Albin Gustav Sandelin
Professor
Computational and RNA Biology
Ole Maaløes Vej 5
2200 København N.
- 2012
- Published
GMD: measuring the distance between histograms with applications on high-throughput sequencing reads
Zhao, X. & Sandelin, Albin Gustav, 2012, In: Bioinformatics. 28, 8, p. 1164-1165 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interaction of antidepressants with the serotonin and norepinephrine transporters: mutational studies of the S1 substrate binding pocket
Sørensen, L., Andersen, J., Thomsen, M., Hansen, S. M. R., Zhao, X., Sandelin, Albin Gustav, Strømgaard, Kristian & Kristensen, Anders Skov, 2012, In: The Journal of Biological Chemistry. 287, 52, p. 43694-43707 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interaction of antidepressants with the serotonin and norepinephrine transporters: mutational studies of the S1 substrate binding pocket
Sørensen, L., Andersen, J., Thomsen, M., Hansen, S. M. R., Zhao, X., Sandelin, Albin Gustav, Strømgaard, Kristian & Kristensen, Anders Skov, 2012, In: Journal of Biological Chemistry. 287, p. 43694-43707 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metazoan promoters: emerging characteristics and insights into transcriptional regulation
Lenhard, B., Sandelin, Albin Gustav & Carninci, P., 2012, In: Nature Reviews. Genetics. 13, 4, p. 233-245 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
Pauli, A., Valen, E., Lin, M. F., Garber, M., Vastenhouw, N. L., Levin, J. Z., Fan, L., Sandelin, Albin Gustav, Rinn, J. L., Regev, A. & Schier, A. F., 2012, In: Genome Research. 22, p. 577-591 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2011
- Published
PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters
Preker, P., Almvig, K., Christensen, M. S., Valen, E., Mapendano, C. K., Sandelin, Albin Gustav & Jensen, T. H., 19 May 2011, In: Nucleic Acids Research.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes
Valen, E., Preker, P., Andersen, P. R., Zhao, X., Chen, Y., Ender, C., Dueck, A., Meister, G., Sandelin, Albin Gustav & Jensen, T. H., 2011, In: Nature Structural and Molecular Biology. 18, 9, p. 1075–1082 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cross species comparison of C/EBPa and PPAR¿ profiles in mouse and human adipocytes reveals interdependent retention of binding sites
Schmidt, S. F., Jørgensen, M., Chen, Y., Nielsen, R., Sandelin, Albin Gustav & Mandrup, S., 2011, In: BMC Genomics. 12, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and chromatin signals underlying transcription start-site selection
Valen, E. & Sandelin, Albin Gustav, 2011, In: Trends in Genetics. 27, 11, p. 475-485 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data
Chen, Y., Jørgensen, M., Kolde, R., Zhao, X., Parker, B., Valen, E., Wen, J. & Sandelin, Albin Gustav, 2011, In: BMC Genomics. 12, 1, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Systematic clustering of transcription start site landscapes
Zhao, X., Valen, E., Parker, B. J. & Sandelin, Albin Gustav, 2011, In: P L o S One. 6, 8, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Value of Example Solutions in Pharmacy Education: The role of seniority and gender.
Sandelin, Albin Gustav, Hansen, H. R., Baldursdóttir, S. G., Kristensen, Anders Skov, Bak, Lasse Kristoffer, Christiansen, Frederik Voetmann & Selhuber-Unkel, C. J. M., 2011, In: Pharmacy Education. 11, 1, p. 32-37 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2010
- Published
A conceptual framework for the identification of candidate drugs and drug targets in acute promyelocytic leukemia
Marstrand, T. T., Borup, R., Willer, A., Borregaard, N., Sandelin, Albin Gustav, Porse, Bo Torben & Theilgaard-Mønch, Kim, Jul 2010, In: Leukemia. 24, 7, p. 1265-75 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
3-methylcholanthrene induces differential recruitment of aryl hydrocarbon receptor to human promoters
Pansoy, A., Ahmed, S., Valen, E., Sandelin, Albin Gustav & Matthews, J., 2010, In: Toxicological Sciences. 117, 1, p. 90-100 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gene expression analysis of the emergence of epileptiform activity after focal injection of kainic acid into mouse hippocampus
Motti, D., Le Duigou, C., Eugène, E., Chemaly, N., Wittner, L., Lazarevic, D., Krmac, H., Marstrand, T., Valen, E., Sanges, R., Stupka, E., Sandelin, Albin Gustav, Cherubini, E., Gustincich, S. & Miles, R., 2010, In: European Journal of Neuroscience. 32, 8, p. 1364-79 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multivariate Hawkes process models of the occurrence of regulatory elements
Carstensen, L., Sandelin, Albin Gustav, Winther, Ole & Hansen, Niels Richard, 2010, In: BMC Bioinformatics. 11, p. 456Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury
Ryge, J., Winther, Ole, Wienecke, Jacob, Sandelin, Albin Gustav, Westerdahl, A., Hultborn, Hans & Kiehn, O., 2010, In: BMC Genomics. 11, 1, p. 365 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2009
- Published
Dioxin increases the interaction between aryl hydrocarbon receptor and estrogen receptor alpha at human promoters
Ahmed, S., Valen, E., Sandelin, Albin Gustav & Matthews, J., 2009, In: Toxicological Sciences. 111, 2, p. 254-266Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Discovery of regulatory elements is improved by a discriminatory approach
Valen, E., Sandelin, Albin Gustav, Winther, Ole & Krogh, Anders, 2009, In: PLoS Computational Biology. 5, 11, p. e1000562Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
Valen, E., Pascarella, G., Chalk, A., Maeda, N., Kojima, M., Kawazu, C., Murata, M., Nishiyori, H., Lazarevic, D., Motti, D., Marstrand, T. T., Tang, M-H. E., Zhao, X., Krogh, A., Winther, O., Arakawa, T., Kawai, J., Wells, C., Daub, C., Harbers, M. & 4 others, , 2009, In: Genome Research. 19, 2, p. 255-65 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
Portales-Casamar, E., Thongjuea, S., Kwon, A. T., Arenillas, D., Zhao, X., Valen, E., Yusuf, D., Lenhard, B., Wasserman, W. W. & Sandelin, Albin Gustav, 2009, In: Nucleic Acids Research.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Suzuki, H., Forrest, A. R. R., van Nimwegen, E., Daub, C. O., Balwierz, P. J., Irvine, K. M., Lassmann, T., Ravasi, T., Hasegawa, Y., de Hoon, M. J. L., Katayama, S., Schroder, K., Carninci, P., Tomaru, Y., Kanamori-Katayama, M., Kubosaki, A., Akalin, A., Ando, Y., Arner, E., Asada, M. & 31 others, , 2009, In: Nature Genetics. 41, 5, p. 553-62 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2008
- Published
Hidden layers of human small RNAs
Kawaji, H., Nakamura, M., Takahashi, Y., Sandelin, Albin Gustav, Katayama, S., Fukuda, S., Daub, C. O., Kai, C., Kawai, J., Yasuda, J., Carninci, P. & Hayashizaki, Y., 2008, In: BMC Genomics. 9, p. 157Research output: Contribution to journal › Journal article › Research › peer-review
- Published
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.
Bryne, J. C., Valen, E., Tang, M. E., Marstrand, T., Winther, Ole, da Piedade, I., Krogh, Anders, Lenhard, B. & Sandelin, Albin Gustav, 2008, In: Nucleic Acids Research. 36, Database issue, p. D102-6Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modeling promoter grammars with evolving hidden Markov models
Won, K., Sandelin, Albin Gustav, Marstrand, T. T. & Krogh, Anders, 2008, In: Bioinformatics. 24, 15, p. 1669-75 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 5007
Most downloads
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3494
downloads
spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
3341
downloads
Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
2988
downloads
Multivariate Hawkes process models of the occurrence of regulatory elements
Research output: Contribution to journal › Journal article › Research › peer-review
Published