huang, Z., Bishop-Lilly, K. A., Fang, X., Wynne, J. W., Xiong, Z., Baker, M. L., Zhao, W., Tachedjian, M., Zhu, Y., Zhou, P., Jiang, X., Ng, J., Yang, L., Wu, L., Xiao, J., Feng, Y., Chen, Y. & 8 others, , 2013, In: Science (New York, N.Y.). 339, 6118Research output: Contribution to journal › Journal article › Research › peer-review
- 2012
- Published
Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator
Bonasio, R., Li, Q., Lian, J., Mutti, N. S., Jin, L., Zhao, H., Zhang, P., Wen, P., Xiang, H., Ding, Y., Jin, Z., Shen, S. S., Wang, Z., Wang, W., Wang, J., Berger, S. L., Liebig, J., KU, thw266 & Reinberg, D., 2012, In: Current Biology. 22, 19, p. 1755-1764 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 40294134
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Molecular traces of alternative social organization in a termite genome
Research output: Contribution to journal › Journal article › Research › peer-review
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3124
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Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior
Research output: Contribution to journal › Journal article › Research › peer-review
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2708
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Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment
Research output: Contribution to journal › Journal article › Research › peer-review
Published