Implementation of sustainable urban drainage systems (SUDS) as part of cities’ transition towards climate resilience encompasses unique opportunities to enhance urban nature qualities. SUDS include individual elements integrated in the urban landscape, e.g. rain gardens or wet basins, which are usually constructed with low structural heterogeneity. Structural heterogeneity of habitats is, however, associated with a high degree of biodiversity. This study explored potentials of habitat heterogeneity enhancement in SUDS using structural heterogeneity as a proxy for biodiversity potential. In an interdisciplinary workshop, landscape architects and urban ecologists designed individual SUDS elements with enhanced structural habitat heterogeneity, hereafter bio-SUDS. The redesigned SUDS elements were infiltration trench, curb extension, rain garden, swale, wet basin, and dry basin. To evaluate the bio-SUDS designs, we developed an index of habitat heterogeneity in SUDS based on registration of 45 structurally important components. The conversion from standard SUDS to bio-SUDS entailed substantial increases in structural heterogeneity ranging from 4 to 18 additional components within elements. Larger bio-SUDS elements returned higher index scores, but the relative score increases were substantial for all bio-SUDS and in the range of a factor of 2–5.5. Increased terrain differences, meandering edges, stones, gravel, boulders, deadwood, and brown roof-like vegetation were the components most often employed in the bio-SUDS designs. In conclusion, implementation of bio-SUDS has potential to increase structural habitat heterogeneity thereby providing habitat for biodiversity in urban green areas. The developed bio-SUDS index can assist in future assessments of ecological qualities in designs and real-world SUDS elements.