Jakob Stokholm
Associate Professor
Food Microbiology, Gut Health, and Fermentation
Rolighedsvej 26
1958 Frederiksberg C
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Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages
Mathieu, A., Dion, M., Deng, Ling, Tremblay, D., Moncaut, E., Shah, S. A., Stokholm, Jakob, Krogfelt, K. A., Schjørring, S., Bisgaard, H., Nielsen, Dennis Sandris, Moineau, S. & Petit, M., 2020, In: Nature Communications. 11, 12 p., 378.Research output: Contribution to journal › Journal article › Research › peer-review
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Vaginal seeding or vaginal microbial transfer from the mother to the caesarean-born neonate: a commentary regarding clinical management
Haahr, T., Glavind, J., Axelsson, P., Bistrup Fischer, M., Bjurström, J., Andrésdóttir, G., Teilmann-Jørgensen, D., Bonde, U., Olsén Sørensen, N., Møller, M., Fuglsang, J., Ovesen, P. G., Petersen, J. P., Stokholm, Jakob & Clausen, Tine Dalsgaard, Apr 2018, In: BJOG: An International Journal of Obstetrics and Gynaecology. 125, 5, p. 533-536Research output: Contribution to journal › Journal article › Research › peer-review
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Vaginal dysbiosis in pregnancy associates with risk of emergency caesarean section: a prospective cohort study
Haahr, T., Clausen, Tine Dalsgaard, Thorsen, J., Rasmussen, Morten Arendt, Mortensen, M. S., Lehtimäki, J., Shah, S. A., Hjelmsø, M. H., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Vestergaard, G., Jacobsson, B., Larsson, P., Brix, S., Sørensen, Søren Johannes, Bisgaard, H. & Stokholm, Jakob, 2022, In: Clinical Microbiology and Infection. 28, 4, p. Pages 588-595Research output: Contribution to journal › Journal article › Research › peer-review
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Urbanized microbiota in infants, immune constitution and later risk of atopic diseases
Lehtimäki, J., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Mortensen, M. S., Trivedi, Urvish, Vestergaard, G., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Bisgaard, H. & Stokholm, Jakob, 2021, In: Journal of Allergy and Clinical Immunology. 148, 1, p. 234-243 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Time trends of chronic immune diseases by year of birth in Danish registries
Sevelsted, A., Chawes, Bo Lund Krogsgaard, Stokholm, Jakob, Bønnelykke, Klaus & Bisgaard, H., 2021, In: European Journal of Epidemiology. 36, 11, p. 1179-1185 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The role of the 17q21 genotype in the prevention of early childhood asthma and recurrent wheeze by vitamin D
Kelly, R. S., Chawes, Bo Lund Krogsgaard, Guo, F., Zhang, L., Blighe, K., Litonjua, A. A., Raby, B. A., Levy, B. D., Rago, D., Stokholm, Jakob, Bønnelykke, Klaus, Bisgaard, H., Zhou, X., Lasky-Su, J. A. & Weiss, S. T., 2019, In: The European Respiratory Journal. 54, 4, 11 p., 1900761.Research output: Contribution to journal › Journal article › Research › peer-review
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The power and potential of BIOMAP to elucidate host-microbiome interplay in skin inflammatory diseases
Alenius, H., Sinkko, H., Moitinho-Silva, L., Rodriguez, E., Broderick, C., Alexander, H., Reiger, M., Hjelmsø, M. H., Fyhrquist, N., Olah, P., Bryce, P., Smith, C., Koning, F., Eyerich, K., Greco, D., van den Bogaard, E. H., Neumann, A. U., Traidl-Hoffmann, C., Homey, B., Flohr, C. & 3 others, , 2021, In: Experimental Dermatology. 30, 10, p. 1517-1531Research output: Contribution to journal › Review › Research › peer-review
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The maternal gut microbiome during pregnancy and offspring allergy and asthma
Gao, Y., Nanan, R., Macia, L., Tan, J., Sominsky, L., Quinn, T. P., O'Hely, M., Ponsonby, A., Tang, M. L. K., Collier, F., Strickland, D. H., Dhar, P., Brix, S., Phipps, S., Sly, P. D., Ranganathan, S., Stokholm, Jakob, Kristiansen, Karsten, Gray, L. E. K. & Vuillermin, P., 2021, In: Journal of Allergy and Clinical Immunology. 148, 3, p. 669-678Research output: Contribution to journal › Journal article › Research › peer-review
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The infant gut virome is associated with preschool asthma risk independently of bacteria
Rodríguez, C. L., Shah, S. A., Rasmussen, Morten Arendt, Thorsen, J., Boulund, U., Pedersen, C. T., Castro-Mejía, J. L., Poulsen, Christina Egeø, Poulsen, C. S., Deng, Ling, Larsen, Frej Andreas Nøhr, Widdowson, Michael Lawrence, Zhang, Yichang, Sørensen, Søren Johannes, Moineau, S., Petit, M. A., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Nielsen, Dennis Sandris & Stokholm, Jakob, 2023, In: Nature Medicine. 30, p. 138-148 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition
Li, Xuan Ji, Stokholm, Jakob, Brejnrod, A., Vestergaard, G. A., Russel, J., Trivedi, Urvish, Thorsen, Jonathan Jan Ilve, Gupta, S., Hjelmsø, M. H., Shah, S. A., Rasmussen, Morten Arendt, Bisgaard, H. & Sørensen, Søren Johannes, 2021, In: Cell Host & Microbe. 29, 6, p. 975–987.e4 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The developing hypopharyngeal microbiota in early life
Mortensen, M. S., Brejnrod, A. D., Roggenbuck, M., Abu Al-Soud, W., Balle, C., Krogfelt, K. A., Stokholm, Jakob, Thorsen, Jonathan Jan Ilve, Waage, J. E., Rasmussen, Morten Arendt, Bisgaard, H. & Sørensen, Søren Johannes, 2016, In: Microbiome. 4, 12 p., 70.Research output: Contribution to journal › Journal article › Research › peer-review
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The developing airway and gut microbiota in early life is influenced by age of older siblings
Christensen, E. D., Hjelmsø, M. H., Thorsen, Jonathan Jan Ilve, Shah, S., Redgwell, T., Poulsen, Christina Egeø, Trivedi, Urvish, Russel, J., Gupta, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes, Rasmussen, Morten Arendt, Bisgaard, H. & Stokholm, Jakob, 2022, In: Microbiome. 10, 15 p., 106.Research output: Contribution to journal › Journal article › Research › peer-review
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The airway microbiota of neonates colonized with asthma-associated pathogenic bacteria
Thorsen, Jonathan Jan Ilve, Li, Xuan Ji, Peng, Shuang, Sunde, R. B., Shah, S. A., Bhattacharyya, M., Poulsen, C. S., Poulsen, Christina Egeø, Leal Rodriguez, C., Widdowson, Michael Lawrence, Neumann, A. U., Trivedi, Urvish, Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Nature Communications. 14, 12 p., 6668.Research output: Contribution to journal › Journal article › Research › peer-review
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The Airway Microbiota Modulates Effect of Azithromycin Treatment for Episodes of Recurrent Asthma-like Symptoms in Preschool Children: A Randomized Clinical Trial
Thorsen, Jonathan Jan Ilve, Stokholm, Jakob, Rasmussen, Morten Arendt, Mortensen, M. S., Brejnrod, A. D., Hjelmsø, M., Shah, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes & Bisgaard, H., 2021, In: American Journal of Respiratory and Critical Care Medicine. 204, 2, p. 149-158Research output: Contribution to journal › Journal article › Research › peer-review
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Symptom burden of atopic dermatitis in early childhood assessed from daily monitoring of symptoms and topical steroid use
Ruge, I. F., Thorsteinsdóttir, S., Nørgaard, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Stokholm, Jakob & Bisgaard, H., 2021, In: Journal of the American Academy of Dermatology. 84, 3, p. 725-734 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Supplementation With Fish Oil in Pregnancy Reduces Gastroenteritis in Early Childhood
Horner, David Lyle George, Hjelmsø, M. H., Thorsen, J., Rasmussen, Morten Arendt, Eliasen, A., Vinding, R. K., Schoos, Ann-Marie Malby, Brustad, N., Sunde, R. B., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Stokholm, Jakob & Bisgaard, H., 2023, In: Journal of Infectious Diseases. 227, 3, p. 448–456 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Single and multiple time-point allergic sensitization during childhood and risk of asthma by age 13
Schoos, A. M. M., Jelding-Dannemand, E., Stokholm, Jakob, Bønnelykke, Klaus, Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2019, In: Pediatric Allergy and Immunology. 30, 7, p. 716-723 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Short- and long-term impacts of azithromycin treatment on the gut microbiota in children: a double-blind, randomized, placebo-controlled trial
Wei, S., Mortensen, M. S., Stokholm, Jakob, Brejnrod, A. D., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Trivedi, Urvish, Bisgaard, H. & Sørensen, Søren Johannes, 2018, In: EBioMedicine. 38, p. 265-272Research output: Contribution to journal › Journal article › Research › peer-review
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Sensitivity of multiple breath washout to detect mild-to-moderate asthma in adolescence
Arianto, L., Hallas, H. W., Stokholm, Jakob, Bønnelykke, Klaus, Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2019, In: The Journal of Allergy and Clinical Immunology: In Practice. 7, 6, p. 2052-2054.e5Research output: Contribution to journal › Letter › Research › peer-review
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Season of birth shapes neonatal immune function
Thysen, A. H., Rasmussen, Morten Arendt, Kreiner-Møller, E., Larsen, J. M., Følsgaard, N. V., Bønnelykke, Klaus, Stokholm, Jakob, Bisgaard, H. & Brix, S., 2016, In: Journal of Allergy and Clinical Immunology. 137, 4, p. 1238–1246.e13 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Season of Birth Impacts the Neonatal Nasopharyngeal Microbiota
Schoos, A. M., Kragh, M., Ahrens, P., Kuhn, K. G., Rasmussen, Morten Arendt, Chawes, Bo Lund Krogsgaard, Jensen, J. S., Brix, S., Bisgaard, H. & Stokholm, Jakob, 2020, In: Children. 7, 5, 15 p., 45.Research output: Contribution to journal › Journal article › Research › peer-review
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Safety of High-Dose Vitamin D Supplementation among Children Aged 0 to 6 Years: A Systematic Review and Meta-analysis
Brustad, N., Yousef, S., Stokholm, Jakob, Bønnelykke, Klaus, Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2022, In: JAMA network open. 5, 4, 14 p., E227410.Research output: Contribution to journal › Review › Research › peer-review
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Risk of Asthma from Cesarean Delivery Depends on Membrane Rupture
Sevelsted, A., Stokholm, Jakob & Bisgaard, H., Apr 2016, In: The Journal of Pediatrics. 171, p. 38–42.e4 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Risk Factors and Age-Related Patterns of Asthma-Like Symptoms in Early Childhood
Kyvsgaard, J. N., Chawes, Bo Lund Krogsgaard, Horner, David Lyle George, Hesselberg, L. M., Melgaard, M. E., Jensen, S. K., Schoos, Ann-Marie Malby, Thorsen, Jonathan Jan Ilve, Pedersen, C. E. T., Brustad, N., Bønnelykke, Klaus, Bisgaard, H. & Stokholm, Jakob, 2023, In: Journal of Allergy and Clinical Immunology: In Practice. 11, 6, p. 1773-1784.e10 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Reduced diversity of the intestinal microbiota during infancy is associated with increased risk of allergic disease at school age
Bisgaard, H., Li, N., Bonnelykke, K., Chawes, B. L. K., Skov, T. H., Paludan-Müller, G., Stokholm, Jakob, Smith, B. & Krogfelt, K. A., 2011, In: Journal of Allergy and Clinical Immunology. 128, 3, p. 646-652.e5 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 252282561
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Maturation of the gut microbiome and risk of asthma in childhood
Research output: Contribution to journal › Journal article › Research › peer-review
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392
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Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
Research output: Contribution to journal › Journal article › Research › peer-review
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277
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Short- and long-term impacts of azithromycin treatment on the gut microbiota in children: a double-blind, randomized, placebo-controlled trial
Research output: Contribution to journal › Journal article › Research › peer-review
Published