Principles of conduction and hydrophobic gating in K+ channels

Research output: Contribution to journalJournal articleResearchpeer-review

  • Morten Ø Jensen
  • David W Borhani
  • Lindorff-Larsen, Kresten
  • Paul Maragakis
  • Vishwanath Jogini
  • Michael P Eastwood
  • Ron O Dror
  • David E Shaw
We present the first atomic-resolution observations of permeation and gating in a K(+) channel, based on molecular dynamics simulations of the Kv1.2 pore domain. Analysis of hundreds of simulated permeation events revealed a detailed conduction mechanism, resembling the Hodgkin-Keynes "knock-on" model, in which translocation of two selectivity filter-bound ions is driven by a third ion; formation of this knock-on intermediate is rate determining. In addition, at reverse or zero voltages, we observed pore closure by a novel "hydrophobic gating" mechanism: A dewetting transition of the hydrophobic pore cavity-fastest when K(+) was not bound in selectivity filter sites nearest the cavity-caused the open, conducting pore to collapse into a closed, nonconducting conformation. Such pore closure corroborates the idea that voltage sensors can act to prevent pore collapse into the intrinsically more stable, closed conformation, and it further suggests that molecular-scale dewetting facilitates a specific biological function: K(+) channel gating. Existing experimental data support our hypothesis that hydrophobic gating may be a fundamental principle underlying the gating of voltage-sensitive K(+) channels. We suggest that hydrophobic gating explains, in part, why diverse ion channels conserve hydrophobic pore cavities, and we speculate that modulation of cavity hydration could enable structural determination of both open and closed channels.
Original languageEnglish
JournalProceedings of the National Academy of Sciences of the United States of America
Volume107
Issue number13
Pages (from-to)5833-8
Number of pages6
ISSN0027-8424
DOIs
Publication statusPublished - 2010
Externally publishedYes

ID: 37812360