Finn Cilius Nielsen

Finn Cilius Nielsen

Clinical Professor

Member of:

  • Clinical Biochemistry


Publication year:
All
1 - 25 out of 247Page size: 25
  1. 2024
  2. Published

    Molecular subtyping improves breast cancer diagnosis in the Copenhagen Breast Cancer Genomics Study

    Berg, T., Jensen, M. B., Celik, A., Talman, M. L., Misiakou, M. A., Knoop, A. S., Nielsen, Finn Cilius, Ejlertsen, Bent Laursen & Rossing, Caroline Maria, 2024, In: JCI insight. 9, 7, 13 p., e178114.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 2023
  4. Published

    Multigene profiles to guide the use of neoadjuvant chemotherapy for breast cancer: a Copenhagen Breast Cancer Genomics Study

    Jensen, M., Pedersen, C. B., Misiakou, M., Talman, M. L. M., Gibson, L., Tange, U. B., Kledal, H., Vejborg, I., Kroman, Niels Thorndahl, Nielsen, Finn Cilius, Ejlertsen, Bent Laursen & Rossing, M., 2023, In: npj Breast Cancer. 9, 8 p., 47.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Neoepitope load, T cell signatures and PD-L2 as combined biomarker strategy for response to checkpoint inhibition immunotherapy

    Borch, A., Bjerregaard, A. M., Araujo Barbosa de Lima, V., Østrup, O., Yde, C. W., Eklund, A. C., Mau-Sørensen, M., Barra, C., Svane, Inge Marie, Nielsen, Finn Cilius, Funt, S. A., Lassen, Ulrik Niels & Hadrup, S. R., 2023, In: Frontiers in Genetics. 14, 13 p., 1058605.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    New pathogenic germline variants identified in mesothelioma

    Belcaid, L., Bertelsen, B., Wadt, Karin Anna Wallentin, Tuxen, I., Spanggaard, I., Højgaard, M., Sørensen, Jens Benn, Ravn, J., Lassen, Ulrik Niels, Nielsen, Finn Cilius, Rohrberg, K. & Westmose Yde, C., 2023, In: Lung Cancer. 179, 8 p., 107172.

    Research output: Contribution to journal › Review › Research › peer-review

  7. Published

    Ovarian cancer pathology characteristics as predictors of variant pathogenicity in BRCA1 and BRCA2

    AOCS Group, A. G., CZECANCA Consortium, C. C., The Consortium of Investigators of Modifiers of BRCA1/2, T. C. O. I. O. M. O. B., Evidence-based Network for the Interpretation of Germline Mutant Alleles Consortium, E. N. F. T. I. O. G. M. A. C., HEBON Investigators, H. I. & GEMO Study Collaborators, G. S. C., 2023, In: British Journal of Cancer. 128, 12, p. 2283-2294 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    The Incidence, Survival, and HPV Impact of Second Primary Cancer following Primary Oropharyngeal Squamous Cell Carcinoma: A 20-Year Retrospective and Population-Based Study

    Andersen, L., Jakobsen, K. K., Carlander, A. L. F., Garset-Zamani, M., Friborg, Jeppe Tang, Kiss, K., Marvig, R. L., Olsen, C., Nielsen, Finn Cilius, Andersen, E., Grønhøj, Christian & von Buchwald, Christian, 2023, In: Viruses. 15, 1, 34.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. 2022
  10. Published

    Intestinal metaplasia is a precursor lesion for sinonasal intestinal-type adenocarcinoma: genomic investigation of a case proving this hypothesis

    Sjöstedt, S., Schmidt, A. Y., Vieira, Filipe Garrett, Woller, N. C., Nielsen, Finn Cilius & von Buchwald, Christian, Jan 2022, In: APMIS. 130, 1, p. 53-56 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  11. Published

    A catalog of curated breast cancer genes

    Bose, M., Benada, Jan, Thatte, Jayashree Vijay, Kinalis, S., Ejlertsen, Bent Laursen, Nielsen, Finn Cilius, Sørensen, Claus Storgaard & Rossing, Caroline Maria, 2022, In: Breast Cancer Research and Treatment. 191, p. 431-441

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Benchmarking full-length transcript single cell mRNA sequencing protocols

    Probst, V., Simonyan, Arman, Pacheco, F., Guo, Yuliu, Nielsen, Finn Cilius & Bagger, F. O., 2022, In: BMC Genomics. 23, 860.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Differences in gene expression despite identical histomorphology in sinonasal intestinal-type adenocarcinoma and metastases from colorectal adenocarcinoma

    Sjöstedt, S., Vieira, Filipe Garrett, Karnov, K., Agander, T. K., Willemoe, G. L., Rohrberg, K. S., Nielsen, Finn Cilius & von Buchwald, Christian, 2022, In: APMIS. 130, 9, p. 551-559

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Extensive genomic analysis in patients with KRAS-mutated solid tumors shows high frequencies of concurrent alterations and potential targets but has limited clinical impact

    Jacobsen, I. C., Spanggaard, I., Højgaard, M., Belcaid, L., Qvortrup, Camilla, Yde, C. W., Schmidt, A. Y., Nielsen, Finn Cilius, Willemoe, G. L., Dam, M. S., Lassen, Ulrik Niels & Staal Rohrberg, K., 2022, In: Acta Oncologica. 61, 12, p. 1499-1506 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Impact of specific high-risk human papillomavirus genotypes on survival in oropharyngeal cancer

    Garset-Zamani, M., Carlander, A. F., Jakobsen, K. K., Friborg, Jeppe Tang, Kiss, K., Marvig, R. L., Olsen, C., Nielsen, Finn Cilius, Andersen, E., Grønhøj, Christian & von Buchwald, Christian, 2022, In: International Journal of Cancer. 150, 7, p. 1174-1183

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Interpretable autoencoders trained on single cell sequencing data can transfer directly to data from unseen tissues

    Walbech, J. S., Kinalis, S., Winther, Ole, Nielsen, Finn Cilius & Bagger, F. O., 2022, In: Cells. 11, 12 p., 85.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    MicroRNA-9-3p: a novel predictor of neurological outcome after cardiac arrest

    Beske, R. P., Bache, S., Meyer, M. A. S., Kjærgaard, Jesper, Bro-Jeppesen, J., Obling, L., Olsen, M. H., Rossing, Caroline Maria, Nielsen, Finn Cilius, Møller, Kirsten, Nielsen, N. & Hassager, Christian, 2022, In: European Heart Journal: Acute Cardiovascular Care. 11, 8, p. 609-616 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Personalized circulating tumor DNA in patients with hepatocellular carcinoma: a pilot study

    Pommergaard, Hans-Christian L, Yde, C. W., Ahlborn, L. B., Andersen, C. L., Henriksen, T., Hasselby, Jane Preuss, Rostved, A. A., Sorensen, C. L., Rohrberg, K. S., Nielsen, Finn Cilius & Rasmussen, Anne, 2022, In: Molecular Biology Reports. 49, 2, p. 1609-1616 8 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  19. Published

    Polygenic risk modeling for prediction of epithelial ovarian cancer risk

    Dareng, E. O., Tyrer, J. P., Barnes, D. R., Jones, M. R., Yang, X., Aben, K. K. H., Adank, M. A., Agata, S., Andrulis, I. L., Anton-Culver, H., Antonenkova, N. N., Aravantinos, G., Arun, B. K., Augustinsson, A., Balmaña, J., Bandera, E. V., Barkardottir, R. B., Barrowdale, D., Beckmann, M. W., Beeghly-Fadiel, A. & 39 others, Benitez, J., Bermisheva, M., Bernardini, M. Q., Bjorge, L., Black, A., Bogdanova, N. V., Bonanni, B., Borg, A., Brenton, J. D., Budzilowska, A., Butzow, R., Buys, S. S., Cai, H., Caligo, M. A., Campbell, I., Cannioto, R., Cassingham, H., Chang-Claude, J., Chanock, S. J., Chen, K., Chiew, Y. E., Chung, W. K., Claes, K. B. M., Colonna, S., Hansen, Thomas van Overeem, Høgdall, Estrid Vilma Solyom, Høgdall, Claus Kim, Jensen, A., Kjær, Susanne Krüger, Nielsen, Finn Cilius, GEMO Study Collaborators, G. S. C., GC-HBOC Study Collaborators, G. S. C., EMBRACE Collaborators, E. C., OPAL Study Group, O. S. G., AOCS Group, A. G., kConFab Investigators, K. I., HEBON Investigators, H. I., OCAC Consortium, O. C. & CIMBA Consortium, C. C., 2022, In: European journal of human genetics : EJHG. 30, 3, p. 349-362 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Targeting the tumor mutanome for personalized vaccination in a TMB low non-small cell lung cancer

    McCann, K., Von Witzleben, A., Thomas, J., Wang, C., Wood, O., Singh, D., Boukas, K., Bendjama, K., Silvestre, N., Nielsen, Finn Cilius, Thomas, G., Sanchez-Elsner, T., Greenbaum, J., Schoenberger, S., Peters, B., Vijayanand, P., Savelyeva, N. & Ottensmeier, C., 2022, In: Journal for ImmunoTherapy of Cancer. 10, 3, 14 p., e003821.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Tumor mutational burden and purity adjustment before and after treatment with temozolomide in 27 paired samples of glioblastoma: a prospective study

    Nørøxe, D. S., Flynn, A., Yde, C. W., Østrup, O., Nielsen, Finn Cilius, Skjøth, Jane, Brennum, J., Hamerlik, P., Weischenfeldt, Joachim Lütken, Skovgaard Poulsen, H. & Lassen, Ulrik Niels, 2022, In: Molecular Oncology. 16, 1, p. 206-218

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. 2021
  23. Published

    A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers

    GEMO Study Collaborators, G. S. C., EMBRACE Collaborators, E. C., kConFab Investigators, K. I., HEBON Investigators, H. I. & ABCTB Investigators, A. I., Dec 2021, In: Nature Communications. 12, 1, 22 p., 1078.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Clinical implications of intrinsic molecular subtypes of breast cancer for sentinel node status

    Rossing, M., Pedersen, C. B., Tvedskov, Tove Filtenborg, Vejborg, I., Talman, M. L., Olsen, L. R., Kroman, Niels Thorndahl, Nielsen, Finn Cilius, Jensen, M. B. & Ejlertsen, Bent Laursen, Dec 2021, In: Scientific Reports. 11, 1, 12 p., 2259.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Major driver mutations are shared between sinonasal intestinal-type adenocarcinoma and the morphologically identical colorectal adenocarcinoma

    Sjöstedt, S., Schmidt, A. Y., Vieira, Filipe Garrett, Willemoe, G. L., Agander, T. K., Olsen, C., Nielsen, Finn Cilius & von Buchwald, Christian, Apr 2021, In: Journal of Cancer Research and Clinical Oncology. 147, 4, p. 1019-1027 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Achromobacter spp. genetic adaptation in cystic fibrosis

    Gabrielaite, M., Nielsen, Finn Cilius, Johansen, Helle Krogh & Marvig, R. L., 2021, In: Microbial genomics. 7, 7, 13 p., 000582.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

    Gabrielaite, M., Torp, M., Rasmussen, M., Andreu-Sánchez, S., Vieira, Filipe Garrett, Pedersen, C., Kinalis, S., Madsen, M., Yde, C., Rønn, O. L., Marvig, R., Østrup, O., Rossing, Caroline Maria, Nielsen, Finn Cilius, Winther, Ole & Bagger, F. O., 2021, bioRxiv, 29 p.

    Research output: Working paper › Preprint › Research

  28. Published

    A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

    Gabrielaite, M., Torp, M. H., Rasmussen, Malthe Sebro, Andreu-Sánchez, S., Vieira, Filipe Garrett, Pedersen, C. B., Kinalis, S., Madsen, M. B., Kodama, M., Demircan, G. S., Simonyan, A., Yde, C. W., Olsen, L. R., Marvig, R. L., Østrup, O., Rossing, Caroline Maria, Nielsen, Finn Cilius, Winther, Ole & Bagger, F. O., 2021, In: Cancers. 13, 24, 6283.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    A simple, safe and sensitive method for SARS-CoV-2 inactivation and RNA extraction for RT-qPCR

    Kalnina, L., Mateu-Regué, À., Oerum, S., Hald, A., Gerstoft, Jan, Oerum, H., Nielsen, Finn Cilius & Iversen, A. K. N., 2021, In: APMIS. 129, 7, p. 393-400 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 6797