Literature mining for the biologist: from information retrieval to biological discovery
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Literature mining for the biologist : from information retrieval to biological discovery. / Jensen, Lars Juhl; Saric, Jasmin; Bork, Peer.
In: Nature Reviews. Genetics, Vol. 7, No. 2, 2006, p. 119-29.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Literature mining for the biologist
T2 - from information retrieval to biological discovery
AU - Jensen, Lars Juhl
AU - Saric, Jasmin
AU - Bork, Peer
PY - 2006
Y1 - 2006
N2 - For the average biologist, hands-on literature mining currently means a keyword search in PubMed. However, methods for extracting biomedical facts from the scientific literature have improved considerably, and the associated tools will probably soon be used in many laboratories to automatically annotate and analyse the growing number of system-wide experimental data sets. Owing to the increasing body of text and the open-access policies of many journals, literature mining is also becoming useful for both hypothesis generation and biological discovery. However, the latter will require the integration of literature and high-throughput data, which should encourage close collaborations between biologists and computational linguists.
AB - For the average biologist, hands-on literature mining currently means a keyword search in PubMed. However, methods for extracting biomedical facts from the scientific literature have improved considerably, and the associated tools will probably soon be used in many laboratories to automatically annotate and analyse the growing number of system-wide experimental data sets. Owing to the increasing body of text and the open-access policies of many journals, literature mining is also becoming useful for both hypothesis generation and biological discovery. However, the latter will require the integration of literature and high-throughput data, which should encourage close collaborations between biologists and computational linguists.
U2 - 10.1038/nrg1768
DO - 10.1038/nrg1768
M3 - Journal article
C2 - 16418747
VL - 7
SP - 119
EP - 129
JO - Nature Reviews. Genetics
JF - Nature Reviews. Genetics
SN - 1471-0056
IS - 2
ER -
ID: 40740501