Classification of renal tumour using convolutional neural networks to detect oncocytoma

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Classification of renal tumour using convolutional neural networks to detect oncocytoma. / Pedersen, Mikkel; Andersen, Michael Brun; Christiansen, Henning; Azawi, Nessn H.

In: European Journal of Radiology, Vol. 133, 109343, 2020.

Research output: Contribution to journalJournal articleResearchpeer-review

Harvard

Pedersen, M, Andersen, MB, Christiansen, H & Azawi, NH 2020, 'Classification of renal tumour using convolutional neural networks to detect oncocytoma', European Journal of Radiology, vol. 133, 109343. https://doi.org/10.1016/j.ejrad.2020.109343

APA

Pedersen, M., Andersen, M. B., Christiansen, H., & Azawi, N. H. (2020). Classification of renal tumour using convolutional neural networks to detect oncocytoma. European Journal of Radiology, 133, [109343]. https://doi.org/10.1016/j.ejrad.2020.109343

Vancouver

Pedersen M, Andersen MB, Christiansen H, Azawi NH. Classification of renal tumour using convolutional neural networks to detect oncocytoma. European Journal of Radiology. 2020;133. 109343. https://doi.org/10.1016/j.ejrad.2020.109343

Author

Pedersen, Mikkel ; Andersen, Michael Brun ; Christiansen, Henning ; Azawi, Nessn H. / Classification of renal tumour using convolutional neural networks to detect oncocytoma. In: European Journal of Radiology. 2020 ; Vol. 133.

Bibtex

@article{85ab6fe0ae6a4f7b8af470d2176abb98,
title = "Classification of renal tumour using convolutional neural networks to detect oncocytoma",
abstract = "Purpose: To investigate the ability of convolutional neural networks (CNNs) to facilitate differentiation of oncocytoma from renal cell carcinoma (RCC) using non-invasive imaging technology. Methods: Data were collected from 369 patients between January 2015 and September 2018. True labelling of scans as benign or malignant was determined by subsequent histological findings post-surgery or ultrasound-guided percutaneous biopsy. The data included 20,000 2D CT images. Data were randomly divided into sets for training (70 %), validation (10 %) and independent testing (20 %, DataTest_1). A small dataset (DataTest_2) was used for additional validation of the training model. Data were divided into sets at the patient level, rather than by individual image. A modified version of the ResNet50V2 was used. Accuracy of detecting benign or malignant renal mass was evaluated by a 51 % majority vote of individual image classifications to determine the classification for each patient. Results: Test results from DataTest_1 indicate an area under the curve (AUC) of 0.973 with 93.3 % accuracy and 93.5 % specificity. Results from DataTest_2 indicate an AUC of 0.946 with 90.0 % accuracy and 98.0 % specificity when evaluation is performed image by image. There is no case in which multiple false negative images originate from the same patient. When evaluated with 51 % majority of scans for each patient, the accuracy rises to 100 % and the incidence of false negatives falls to zero. Conclusion: CNNs and deep learning technology can classify renal tumour masses as oncocytoma with high accuracy. This diagnostic method could prevent overtreatment for patients with renal masses.",
keywords = "Deep learning, Machine learning, Oncocytoma, Renal cell carcinoma",
author = "Mikkel Pedersen and Andersen, {Michael Brun} and Henning Christiansen and Azawi, {Nessn H.}",
year = "2020",
doi = "10.1016/j.ejrad.2020.109343",
language = "English",
volume = "133",
journal = "European Journal of Radiology",
issn = "0720-048X",
publisher = "Elsevier Ireland Ltd",

}

RIS

TY - JOUR

T1 - Classification of renal tumour using convolutional neural networks to detect oncocytoma

AU - Pedersen, Mikkel

AU - Andersen, Michael Brun

AU - Christiansen, Henning

AU - Azawi, Nessn H.

PY - 2020

Y1 - 2020

N2 - Purpose: To investigate the ability of convolutional neural networks (CNNs) to facilitate differentiation of oncocytoma from renal cell carcinoma (RCC) using non-invasive imaging technology. Methods: Data were collected from 369 patients between January 2015 and September 2018. True labelling of scans as benign or malignant was determined by subsequent histological findings post-surgery or ultrasound-guided percutaneous biopsy. The data included 20,000 2D CT images. Data were randomly divided into sets for training (70 %), validation (10 %) and independent testing (20 %, DataTest_1). A small dataset (DataTest_2) was used for additional validation of the training model. Data were divided into sets at the patient level, rather than by individual image. A modified version of the ResNet50V2 was used. Accuracy of detecting benign or malignant renal mass was evaluated by a 51 % majority vote of individual image classifications to determine the classification for each patient. Results: Test results from DataTest_1 indicate an area under the curve (AUC) of 0.973 with 93.3 % accuracy and 93.5 % specificity. Results from DataTest_2 indicate an AUC of 0.946 with 90.0 % accuracy and 98.0 % specificity when evaluation is performed image by image. There is no case in which multiple false negative images originate from the same patient. When evaluated with 51 % majority of scans for each patient, the accuracy rises to 100 % and the incidence of false negatives falls to zero. Conclusion: CNNs and deep learning technology can classify renal tumour masses as oncocytoma with high accuracy. This diagnostic method could prevent overtreatment for patients with renal masses.

AB - Purpose: To investigate the ability of convolutional neural networks (CNNs) to facilitate differentiation of oncocytoma from renal cell carcinoma (RCC) using non-invasive imaging technology. Methods: Data were collected from 369 patients between January 2015 and September 2018. True labelling of scans as benign or malignant was determined by subsequent histological findings post-surgery or ultrasound-guided percutaneous biopsy. The data included 20,000 2D CT images. Data were randomly divided into sets for training (70 %), validation (10 %) and independent testing (20 %, DataTest_1). A small dataset (DataTest_2) was used for additional validation of the training model. Data were divided into sets at the patient level, rather than by individual image. A modified version of the ResNet50V2 was used. Accuracy of detecting benign or malignant renal mass was evaluated by a 51 % majority vote of individual image classifications to determine the classification for each patient. Results: Test results from DataTest_1 indicate an area under the curve (AUC) of 0.973 with 93.3 % accuracy and 93.5 % specificity. Results from DataTest_2 indicate an AUC of 0.946 with 90.0 % accuracy and 98.0 % specificity when evaluation is performed image by image. There is no case in which multiple false negative images originate from the same patient. When evaluated with 51 % majority of scans for each patient, the accuracy rises to 100 % and the incidence of false negatives falls to zero. Conclusion: CNNs and deep learning technology can classify renal tumour masses as oncocytoma with high accuracy. This diagnostic method could prevent overtreatment for patients with renal masses.

KW - Deep learning

KW - Machine learning

KW - Oncocytoma

KW - Renal cell carcinoma

U2 - 10.1016/j.ejrad.2020.109343

DO - 10.1016/j.ejrad.2020.109343

M3 - Journal article

C2 - 33120238

AN - SCOPUS:85094622603

VL - 133

JO - European Journal of Radiology

JF - European Journal of Radiology

SN - 0720-048X

M1 - 109343

ER -

ID: 251183536