Kresten Lindorff-Larsen

Kresten Lindorff-Larsen

Professor

ORCID: 0000-0002-4750-6039

Publication year:
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26 - 50 out of 210Page size: 25
  1. 2009

  2. Automated Event Detection and Activity Monitoring in Long Molecular Dynamics Simulations

    Wriggers, W., Stafford, K. A., Shan, Y., Piana, S., Maragakis, P., Lindorff-Larsen, Kresten, Miller, P. J., Gullingsrud, J., Rendleman, C. A., Eastwood, M. P., Dror, R. O. & Shaw, D. E., 1 Oct 2009, In: Journal of Chemical Theory and Computation. 5, 10, p. 2595-2605 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 2010

  4. Atomic-level characterization of the structural dynamics of proteins

    Shaw, D. E., Maragakis, P., Lindorff-Larsen, Kresten, Piana, S., Dror, R. O., Eastwood, M. P., Bank, J. A., Jumper, J. M., Salmon, J. K., Shan, Y. & Wriggers, W., 2010, In: Science (New York, N.Y.). 330, 6002, p. 341-6 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Principles of conduction and hydrophobic gating in K+ channels

    Jensen, M. Ø., Borhani, D. W., Lindorff-Larsen, Kresten, Maragakis, P., Jogini, V., Eastwood, M. P., Dror, R. O. & Shaw, D. E., 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 13, p. 5833-8 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Improved side-chain torsion potentials for the Amber ff99SB protein force field

    Lindorff-Larsen, Kresten, Piana, S., Palmo, K., Maragakis, P., Klepeis, J. L., Dror, R. O. & Shaw, D. E., Jun 2010, In: Proteins: Structure, Function, and Bioinformatics. 78, 8, p. 1950-8 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. 2011

  8. How fast-folding proteins fold

    Lindorff-Larsen, Kresten, Piana, S., Dror, R. O. & Shaw, D. E., 2011, In: Science (New York, N.Y.). 334, 6055, p. 517-20 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. How robust are protein folding simulations with respect to force field parameterization?

    Piana, S., Lindorff-Larsen, Kresten & Shaw, D. E., 2011, In: Biophysical Journal (2011). 100, 9, p. L47-L49

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Computational design and experimental testing of the fastest-folding ß-sheet protein

    Piana, S., Sarkar, K., Lindorff-Larsen, Kresten, Guo, M., Gruebele, M. & Shaw, D. E., 7 Jan 2011, In: Journal of Molecular Biology. 405, 1, p. 43-48 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. 2012

  12. Evaluating the effects of cutoffs and treatment of long-range electrostatics in protein folding simulations

    Piana, S., Lindorff-Larsen, Kresten, Dirks, R. M., Salmon, J. K., Dror, R. O. & Shaw, D. E., 2012, In: P L o S One. 7, 6, 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Paths of long-range communication in the E2 enzymes of family 3: a molecular dynamics investigation

    Papaleo, E., Lindorff-Larsen, Kresten & Gioia, L. D., 2012, In: Physical Chemistry Chemical Physics. 14, p. 12515-12525 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Protein folding kinetics and thermodynamics from atomistic simulation

    Piana, S., Lindorff-Larsen, Kresten & Shaw, D. E., 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 44, p. 17845-17850 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Structure and dynamics of an unfolded protein examined by molecular dynamics simulation

    Lindorff-Larsen, Kresten, Trbovic, N., Maragakis, P., Piana, S. & Shaw, D. E., 2012, In: Journal of the American Chemical Society. 134, 8, p. 3787-3791 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Systematic validation of protein force fields against experimental data

    Lindorff-Larsen, Kresten, Maragakis, P., Piana, S., Eastwood, M. P., Dror, R. O. & Shaw, D. E., 2012, In: P L o S One. 7, 2, 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. 2013
  18. Published

    A sticky cage can slow down folding

    Boomsma, Wouter & Lindorff-Larsen, Kresten, 2013, In: Biophysical Journal. 104, 5, p. 964-965 2 p.

    Research output: Contribution to journal › Comment/debate › Research

  19. Atomic-level description of ubiquitin folding

    Piana, S., Lindorff-Larsen, Kresten & Shaw, D. E., 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 15, p. 5915-5920 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Atomistic description of the folding of a dimeric protein

    Piana, S., Lindorff-Larsen, Kresten & Shaw, D. E., 2013, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 117, 42, p. 12935-12942 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure

    Boomsma, Wouter, Frellsen, J., Harder, T. P., Bottaro, S., Johansson, Kristoffer Enøe, Tian, P., Stovgaard, K., Andreetta, C., Olsson, S., Valentin, J., Antonov, L. D., Christensen, A. S., Borg, M., Jensen, Jan Halborg, Lindorff-Larsen, Kresten, Ferkinghoff-Borg, J. & Hamelryck, Thomas Wim, 2013, In: Journal of Computational Chemistry. 34, 19, p. 1697-1705 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Protein structure validation and refinement using amide proton chemical shifts derived from quantum mechanics

    Christensen, A. S., Linnet, T. E., Borg, M., Boomsma, Wouter, Lindorff-Larsen, Kresten, Hamelryck, Thomas Wim & Jensen, Jan Halborg, 2013, In: PLoS ONE. 8, 12, 10 p., e84123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The Structure of the Central Side Chain is Crucial for Anoplin Hemolytic Activity

    Munk, J., Thøgersen, L., Uggerhøj, L. E., Wimmer, R., Frimodt-Møller, N., Lindorff-Larsen, Kresten & Hansen, Paul Robert, 2013, Proceedings of the 23rd American Peptide Symposium. Lebl, M. (ed.). American Peptide Society

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  24. Published

    Variational optimization of an all-atom implicit solvent force field to match explicit solvent simulation data

    Bottaro, S., Lindorff-Larsen, Kresten & Best, R. B., 2013, In: Journal of Chemical Theory and Computation. 9, 12, p. 5641-5652 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. 2014
  26. Published

    CECAM workshop on intrinsically disordered proteins

    Rösner, Heike Ilona, Papaleo, E., Haxholm, G. W., Best, R. B., Kragelund, Birthe Brandt & Lindorff-Larsen, Kresten, 2014, In: Intrinsically Disordered Proteins. 2, 1, p. 1-5 5 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  27. Published

    Combining experiments and simulations using the maximum entropy principle

    Boomsma, Wouter, Ferkinghoff-Borg, J. & Lindorff-Larsen, Kresten, 2014, In: PLoS Computational Biology. 10, 2, 9 p., e1003406.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Communication routes in ARID domains between distal residues in Helix 5 and the DNA-binding loops

    Invernizzi, G., Tiberti, M., Lambrughi, M., Lindorff-Larsen, Kresten & Papaleo, E., 2014, In: P L o S Computational Biology (Online). 10, 9, 13 p., e1003744.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Conformational changes and free energies in a Proline isomerase

    Papaleo, E., Sutto, L., Gervasio, F. L. & Lindorff-Larsen, Kresten, 2014, In: Journal of Chemical Theory and Computation. 10, 9, p. 4169-4174 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts

    Boomsma, Wouter, Tian, P., Frellsen, J., Ferkinghoff-Borg, J., Hamelryck, Thomas Wim, Lindorff-Larsen, Kresten & Vendruscolo, M., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 38, p. 13852-13857 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Probabilistic determination of native state ensembles of proteins

    Olsson, S., Vögeli, B. R., Cavalli, A., Boomsma, Wouter, Ferkinghoff-Borg, J., Lindorff-Larsen, Kresten & Hamelryck, Thomas Wim, 2014, In: Journal of Chemical Theory and Computation. 10, 8, p. 3484-3491 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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