thw266 KU

thw266 KU

Professor, Affiliate Professor

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    ORCID: 0000-0001-6860-1521

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    1. Published

      The landscape of tolerated genetic variation in humans and primates

      Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R., Balick, D. & 77 others, Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., do Amaral, J. V., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., KU, thw266, Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Bataillon, T., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A., Guschanski, K., Schierup, M. H., Beck, R. M. D., Umapathy, G., Roos, C., Boubli, J. P., Lek, M., Sunyaev, S., O'Donnell-Luria, A., Rehm, H. L., Xu, J., Rogers, J., Marques-Bonet, T. & Farh, K. K. H., 2023, In: Science (New York, N.Y.). 380, 6648, 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Sequencing, de novo assembling, and annotating the genome of the endangered Chinese crocodile lizard Shinisaurus crocodilurus

      Gao, J., Li, Q., Wang, Z., Zhou, Y., Martelli, P., Li, F., Xiong, Z., Wang, J., Yang, H. & KU, thw266, Jul 2017, In: GigaScience. 6, 7, p. 1-6 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      High-quality chromosome-level genome assembly and full-length transcriptome analysis of the pharaoh ant Monomorium pharaonis

      Gao, Q., Xiong, Z., Larsen, Rasmus Stenbak, Zhou, L., Zhao, J., Ding, G., Zhao, R., Liu, C., Ran, H. & KU, thw266, 2020, In: GigaScience. 9, 12, 14 p., giaa143.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Genomic and transcriptomic investigations of the evolutionary transition from oviparity to viviparity

      Gao, W., Sun, Y-B., Zhou, W-W., Xiong, Z-J., Chen, L., Li, H., Fu, T-T., Xu, K., Xu, W., Ma, L., Chen, Y-J., Xiang, X-Y., Zhou, L., Zeng, T., Zhang, S., Jin, J-Q., Chen, H-M., Zhang, G., Hillis, D. M., Ji, X. & 2 others, Zhang, Y. & Che, J., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 9, p. 3646-3655

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet

      Gelabert, P., Sandoval-Velasco, M., Serres, A., de Manuel, M., Renom, P., Margaryan, A., Stiller, J., de-Dios, T., Fang, Q., Feng, S., Mañosa, S., Pacheco, G., Ferrando-Bernal, M., Shi, G., Hao, F., Chen, X., Petersen, B., Olsen, R-A., Navarro, A., Deng, Y. & 6 others, Dalén, L., Marquès-Bonet, T., KU, thw266, Antunes, A., Gilbert, M Thomas P & Lalueza-Fox, C., 2020, In: Current Biology. 30, 1, p. 108-114, e1-e5

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps

      Georges, A., Li, Q., Lian, J., O'Meally, D., Deakin, J., Wang, Z., Zhang, P., Fujita, M., Patel, H. R., Holleley, C. E., Zhou, Y., Zhang, X., Matsubara, K., Waters, P., Graves, J. A. M., Sarre, S. D. & KU, thw266, 2015, In: GigaScience. 4, 10 p., 45.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Species-specific traits mediate avian demographic responses under past climate change

      Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2023, In: Nature Ecology and Evolution. 7, 6, p. 862-872 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Species-specific traits mediate avian demographic responses under past climate change

      Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2022, bioRxiv, 24 p.

      Research output: Working paper › Preprint › Research

    9. Published

      Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

      Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., Vandewege, M. W., John, J. A. S., Capella-Gutierrez, S., Castoe, T. A., Kern, C., Fujita, M. K., Opazo, J. C., Jurka, J., Kojima, K. K., Caballero, J., Hubley, R. M., Smit, A. F., Platt, R. N., Lavoie, C. A. & 35 others, Ramakodi, M. P., Finger Jr., J. W., Suh, A., Isberg, S. R., Miles, L., Chong, A. Y., Jaratlerdsiri, W., Gongora, J., Moran, C., Iriarte, A., McCormack, J., Burgess, S. C., Edwards, S. V., Lyons, E., Williams, C., Breen, M., Howard, J. T., Gresham, C. R., Peterson, D. G., Schmitz, J., Pollock, D. D., Haussler, D., Triplett, E. W., KU, thw266, Irie, N., Jarvis, E. D., Brochu, C. A., Schmidt, C. J., McCarthy, F. M., Faircloth, B. C., Hoffmann, F. G., Glenn, T. C., Gabaldon, T., Paten, B. & Ray, D. A., 2014, In: Science. 346, 6215, 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles

      Greenwold, M. J., Bao, W., Jarvis, E. D., Hu, H., Li, C., Gilbert, M Thomas P, KU, thw266 & Sawyer, R. H., 2014, In: B M C Evolutionary Biology. 14, 16 p., 249.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Harvesting the fruits of the first stage of the Primate Genome Project

      Guo, Y. T., Shao, Y., Bi, X., Zhang, B. L., Wu, H., Zhou, Y., Li, M. L., Yu, L., KU, thw266, Wu, D. D. & Qi, X. G., 2023, In: Zoological research. 44, 4, p. 725-728 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster

      Hargreaves, A. D., Zhou, L., Christensen, J., Marlétaz, F., Liu, S., Li, F., Jansen, P. G., Spiga, E., Hansen, M. T., Pedersen, S. V. H., Biswas, S., Serikawa, K., Fox, B. A., Taylor, W. R., Mulley, J. F., KU, thw266, Heller, R. S. & Holland, P. W. H., 18 Jul 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 29, p. 7677-7682 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Comparative study on pattern recognition receptors in non-teleost ray-finned fishes and their evolutionary significance in primitive vertebrates

      He, Y., Pan, H., KU, thw266 & He, S., 2019, In: Science China Life Sciences. 62, 4, p. 566-578

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      A novel method for using RNA-seq data to identify imprinted genes in social Hymenoptera with multiply mated queens

      Howe, Jack, Schiøtt, M., Li, Q., Wang, Z., KU, thw266 & Boomsma, Jacobus J., 2020, In: Journal of Evolutionary Biology. 33, 12, p. 1770-1782 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Constrained vertebrate evolution by pleiotropic genes

      Hu, H., Uesaka, M., Guo, S., Shimai, K., Lu, T., Li, F., Fujimoto, S., Ishikawa, M., Liu, S., Sasagawa, Y., KU, thw266, Kuratani, S., Yu, J., Kusakabe, T. G., Khaitovich, P. & Irie, N., Nov 2017, In: Nature Ecology and Evolution. 1, 11, p. 1722-1730 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Sensory Rewiring in an Echolocator: Genome-Wide Modification of Retinogenic and Auditory Genes in the Bat Myotis davidii

      Hudson, N. J., Baker, M. L., Hart, N. S., Wynne, J. W., Gu, Q., Huang, Z., KU, thw266, Ingham, A. B., Wang, L. & Reverter, A., 2014, In: G3: Genes, Genomes, Genetics. 4, 10, p. 1825-1835 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Functional Diversity and Evolution of Bitter Taste Receptors in Egg-Laying Mammals

      Itoigawa, A., Hayakawa, T., Zhou, Y., Manning, A. D., KU, thw266, Grutzner, F. & Imai, H., 2022, In: Molecular Biology and Evolution. 39, 6, 9 p., msac107.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Phylogenomic analyses data of the avian phylogenomics project

      Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Alfaro Nuñez, L. A., Narula, N., Liu, L., Burt, D., Ellegren, H., Edwards, S. V., Stamatakis, A. & 7 others, Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Wang, J., Gilbert, M Thomas P & KU, thw266, 2015, In: GigaScience. 4, 9 p., 4.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Whole-genome analyses resolve early branches in the tree of life of modern birds

      Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G. & 85 others, Boussau, B., Bayzid, M. S., Zavidovych, V., Subramanian, S., Gabaldón, T., Capella-Gutiérrez, S., Huerta-Cepas, J., Rekepalli, B., Terkelsen, K. M., Schierup, M. H., Lindow, Bent Erik Kramer, Warren, W. C., Ray, D., Green, R. E., Bruford, M. W., Zhan, X., Dixon, A., Li, S., Li, N., Huang, Y., Derryberry, E. P., Bertelsen, Mads Frost, Sheldon, F. H., Brumfield, R. T., Mello, C. V., Lovell, P. V., Wirthlin, M., Schneider, M. P. C., Prosdocimi, F., Samaniego Castruita, J. A., Velazquez, A. M. V., Alfaro Nuñez, L. A., Campos, P., Petersen, Bent, Sicheritz-Ponten, T., Pas, A., Bailey, T., Scofield, P., Bunce, M., Lambert, D. M., Zhou, Q., Perelman, P., Driskell, A. C., Shapiro, B., Xiong, Z., Zeng, Y., Liu, S., Li, Z., Liu, B., Wu, K., Xiao, J., Yinqi, X., Zheng, Q., Zhang, Y., Yang, H., Wang, J., Smeds, L., Rheindt, F. E., Braun, M., Fjeldså, Jon, Orlando, L. A. A., Barker, F. K., Jønsson, Knud Andreas, Johnson, W., Koepfli, K. P., O'Brien, S., Haussler, D., Ryder, O. A., Rahbek, Carsten, Willerslev, Eske, Graves, G. R., Glenn, T. C., McCormack, J., Burt, D., Ellegren, H., Alström, P., Edwards, S. V., Stamatakis, A., Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Wang, J., Gilbert, M Thomas P & KU, thw266, 2014, In: Science. 346, 6215, p. 1320-1331 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds

      Ji, Y., Feng, S., Wu, L., Fang, Q., Brüniche-Olsen, Anna, DeWoody, J. A., Cheng, Y., Zhang, D., Hao, Y., Song, G., Qu, Y., Suh, A., KU, thw266, Hackett, S. J. & Lei, F., 2022, In: Science Advances. 8, 35, 11 p., eabo0099.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Draft Genome Assembly and Population Genetics of an Agricultural Pollinator, the Solitary Alkali Bee (Halictidae: Nomia melanderi)

      Kapheim, K. M., Pan, H., Li, C., Blatti, C., Harpur, B. A., Ioannidis, P., Jones, B. M., Kent, C. F., Ruzzante, L., Sloofman, L., Stolle, E., Waterhouse, R. M., Zayed, A., KU, thw266 & Wcislo, W. T., 2019, In: G3: Genes, Genomes, Genetics (Bethesda). 9, 3, p. 625-634

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Developmental plasticity shapes social traits and selection in a facultatively eusocial bee

      Kapheim, K. M., Jones, B. M., Pan, H., Li, C., Harpur, B. A., Kent, C. F., Zayed, A., Ioannidis, P., Waterhouse, R. M., Kingwell, C., Stolle, E., Avalos, A., KU, thw266, McMillan, W. O. & Wcislo, W. T., 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 24, p. 13615-13625 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Genomic signatures of evolutionary transitions from solitary to group living

      Kapheim, K. M., Pan, H., Li, C., Salzberg, S. L., Puiu, D., Magoc, T., Robertson, H. M., Hudson, M. E., Venkat, A., Fischman, B. J., Hernandez, A., Yandell, M., Ence, D., Holt, C., Yocum, G. D., Kemp, W. P., Bosch, J., Waterhouse, R. M., Zdobnov, E. M., Stolle, E. & 32 others, Kraus, F. B., Helbing, S., Moritz, R. F. A., Glastad, K. M., Hunt, B. G., Goodisman, M. A. D., Hauser, Frank, Grimmelikhuijzen, Cornelis (Cok), Pinheiro, D. G., Nunes, F. M. F., Soares, M. P. M., Tanaka, É. D., Simões, Z. L. P., Hartfelder, K., Evans, J. D., Barribeau, S. M., Johnson, R. M., Massey, J. H., Southey, B. R., Hasselmann, M., Hamacher, D., Biewer, M., Kent, C. F., Zayed, A., Blatti, C., Sinha, S., Johnston, J. S., Hanrahan, S. J., Kocher, S. D., Wang, J., Robinson, G. E. & KU, thw266, 2015, In: Science (New York, N.Y.). 348, 6239, p. 1139-1143 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host-Pathogen Arms Race in Birds

      Khan, I., Maldonado, E., Silva, L., Almeida, D., Johnson, W. E., O'Brien, S. J., KU, thw266, Jarvis, E. D., Gilbert, M Thomas P & Antunes, A., 2019, In: Diversity. 11, 8, 25 p., 131.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Olfactory receptor subgenomes linked with broad ecological adaptations in sauropsida

      Khan, I., Yang, Z., Maldonado, E., Li, C., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2015, In: MOLECULAR BIOLOGY AND EVOLUTION . 32, 11, p. 2832-2843 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 40294134