Overview of the interactive task in BioCreative V
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Overview of the interactive task in BioCreative V. / Wang, Qinghua; S Abdul, Shabbir; Almeida, Lara; Ananiadou, Sophia; Balderas-Martínez, Yalbi I; Batista-Navarro, Riza; Campos, David; Chilton, Lucy; Chou, Hui-Jou; Contreras, Gabriela; Cooper, Laurel; Dai, Hong-Jie; Ferrell, Barbra; Fluck, Juliane; Gama-Castro, Socorro; George, Nancy; Gkoutos, Georgios; Irin, Afroza K; Jensen, Lars J; Jimenez, Silvia; Jue, Toni R; Keseler, Ingrid; Madan, Sumit; Matos, Sérgio; McQuilton, Peter; Milacic, Marija; Mort, Matthew; Natarajan, Jeyakumar; Pafilis, Evangelos; Pereira, Emiliano; Rao, Shruti; Rinaldi, Fabio; Rothfels, Karen; Salgado, David; Silva, Raquel M; Singh, Onkar; Stefancsik, Raymund; Su, Chu-Hsien; Subramani, Suresh; Tadepally, Hamsa D; Tsaprouni, Loukia; Vasilevsky, Nicole; Wang, Xiaodong; Chatr-Aryamontri, Andrew; Laulederkind, Stanley J F; Matis-Mitchell, Sherri; McEntyre, Johanna; Orchard, Sandra; Pundir, Sangya; Rodriguez-Esteban, Raul; Van Auken, Kimberly; Lu, Zhiyong; Schaeffer, Mary; Wu, Cathy H; Hirschman, Lynette; Arighi, Cecilia N.
In: Database: The Journal of Biological Databases and Curation, Vol. 2016, baw119, 2016.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Overview of the interactive task in BioCreative V
AU - Wang, Qinghua
AU - S Abdul, Shabbir
AU - Almeida, Lara
AU - Ananiadou, Sophia
AU - Balderas-Martínez, Yalbi I
AU - Batista-Navarro, Riza
AU - Campos, David
AU - Chilton, Lucy
AU - Chou, Hui-Jou
AU - Contreras, Gabriela
AU - Cooper, Laurel
AU - Dai, Hong-Jie
AU - Ferrell, Barbra
AU - Fluck, Juliane
AU - Gama-Castro, Socorro
AU - George, Nancy
AU - Gkoutos, Georgios
AU - Irin, Afroza K
AU - Jensen, Lars J
AU - Jimenez, Silvia
AU - Jue, Toni R
AU - Keseler, Ingrid
AU - Madan, Sumit
AU - Matos, Sérgio
AU - McQuilton, Peter
AU - Milacic, Marija
AU - Mort, Matthew
AU - Natarajan, Jeyakumar
AU - Pafilis, Evangelos
AU - Pereira, Emiliano
AU - Rao, Shruti
AU - Rinaldi, Fabio
AU - Rothfels, Karen
AU - Salgado, David
AU - Silva, Raquel M
AU - Singh, Onkar
AU - Stefancsik, Raymund
AU - Su, Chu-Hsien
AU - Subramani, Suresh
AU - Tadepally, Hamsa D
AU - Tsaprouni, Loukia
AU - Vasilevsky, Nicole
AU - Wang, Xiaodong
AU - Chatr-Aryamontri, Andrew
AU - Laulederkind, Stanley J F
AU - Matis-Mitchell, Sherri
AU - McEntyre, Johanna
AU - Orchard, Sandra
AU - Pundir, Sangya
AU - Rodriguez-Esteban, Raul
AU - Van Auken, Kimberly
AU - Lu, Zhiyong
AU - Schaeffer, Mary
AU - Wu, Cathy H
AU - Hirschman, Lynette
AU - Arighi, Cecilia N
N1 - Published by Oxford University Press 2016. This work is written by US Government employees and is in the public domain in the US.
PY - 2016
Y1 - 2016
N2 - Fully automated text mining (TM) systems promote efficient literature searching, retrieval, and review but are not sufficient to produce ready-to-consume curated documents. These systems are not meant to replace biocurators, but instead to assist them in one or more literature curation steps. To do so, the user interface is an important aspect that needs to be considered for tool adoption. The BioCreative Interactive task (IAT) is a track designed for exploring user-system interactions, promoting development of useful TM tools, and providing a communication channel between the biocuration and the TM communities. In BioCreative V, the IAT track followed a format similar to previous interactive tracks, where the utility and usability of TM tools, as well as the generation of use cases, have been the focal points. The proposed curation tasks are user-centric and formally evaluated by biocurators. In BioCreative V IAT, seven TM systems and 43 biocurators participated. Two levels of user participation were offered to broaden curator involvement and obtain more feedback on usability aspects. The full level participation involved training on the system, curation of a set of documents with and without TM assistance, tracking of time-on-task, and completion of a user survey. The partial level participation was designed to focus on usability aspects of the interface and not the performance per se In this case, biocurators navigated the system by performing pre-designed tasks and then were asked whether they were able to achieve the task and the level of difficulty in completing the task. In this manuscript, we describe the development of the interactive task, from planning to execution and discuss major findings for the systems tested.Database URL: http://www.biocreative.org.
AB - Fully automated text mining (TM) systems promote efficient literature searching, retrieval, and review but are not sufficient to produce ready-to-consume curated documents. These systems are not meant to replace biocurators, but instead to assist them in one or more literature curation steps. To do so, the user interface is an important aspect that needs to be considered for tool adoption. The BioCreative Interactive task (IAT) is a track designed for exploring user-system interactions, promoting development of useful TM tools, and providing a communication channel between the biocuration and the TM communities. In BioCreative V, the IAT track followed a format similar to previous interactive tracks, where the utility and usability of TM tools, as well as the generation of use cases, have been the focal points. The proposed curation tasks are user-centric and formally evaluated by biocurators. In BioCreative V IAT, seven TM systems and 43 biocurators participated. Two levels of user participation were offered to broaden curator involvement and obtain more feedback on usability aspects. The full level participation involved training on the system, curation of a set of documents with and without TM assistance, tracking of time-on-task, and completion of a user survey. The partial level participation was designed to focus on usability aspects of the interface and not the performance per se In this case, biocurators navigated the system by performing pre-designed tasks and then were asked whether they were able to achieve the task and the level of difficulty in completing the task. In this manuscript, we describe the development of the interactive task, from planning to execution and discuss major findings for the systems tested.Database URL: http://www.biocreative.org.
KW - Journal Article
U2 - 10.1093/database/baw119
DO - 10.1093/database/baw119
M3 - Journal article
C2 - 27589961
VL - 2016
JO - Database : the journal of biological databases and curation
JF - Database : the journal of biological databases and curation
SN - 1758-0463
M1 - baw119
ER -
ID: 166507165