Promoting transparency and reproducibility in enhanced molecular simulations

Research output: Contribution to journalEditorialResearchpeer-review

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Promoting transparency and reproducibility in enhanced molecular simulations. / Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Tribello, Gareth A.; Banas, Pavel; Barducci, Alessandro; Bernetti, Mattia; Bolhuis, Peter G.; Bottaro, Sandro; Branduardi, Davide; Capelli, Riccardo; Carloni, Paolo; Ceriotti, Michele; Cesari, Andrea; Chen, Haochuan; Chen, Wei; Colizzi, Francesco; De, Sandip; De La Pierre, Marco; Donadio, Davide; Drobot, Viktor; Ensing, Bernd; Ferguson, Andrew L.; Filizola, Marta; Fraser, James S.; Fu, Haohao; Gasparotto, Piero; Gervasio, Francesco Luigi; Giberti, Federico; Gil-Ley, Alejandro; Giorgino, Toni; Heller, Gabriella T.; Hocky, Glen M.; Iannuzzi, Marcella; Invernizzi, Michele; Jelfs, Kim E.; Jussupow, Alexander; Kirilin, Evgeny; Laio, Alessandro; Limongelli, Vittorio; Lindorff-Larsen, Kresten; Lohr, Thomas; Marinelli, Fabrizio; Martin-Samos, Layla; Masetti, Matteo; Meyer, Ralf; Michaelides, Angelos; Molteni, Carla; Morishita, Tetsuya; Nava, Marco; Paissoni, Cristina; Papaleo, Elena; Parrinello, Michele; Pfaendtner, Jim; Piaggi, Pablo; Piccini, GiovanniMaria; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Provasi, Davide; Quigley, David; Raiteri, Paolo; Raniolo, Stefano; Rydzewski, Jakub; Salvalaglio, Matteo; Sosso, Gabriele Cesare; Spiwok, Vojtech; Sponer, Jiri; Swenson, David W. H.; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew.

In: Nature Methods, Vol. 16, No. 8, 2019, p. 670-673.

Research output: Contribution to journalEditorialResearchpeer-review

Harvard

Bonomi, M, Bussi, G, Camilloni, C, Tribello, GA, Banas, P, Barducci, A, Bernetti, M, Bolhuis, PG, Bottaro, S, Branduardi, D, Capelli, R, Carloni, P, Ceriotti, M, Cesari, A, Chen, H, Chen, W, Colizzi, F, De, S, De La Pierre, M, Donadio, D, Drobot, V, Ensing, B, Ferguson, AL, Filizola, M, Fraser, JS, Fu, H, Gasparotto, P, Gervasio, FL, Giberti, F, Gil-Ley, A, Giorgino, T, Heller, GT, Hocky, GM, Iannuzzi, M, Invernizzi, M, Jelfs, KE, Jussupow, A, Kirilin, E, Laio, A, Limongelli, V, Lindorff-Larsen, K, Lohr, T, Marinelli, F, Martin-Samos, L, Masetti, M, Meyer, R, Michaelides, A, Molteni, C, Morishita, T, Nava, M, Paissoni, C, Papaleo, E, Parrinello, M, Pfaendtner, J, Piaggi, P, Piccini, G, Pietropaolo, A, Pietrucci, F, Pipolo, S, Provasi, D, Quigley, D, Raiteri, P, Raniolo, S, Rydzewski, J, Salvalaglio, M, Sosso, GC, Spiwok, V, Sponer, J, Swenson, DWH, Tiwary, P, Valsson, O, Vendruscolo, M, Voth, GA & White, A 2019, 'Promoting transparency and reproducibility in enhanced molecular simulations', Nature Methods, vol. 16, no. 8, pp. 670-673. https://doi.org/10.1038/s41592-019-0506-8

APA

Bonomi, M., Bussi, G., Camilloni, C., Tribello, G. A., Banas, P., Barducci, A., Bernetti, M., Bolhuis, P. G., Bottaro, S., Branduardi, D., Capelli, R., Carloni, P., Ceriotti, M., Cesari, A., Chen, H., Chen, W., Colizzi, F., De, S., De La Pierre, M., ... White, A. (2019). Promoting transparency and reproducibility in enhanced molecular simulations. Nature Methods, 16(8), 670-673. https://doi.org/10.1038/s41592-019-0506-8

Vancouver

Bonomi M, Bussi G, Camilloni C, Tribello GA, Banas P, Barducci A et al. Promoting transparency and reproducibility in enhanced molecular simulations. Nature Methods. 2019;16(8):670-673. https://doi.org/10.1038/s41592-019-0506-8

Author

Bonomi, Massimiliano ; Bussi, Giovanni ; Camilloni, Carlo ; Tribello, Gareth A. ; Banas, Pavel ; Barducci, Alessandro ; Bernetti, Mattia ; Bolhuis, Peter G. ; Bottaro, Sandro ; Branduardi, Davide ; Capelli, Riccardo ; Carloni, Paolo ; Ceriotti, Michele ; Cesari, Andrea ; Chen, Haochuan ; Chen, Wei ; Colizzi, Francesco ; De, Sandip ; De La Pierre, Marco ; Donadio, Davide ; Drobot, Viktor ; Ensing, Bernd ; Ferguson, Andrew L. ; Filizola, Marta ; Fraser, James S. ; Fu, Haohao ; Gasparotto, Piero ; Gervasio, Francesco Luigi ; Giberti, Federico ; Gil-Ley, Alejandro ; Giorgino, Toni ; Heller, Gabriella T. ; Hocky, Glen M. ; Iannuzzi, Marcella ; Invernizzi, Michele ; Jelfs, Kim E. ; Jussupow, Alexander ; Kirilin, Evgeny ; Laio, Alessandro ; Limongelli, Vittorio ; Lindorff-Larsen, Kresten ; Lohr, Thomas ; Marinelli, Fabrizio ; Martin-Samos, Layla ; Masetti, Matteo ; Meyer, Ralf ; Michaelides, Angelos ; Molteni, Carla ; Morishita, Tetsuya ; Nava, Marco ; Paissoni, Cristina ; Papaleo, Elena ; Parrinello, Michele ; Pfaendtner, Jim ; Piaggi, Pablo ; Piccini, GiovanniMaria ; Pietropaolo, Adriana ; Pietrucci, Fabio ; Pipolo, Silvio ; Provasi, Davide ; Quigley, David ; Raiteri, Paolo ; Raniolo, Stefano ; Rydzewski, Jakub ; Salvalaglio, Matteo ; Sosso, Gabriele Cesare ; Spiwok, Vojtech ; Sponer, Jiri ; Swenson, David W. H. ; Tiwary, Pratyush ; Valsson, Omar ; Vendruscolo, Michele ; Voth, Gregory A. ; White, Andrew. / Promoting transparency and reproducibility in enhanced molecular simulations. In: Nature Methods. 2019 ; Vol. 16, No. 8. pp. 670-673.

Bibtex

@article{efcf56791146487f80f54035c01c9932,
title = "Promoting transparency and reproducibility in enhanced molecular simulations",
author = "Massimiliano Bonomi and Giovanni Bussi and Carlo Camilloni and Tribello, {Gareth A.} and Pavel Banas and Alessandro Barducci and Mattia Bernetti and Bolhuis, {Peter G.} and Sandro Bottaro and Davide Branduardi and Riccardo Capelli and Paolo Carloni and Michele Ceriotti and Andrea Cesari and Haochuan Chen and Wei Chen and Francesco Colizzi and Sandip De and {De La Pierre}, Marco and Davide Donadio and Viktor Drobot and Bernd Ensing and Ferguson, {Andrew L.} and Marta Filizola and Fraser, {James S.} and Haohao Fu and Piero Gasparotto and Gervasio, {Francesco Luigi} and Federico Giberti and Alejandro Gil-Ley and Toni Giorgino and Heller, {Gabriella T.} and Hocky, {Glen M.} and Marcella Iannuzzi and Michele Invernizzi and Jelfs, {Kim E.} and Alexander Jussupow and Evgeny Kirilin and Alessandro Laio and Vittorio Limongelli and Kresten Lindorff-Larsen and Thomas Lohr and Fabrizio Marinelli and Layla Martin-Samos and Matteo Masetti and Ralf Meyer and Angelos Michaelides and Carla Molteni and Tetsuya Morishita and Marco Nava and Cristina Paissoni and Elena Papaleo and Michele Parrinello and Jim Pfaendtner and Pablo Piaggi and GiovanniMaria Piccini and Adriana Pietropaolo and Fabio Pietrucci and Silvio Pipolo and Davide Provasi and David Quigley and Paolo Raiteri and Stefano Raniolo and Jakub Rydzewski and Matteo Salvalaglio and Sosso, {Gabriele Cesare} and Vojtech Spiwok and Jiri Sponer and Swenson, {David W. H.} and Pratyush Tiwary and Omar Valsson and Michele Vendruscolo and Voth, {Gregory A.} and Andrew White",
year = "2019",
doi = "10.1038/s41592-019-0506-8",
language = "English",
volume = "16",
pages = "670--673",
journal = "Nature Methods",
issn = "1548-7091",
publisher = "nature publishing group",
number = "8",

}

RIS

TY - JOUR

T1 - Promoting transparency and reproducibility in enhanced molecular simulations

AU - Bonomi, Massimiliano

AU - Bussi, Giovanni

AU - Camilloni, Carlo

AU - Tribello, Gareth A.

AU - Banas, Pavel

AU - Barducci, Alessandro

AU - Bernetti, Mattia

AU - Bolhuis, Peter G.

AU - Bottaro, Sandro

AU - Branduardi, Davide

AU - Capelli, Riccardo

AU - Carloni, Paolo

AU - Ceriotti, Michele

AU - Cesari, Andrea

AU - Chen, Haochuan

AU - Chen, Wei

AU - Colizzi, Francesco

AU - De, Sandip

AU - De La Pierre, Marco

AU - Donadio, Davide

AU - Drobot, Viktor

AU - Ensing, Bernd

AU - Ferguson, Andrew L.

AU - Filizola, Marta

AU - Fraser, James S.

AU - Fu, Haohao

AU - Gasparotto, Piero

AU - Gervasio, Francesco Luigi

AU - Giberti, Federico

AU - Gil-Ley, Alejandro

AU - Giorgino, Toni

AU - Heller, Gabriella T.

AU - Hocky, Glen M.

AU - Iannuzzi, Marcella

AU - Invernizzi, Michele

AU - Jelfs, Kim E.

AU - Jussupow, Alexander

AU - Kirilin, Evgeny

AU - Laio, Alessandro

AU - Limongelli, Vittorio

AU - Lindorff-Larsen, Kresten

AU - Lohr, Thomas

AU - Marinelli, Fabrizio

AU - Martin-Samos, Layla

AU - Masetti, Matteo

AU - Meyer, Ralf

AU - Michaelides, Angelos

AU - Molteni, Carla

AU - Morishita, Tetsuya

AU - Nava, Marco

AU - Paissoni, Cristina

AU - Papaleo, Elena

AU - Parrinello, Michele

AU - Pfaendtner, Jim

AU - Piaggi, Pablo

AU - Piccini, GiovanniMaria

AU - Pietropaolo, Adriana

AU - Pietrucci, Fabio

AU - Pipolo, Silvio

AU - Provasi, Davide

AU - Quigley, David

AU - Raiteri, Paolo

AU - Raniolo, Stefano

AU - Rydzewski, Jakub

AU - Salvalaglio, Matteo

AU - Sosso, Gabriele Cesare

AU - Spiwok, Vojtech

AU - Sponer, Jiri

AU - Swenson, David W. H.

AU - Tiwary, Pratyush

AU - Valsson, Omar

AU - Vendruscolo, Michele

AU - Voth, Gregory A.

AU - White, Andrew

PY - 2019

Y1 - 2019

U2 - 10.1038/s41592-019-0506-8

DO - 10.1038/s41592-019-0506-8

M3 - Editorial

C2 - 31363226

VL - 16

SP - 670

EP - 673

JO - Nature Methods

JF - Nature Methods

SN - 1548-7091

IS - 8

ER -

ID: 227335896