thw266 KU

thw266 KU

Professor, Affiliate Professor

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    ORCID: 0000-0001-6860-1521

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    1. Published

      Evolutionary genomics and adaptive evolution of the hedgehog gene family (Shh, Ihh and Dhh) in vertebrates

      Pereira, J., Johnson, W. E., O'Brien, S. J., Jarvis, E. D., KU, thw266, Gilbert, M Thomas P, Vasconcelos, V. & Antunes, A., 2014, In: PloS one. 9, 12, 35 p., e74132.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Convergent transcriptional specializations in the brains of humans and song-learning birds

      Pfenning, A. R., Hara, E., Whitney, O., Rivas, M. V., Wang, R., Roulhac, P. L., Howard, J. T., Wirthlin, M., Lovell, P. V., Ganapathy, G., Mouncastle, J., Moseley, M. A., Thompson, J. W., Soderblom, E. J., Iriki, A., Kato, M., Gilbert, M. T. P., Zhang, G., Bakken, T., Bongaarts, A. & 5 others, Bernard, A., Lein, E., Mello, C. V., Hartemink, A. J. & Jarvis, E. D., 2014, In: Science. 346, 6215, 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Gut Microbiota Linked with Reduced Fear of Humans in Red Junglefowl Has Implications for Early Domestication

      Puetz, Lara Christine, Delmont, T. O., Aizpurua Arrieta, Ostaizka, Guo, C., KU, thw266, Katajamaa, R., Jensen, P. & Gilbert, M Thomas P, 2021, In: Advanced Genetics. 2, 4, 12 p., 2100018.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Canalized gene expression during development mediates caste differentiation in ants

      Qiu, Bitao, Dai, X., Li, P., Larsen, Rasmus Stenbak, Li, Ruyan, Price, A. L., Ding, G., Texada, Michael James, Zhang, X., Zuo, D., Gao, Q., Jiang, W., Wen, T., Pontieri, L., Guo, C., Rewitz, Kim, Li, Q., Liu, W., Boomsma, Jacobus J. & KU, thw266, 2022, In: Nature Ecology and Evolution. 6, 11, p. 1753-1765

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Towards reconstructing the ancestral brain gene-network regulating caste differentiation in ants

      Qiu, Bitao, Larsen, Rasmus Stenbak, Chang, N., Wang, J., Boomsma, Jacobus J. & KU, thw266, 2018, In: Nature Ecology & Evolution. 2, 11, p. 1782-1791

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. The yak genome and adaptation to life at high altitude

      Qiu, Q., Zhang, G., Ma, T., Qian, W., Wang, J., Ye, Z., Cao, C., Hu, Q., Kim, J., Larkin, D. M., Auvil, L., Capitanu, B., Ma, J., Lewin, H. A., Qian, X., Lang, Y., Zhou, R., Wang, L., Wang, K., Xia, J. & 29 others, Liao, S., Pan, S., Lu, X., Hou, H., Wang, Y., Zang, X., Yin, Y., Ma, H., Zhang, J., Wang, Z., Zhang, Y., Zhang, D., Yonezawa, T., Hasegawa, M., Zhong, Y., Liu, W., Zhang, Y., Huang, Z., Zhang, S., Long, R., Yang, H., Wang, J., Lenstra, J. A., Cooper, D. N., Wu, Y., Wang, J., Shi, P., Wang, J. & Liu, J., 2012, In: Nature Genetics. 44, 8, p. 946-951 6 p.

      Research output: Contribution to journal › Letter › Research › peer-review

    7. Published

      The evolution of ancestral and species-specific adaptations in snowfinches at the Qinghai–Tibet Plateau

      Qu, Y., Chen, C., Chen, X., Hao, Y., She, H., Wang, M., Ericson, P. G. P., Lin, H., Cai, T., Song, G., Jia, C., Chen, C., Zhang, H., Li, J., Liang, L., Wu, T., Zhao, J., Gao, Q., Zhang, G., Zhai, W. & 3 others, Zhang, C., Zhang, Y. E. & Lei, F., 2021, In: PNAS. 118, 13, 10 p., e2012398118.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly

      Rando, H. M., Farre, M., Robson, M. P., Won, N. B., Johnson, J. L., Buch, R., Bastounes, E. R., Xiang, X., Feng, S., Liu, S., Xiong, Z., Kim, J., KU, thw266, Trut, L. N., Larkin, D. M. & Kukekova, A. V., 2018, In: Genes. 9, 6, 21 p., 308.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Detoxification Genes Differ Between Cactus-, Fruit-, and Flower-Feeding Drosophila

      Rane, R. V., Clarke, D. F., Pearce, S. L., KU, thw266, Hoffmann, A. A. & Oakeshott, J. G., 2019, In: The Journal of Heredity. 110, 1, p. 80-91 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Genomic changes associated with adaptation to arid environments in cactophilic Drosophila species

      Rane, R. V., Pearce, S. L., Li, F., Coppin, C., Schiffer, M., Shirriffs, J., Sgro, C. M., Griffin, P. C., KU, thw266, Lee, S. F., Hoffmann, A. A. & Oakeshott, J. G., 2019, In: BMC Genomics. 20, p. 1-22 52.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Towards complete and error-free genome assemblies of all vertebrate species

      Rhie, A., McCarthy, S. A., Fedrigo, O., Damas, J., Formenti, G., Koren, S., Uliano-Silva, M., Chow, W., Fungtammasan, A., Kim, J., Lee, C., Ko, B. J., Chaisson, M., Gedman, G. L., Cantin, L. J., Thibaud-Nissen, F., Haggerty, L., Bista, I., Smith, M., Haase, B. & 107 others, Mountcastle, J., Winkler, S., Paez, S., Howard, J., Vernes, S. C., Lama, T. M., Grutzner, F., Warren, W. C., Balakrishnan, C. N., Burt, D., George, J. M., Biegler, M. T., Iorns, D., Digby, A., Eason, D., Robertson, B., Edwards, T., Wilkinson, M., Turner, G., Meyer, A., Kautt, A. F., Franchini, P., Detrich, H. W., Svardal, H., Wagner, M., Naylor, G. J. P., Pippel, M., Malinsky, M., Mooney, M., Simbirsky, M., Hannigan, B. T., Pesout, T., Houck, M., Misuraca, A., Kingan, S. B., Hall, R., Kronenberg, Z., Sović, I., Dunn, C., Ning, Z., Hastie, A., Lee, J., Selvaraj, S., Green, R. E., Putnam, N. H., Gut, I., Ghurye, J., Garrison, E., Sims, Y., Collins, J., Pelan, S., Torrance, J., Tracey, A., Wood, J., Dagnew, R. E., Guan, D., London, S. E., Clayton, D. F., Mello, C. V., Friedrich, S. R., Lovell, P. V., Osipova, E., Al-Ajli, F. O., Secomandi, S., Kim, H., Theofanopoulou, C., Hiller, M., Zhou, Y., Harris, R. S., Makova, K. D., Medvedev, P., Hoffman, J., Masterson, P., Clark, K., Martin, F., Howe, K., Flicek, P., Walenz, B. P., Kwak, W., Clawson, H., Diekhans, M., Nassar, L., Paten, B., Kraus, R. H. S., Crawford, A. J., Gilbert, M Thomas P, KU, thw266, Venkatesh, B., Murphy, R. W., Koepfli, K., Shapiro, B., Johnson, W. E., Di Palma, F., Marques-Bonet, T., Teeling, E. C., Warnow, T., Graves, J. M., Ryder, O. A., Haussler, D., O’Brien, S. J., Korlach, J., Lewin, H. A., Howe, K., Myers, E. W., Durbin, R., Phillippy, A. M. & Jarvis, E. D., 2021, In: Nature. 592, 7856, p. 737-746 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      31º South: The physiology of adaptation to arid conditions in a passerine bird

      Ribeiro, Â. M., Puetz, Lara Christine, Pattinson, N. B., Dalén, L., Deng, Y., KU, thw266, Rodrigues da Fonseca, Rute Andreia, Smit, B. & Gilbert, M Thomas P, 2019, In: Molecular Ecology. 28, 16, p. 3709-3721 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Pervasive incomplete lineage sorting illuminates speciation and selection in primates

      Rivas-González, I., Rousselle, M., Li, F., Zhou, L., Dutheil, J. Y., Munch, K., Shao, Y., Wu, D., Schierup, M. H. & KU, thw266, 2023, In: Science (New York, N.Y.). 380, 6648, 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Genomic Takeover by Transposable Elements in the Strawberry Poison Frog

      Rogers, R. L., Zhou, L., Chu, C., Márquez, R., Corl, A., Linderoth, T., Freeborn, L., MacManes, M. D., Xiong, Z., Zheng, J., Guo, C., Xun, X., Kronforst, M. R., Summers, K., Wu, Y., Yang, H., Richards-Zawacki, C. L., KU, thw266 & Nielsen, R., 2018, In: MOLECULAR BIOLOGY AND EVOLUTION . 35, 12, p. 2913-2927

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Relaxed selection underlies genome erosion in socially parasitic ant species

      Schrader, Lukas, Pan, H., Bollazzi, M., Schiøtt, M., Larabee, F. J., Bi, X., Deng, Y., KU, thw266, Boomsma, Jacobus J. & Rabeling, C., 2021, In: Nature Communications. 12, 13 p., 2918.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features

      Seki, R., Li, C., Fang, Q., Hayashi, S., Egawa, S., Hu, J., Xu, L., Pan, H., Kondo, M., Sato, T., Matsubara, H., Kamiyama, N., Kitajima, K., Saito, D., Liu, Y., Gilbert, T., Zhou, Q., Xu, X-Z., Shiroishi, T., Irie, N. & 2 others, Tamura, K. & KU, thw266, 6 Feb 2017, In: Nature Communications. 8, 14 p., 14229.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights

      Shao, C., Sun, S., Liu, K., Wang, J., Li, S., Liu, Q., Deagle, B. E., Seim, I., Biscontin, A., Wang, Q., Liu, X., Kawaguchi, S., Liu, Y., Jarman, S., Wang, Y., Wang, H. Y., Huang, G., Hu, J., Feng, B., De Pittà, C. & 29 others, Liu, S., Wang, R., Ma, K., Ying, Y., Sales, G., Sun, T., Wang, X., Zhang, Y., Zhao, Y., Pan, S., Hao, X., Wang, Y., Xu, J., Yue, B., Sun, Y., Zhang, H., Xu, M., Liu, Y., Jia, X., Zhu, J., Liu, S., Ruan, J., KU, thw266, Yang, H., Xu, X., Wang, J., Zhao, X., Meyer, B. & Fan, G., 2023, In: Cell. 186, 6, p. 1279-1294.e19 36 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Epigenetic modification and inheritance in sexual reversal of fish

      Shao, C., Li, Q., Chen, S., Zhang, P., Lian, J., Hu, Q., Sun, B., Jin, L., Liu, S., Wang, Z., Zhao, H., Jin, Z., Liang, Z., Li, Y., Zheng, Q., Zhang, Y., Wang, J. & KU, thw266, 2014, In: Genome Research. 24, 4, p. 604-615 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry

      Shao, C., Bao, B., Xie, Z., Chen, X., Li, B., Jia, X., Yao, Q., Ortí, G., Li, W., Li, X., Hamre, K., Xu, J., Wang, L., Chen, F., Tian, Y., Schreiber, A. M., Wang, N., Wei, F., Zhang, J., Dong, Z. & 16 others, Gao, L., Gai, J., Sakamoto, T., Mo, S., Chen, W., Shi, Q., Li, H., Xiu, Y., Li, Y., Xu, W., Shi, Z., KU, thw266, Power, D. M., Wang, Q., Schartl, M. & Chen, S., 1 Jan 2017, In: Nature Genetics. 49, 1, p. 119-124 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration

      Shao, Y., Wang, X., Zhang, J., Li, M. L., Wu, S., Ma, X., Wang, X., Zhao, H., Li, Y., Zhu, H. H., Irwin, D. M., Wang, D., KU, thw266, Ruan, J. & Wu, D., 2020, In: Nature Communications. 11, 15 p., 2656.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Phylogenomic analyses provide insights into primate evolution

      Shao, Y., Zhou, L., Li, F., Zhao, L., Zhang, B. L., Shao, F., Chen, J. W., Chen, C. Y., Bi, X., Zhuang, X. L., Zhu, H. L., Hu, J., Sun, Z., Li, X., Wang, D., Rivas-González, I., Wang, S., Wang, Y. M., Chen, W., Li, G. & 23 others, Lu, H. M., Liu, Y., Kuderna, L. F. K., Farh, K. K. H., Fan, P. F., Yu, L., Li, M., Liu, Z. J., Tiley, G. P., Yoder, A. D., Roos, C., Hayakawa, T., Marques-Bonet, T., Rogers, J., Stenson, P. D., Cooper, D. N., Schierup, M. H., Yao, Y. G., Zhang, Y. P., Wang, W., Qi, X. G., KU, thw266 & Wu, D. D., 2023, In: Science (New York, N.Y.). 380, 6648, p. 913-924 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast

      Shen, Y., Gao, F., Wang, Y., Wang, Y., Zheng, J., Gong, J., Zhang, J., Luo, Z., Schindler, D., Deng, Y., Ding, W., Lin, T., Swidah, R., Zhao, H., Jiang, S., Zeng, C., Chen, S., Chen, T., Wang, Y., Luo, Y. & 11 others, Mitchell, L., Bader, J. S., KU, thw266, Shen, X., Wang, J., Fu, X., Dai, J., Boeke, J. D., Yang, H., Xu, X. & Cai, Y., 2023, In: Cell Genomics. 3, 11, 19 p., 100364.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Parallel evolution of fish bi-modal breathing and expansion of olfactory receptor (OR) genes: toward a universal ORs nomenclature

      Silva, L., Mendes, T., Ramos, L., KU, thw266 & Antunes, A., 2023, In: Journal of Genetics and Genomics. 50, 8, 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Complexity of avian evolution revealed by family-level genomes

      Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, Zhou, C., Xie, Y., Huang, Z., Cao, Z., Yan, Z., Ogilvie, H. A., Nakhleh, L., Lindow, Bent Erik Kramer, Morel, B., Fjeldså, Jon, Hosner, Peter Andrew, Rodrigues da Fonseca, Rute Andreia, Petersen, Bent, Tobias, J. A., Székely, T., Kennedy, J. D., Hart Reeve, A., Liker, A., Stervander, M., Antunes, A., Tietze, D. T., Bertelsen, Mads Frost, Lei, F., Rahbek, Carsten, Graves, G. R., Schierup, M. H., Warnow, T., Braun, E. L., Gilbert, M Thomas P, Jarvis, E. D., Mirarab, S. & KU, thw266, 2024, In: Nature. 629, p. 851–860 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Comparative Phylogenomics, a Stepping Stone for Bird Biodiversity Studies

      Stiller, Josefin & KU, thw266, 2019, In: Diversity. 11, 7, 19 p., 115.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 40294134