Antton Alberdi Estibaritz
Associate Professor
Section for Hologenomics
Øster Farimagsgade 5
1353 København K
- 2024
- Published
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics
Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bat diversity boosts ecosystem services: Evidence from pine processionary moth predation
Augusto, A. M., Raposeira, H., Horta, P., Mata, V. A., Aizpurua Arrieta, Ostaizka, Alberdi, Antton, Jones, G., Razgour, O., Santos, S. A. P., Russo, D. & Rebelo, H., 2024, In: Science of the Total Environment. 912, 10 p., 169387.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA metabarcoding reveals seasonal changes in diet composition across four arthropod-eating lizard species (Phrynosomatidae: Sceloporus)
Hernández, M., Hereira-Pacheco, S., Alberdi, Antton, De La Vega-Pérez, A. H. D., Estrada-Torres, A., Ancona, S. & Navarro-Noya, Y. E., 2024, In: Integrative Zoology. 19, 3, p. 480-495 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data
Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.Research output: Contribution to journal › Review › Research › peer-review
- E-pub ahead of print
Seasonal dietary changes relate to gut microbiota composition depending on the host species but do not correlate with gut microbiota diversity in arthropod-eating lizards
Hernández, M., Ancona, S., Hereira-Pacheco, S., de la Vega-Pérez, A. H. D., Alberdi, Antton & Navarro-Noya, Y. E., 2024, (E-pub ahead of print) In: Molecular Ecology. 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Rice, E. S., Alberdi, A., Alfieri, J., Athrey, G., Balacco, J. R., Bardou, P., Blackmon, H., Charles, M., Cheng, H. H., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Gilbert, M. T. P., Hearn, C. J., Jarvis, E. D., Klopp, C., Marcos, S., Mason, A. S., Velez-Irizarry, D. & 2 others, , 2023, In: BMC Biology. 21, 17 p., 267.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A simplified protocol for DNA extraction from FTA cards for faecal microbiome studies
Botnen, A. B., Bjørnsen, Mads Bjørn, Alberdi, Antton, Gilbert, M Thomas P & Aizpurua Arrieta, Ostaizka, 2023, In: Heliyon. 9, 1, 10 p., e12861.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A species-level trait dataset of bats in Europe and beyond
Froidevaux, J. S. P., Toshkova, N., Barbaro, L., Benítez-López, A., Kerbiriou, C., Le Viol, I., Pacifici, M., Santini, L., Stawski, C., Russo, D., Dekker, J., Alberdi, A., Amorim, F., Ancillotto, L., Barré, K., Bas, Y., Cantú-Salazar, L., Dechmann, D. K. N., Devaux, T., Eldegard, K. & 28 others, , 2023, In: Scientific Data. 10, 13 p., 253.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial topography of the upper and lower respiratory tract in pigs
Pirolo, Mattia, Espinosa-Gongora, C., Alberdi, Antton, Eisenhofer Philipona, Raphael A, Soverini, M., Eriksen, Esben Østergaard, Pedersen, Ken Steen & Guardabassi, Luca, 2023, In: BMC Animal Microbiome. 5, 13 p., 5.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of microbial genome completeness on metagenomic functional inference
Eisenhofer Philipona, Raphael A, Larrañaga, Iñaki Odriozola & Alberdi, Antton, 2023, In: ISME communications. 3, 5 p., 12.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 152300361
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361
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Applied Hologenomics: Feasibility and Potential in Aquaculture
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
206
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The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
171
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An integrated framework to identify wildlife populations under threat from climate change
Research output: Contribution to journal › Journal article › Research › peer-review
Published