Thomas Wim Hamelryck

Thomas Wim Hamelryck

Associate Professor


  1. 2020
  2. Published

    A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community) [version 1; peer review: 1 approved, 3 approved with reservations]

    Orengo, C., Velankar, S., Wodak, S., Zoete, V., Bonvin, A. M. J. J., Elofsson, A., Feenstra, K. A., Gerloff, D. L., Hamelryck, Thomas Wim, Hancock, J. M., Helmer-Citterich, M., Hospital, A., Orozco, M., Perrakis, A., Rarey, M., Soares, C., Sussman, J. L., Thornton, J. M., Tuffery, P., Tusnady, G., Wierenga, R., Salminen, T. & Schneider, B., 2020, In : F1000Research. 9, 27 p., 278.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    GISA: using Gauss Integrals to identify rare conformations in protein structures

    Grønbæk, C., Hamelryck, Thomas Wim & Røgen, P., 2020, In : PeerJ. 8, 16 p., e9159.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. 2019
  5. Published

    A Probabilistic Programming Approach to Protein Structure Superposition

    Sanz Moreta, Lys, Al-Sibahi, Ahmad Salim, Theobald, D., Bullock, W., Rommes, B. N., Manoukian, Andreas & Hamelryck, Thomas Wim, 2019, 2019 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2019. Baruzzo, G., Daberdaku, S., Di Camillo, B., Furini, S., Giordano, E. D. & Nicosia, G. (eds.). IEEE, 5 p. 8791469

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  6. Published

    Langevin diffusions on the torus: estimation and applications

    García-Portugués, E., Sørensen, Michael, Mardia, K. V. & Hamelryck, Thomas Wim, 2019, In : Statistics and Computing. 29, 1, p. 1-22 22 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. 2018
  8. Published

    MyPMFs: a simple tool for creating statistical potentials to assess protein structural models

    Postic, G., Hamelryck, Thomas Wim, Chomilier, J. & Stratmann, D., 2018, In : Biochimie. 151, p. 37-41 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published
  10. Published

    Toroidal Diffusions and Protein Structure Evolution

    Garcia Portugues, E., Golden, M., Sørensen, Michael, Mardia, K. V., Hamelryck, Thomas Wim & Hein, J., 2018, Applied Directional Statistics: Modern Methods and Case Studies. Ley, C. & Verdebout, H. (eds.). CRC Press, 34 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  11. 2017
  12. Published

    A Generative Angular Model of Protein Structure Evolution

    Golden, M., Garcia-Portugues, E., Sørensen, Michael, Mardia, K. V., Hamelryck, Thomas Wim & Hein, J., Aug 2017, In : Molecular Biology and Evolution. 34, 8, p. 2085-2100

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. 2016
  14. Published

    Bayesian inference of protein ensembles from SAXS data

    Antonov, L. D., Olsson, S., Boomsma, Wouter Krogh & Hamelryck, Thomas Wim, 2016, In : Physical Chemistry Chemical Physics. 18, 8, p. 5832-5838 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Computational redesign of thioredoxin is hypersensitive towards minor conformational changes in the backbone template

    Johansson, Kristoffer Enøe, Johansen, Nicolai Tidemand, Christensen, S., Horowitz, S., Bardwell, J. C. A., Olsen, Johan Gotthardt, Willemoës, Martin, Lindorff-Larsen, Kresten, Ferkinghoff-Borg, J., Hamelryck, Thomas Wim & Winther, Jakob R., 2016, In : Journal of Molecular Biology. 428, 21, p. 4361-4377 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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