Kristian Ebbesen Hanghøj

Kristian Ebbesen Hanghøj

Guest researcher, Guest Researcher

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    ORCID: 0000-0003-1941-5495

    Publication year:
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    1 - 28 out of 28Page size: 100
    1. 2024
    2. Published

      African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival

      Balboa, R. F., Bertola, L. D., Brüniche-Olsen, A., Rasmussen, M. S., Liu, X., Besnard, G., Salmona, J., Santander, C. G., He, S., Zinner, D., Pedrono, M., Muwanika, V., Masembe, C., Schubert, M., Kuja, J., Quinn, L., Garcia-Erill, G., Stæger, F. F., Rakotoarivony, R., Henrique, M. & 14 others, Lin, Long, Wang, X., Heaton, M. P., Smith, T. P. L., Hanghøj, Kristian Ebbesen, Sinding, Mikkel Holger Strander, Atickem, A., Chikhi, L., Roos, C., Gaubert, P., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 15 p., 172.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Giraffe lineages are shaped by major ancient admixture events

      Bertola, L. D., Quinn, L., Hanghøj, K., Garcia-Erill, G., Rasmussen, M. S., Balboa, R. F., Meisner, J., Bøggild, T., Wang, X., Lin, L., Nursyifa, C., Liu, X., Li, Z., Chege, M., Moodley, Y., Brüniche-Olsen, A., Kuja, J., Schubert, M., Agaba, M., Santander, C. G. & 7 others, Sinding, Mikkel Holger Strander, Muwanika, V., Masembe, C., Siegismund, Hans Redlef, Moltke, Ida, Albrechtsen, Anders & Heller, Rasmus, 2024, In: Current Biology. 34, 7, p. 1576-1586.e5 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations

      Liu, X., Lin, L., Sinding, M. H. S., Bertola, L. D., Hanghøj, K., Quinn, L., Garcia-Erill, G., Rasmussen, M. S., Schubert, M., Pečnerová, P., Balboa, R. F., Li, Z., Heaton, M. P., Smith, T. P. L., Pinto, R. R., Wang, X., Kuja, J., Brüniche-Olsen, A., Meisner, J., Santander, C. G. & 8 others, Ogutu, J. O., Masembe, C., Rodrigues da Fonseca, Rute Andreia, Muwanika, V., Siegismund, Hans Redlef, Albrechtsen, Anders, Moltke, Ida & Heller, Rasmus, 2024, In: Nature Communications. 15, 1, 16 p., 2921.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Population genomics of the muskox' resilience in the near absence of genetic variation

      Pečnerová, P., Lord, E., Garcia-Erill, G., Hanghøj, K., Rasmussen, M. S., Meisner, J., Liu, X., van der Valk, T., Santander, C. G., Quinn, L., Lin, L., Liu, S., Carøe, C., Dalerum, F., Götherström, A., Måsviken, J., Vartanyan, S., Raundrup, K., Al-Chaer, A., Rasmussen, L. & 11 others, Hvilsom, C., Heide-Jørgensen, M. P., Sinding, Mikkel Holger Strander, Aastrup, P., Van Coeverden de Groot, P. J., Schmidt, N. M., Albrechtsen, Anders, Dalén, L., Heller, Rasmus, Moltke, Ida & Siegismund, Hans Redlef, 2024, In: Molecular Ecology. 33, 2, 25 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. 2023
    7. Published

      Colonialism in South Africa leaves a lasting legacy of reduced genetic diversity in Cape buffalo

      Quinn, Liam James Elgaard, Garcia Erill, Genís, Santander, Cindy, Brüniche-Olsen, Anna, Liu, Xiaodong, Sinding, Mikkel Holger Strander, Heaton, M. P., Smith, T. P. L., Chrzanová Pecnerová, Patrícia, Bertola, Laura, Hanghøj, Kristian Ebbesen, Rasmussen, Malthe Sebro, De Jager, Deon, Siegismund, Hans Redlef, Albrechtsen, Anders, Heller, Rasmus & Moltke, Ida, 2023, In: Molecular Ecology. 32, 8, 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Estimating admixture pedigrees of recent hybrids without a contiguous reference genome

      Garcia Erill, Genís, Hanghøj, Kristian Ebbesen, Heller, Rasmus, Wiuf, Carsten & Albrechtsen, Anders, 2023, In: Molecular Ecology Resources. 23, 7, p. 1604-1619 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. 2022
    10. Published

      An LDLR missense variant poses high risk of familial hypercholesterolemia in 30% of Greenlanders and offers potential of early cardiovascular disease intervention

      Jørsboe, E., Andersen, M. K., Skotte, L., Stæger, F. F., Færgeman, N. J., Hanghøj, K., Santander, C. G., Senftleber, N. K., Diaz, L. J., Overvad, M., Waples, R. K., Geller, F., Bjerregaard, P., Melbye, M., Larsen, C. V. L., Feenstra, B., Anders Koch, K., Jørgensen, M. E., Grarup, N., Moltke, I. & 2 others, Albrechtsen, Anders & Hansen, Torben, 2022, In: Human Genetics and Genomics Advances. 3, 4, 10 p., 100118.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Loss of sucrase-isomaltase function increases acetate levels and improves metabolic health in Greenlandic cohorts

      Andersen, M. K., Skotte, L., Jørsboe, E., Polito, R., Stæger, F. F., Aldiss, P., Hanghøj, K., Waples, R. K., Santander, C. G., Grarup, N., Dahl-Petersen, I. K., Diaz, L. J., Overvad, M., Senftleber, N. K., Søborg, B., Larsen, C. V. L., Lemoine, C., Pedersen, O., Feenstra, B., Bjerregaard, P. & 9 others, Melbye, M., Jørgensen, M. E., Færgeman, N. J., Koch, A., Moritz, Thomas, Gillum, M. P., Moltke, Ida, Hansen, Torben & Albrechtsen, Anders, 2022, In: Gastroenterology. 162, 4, p. 1171-1182.e3

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. 2021
    13. Published

      Detecting selection in low-coverage high-throughput sequencing data using principal component analysis

      Meisner, Jonas, Albrechtsen, Anders & Hanghøj, Kristian Ebbesen, 2021, In: BMC Bioinformatics. 22, 13 p., 470.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      High genetic diversity and low differentiation reflect the ecological versatility of the African leopard

      Chrzanová Pecnerová, Patrícia, Garcia Erill, Genís, Liu, Xiaodong, Nursyifa, Casia, Waples, R. K., Santander, Cindy, Quinn, Liam James Elgaard, Frandsen, P., Meisner, Jonas, Stæger, Frederik Filip Vinggaard, Rasmussen, Malthe Sebro, Brüniche-Olsen, Anna, Jørgensen, C. H. F., Rodrigues da Fonseca, Rute Andreia, Siegismund, Hans Redlef, Albrechtsen, Anders, Heller, Rasmus, Moltke, Ida & Hanghøj, Kristian Ebbesen, 2021, In: Current Biology. 31, 9, p. 1862-1871, e1-e5

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data

      Nøhr, A. K., Hanghøj, Kristian Ebbesen, Garcia Erill, Genís, Li, Zilong, Moltke, Ida & Albrechtsen, Anders, 2021, In: G3: Genes, Genomes, Genetics. 11, 8, 8 p., jkab174.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. 2020
    17. Published

      Targeted conservation genetics of the endangered chimpanzee

      Frandsen, P., Fontsere, C., Nielsen, S. V., Hanghøj, Kristian Ebbesen, Castejon-Fernandez, N., Lizano, E., Hughes, D., Hernandez-Rodriguez, J., Korneliussen, Thorfinn Sand, Carlsen, F., Siegismund, Hans Redlef, Mailund, T., Marques-Bonet, T. & Hvilsom, C., 2020, In: Heredity. 125, 1-2, p. 15-27 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      The derived allele of a novel intergenic variant at chromosome 11 associates with lower body mass index and a favorable metabolic phenotype in Greenlanders

      Andersen, M. K., Jørsboe, E., Skotte, L., Hanghøj, K., Sandholt, C. H., Moltke, I., Grarup, N., Kern, T., Mahendran, Y., Søborg, B., Bjerregaard, P., Larsen, C. V. L., Dahl-Petersen, I. K., Tiwari, H. K., Feenstra, B., Koch, A., Wiener, H. W., Hopkins, S. E., Pedersen, O., Melbye, M. & 4 others, Boyer, B. B., Jørgensen, M. E., Albrechtsen, Anders & Hansen, Torben, 2020, In: PLOS Genetics. 16, 1, 17 p., e1008544.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. 2019
    20. Published

      Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding

      Hanghøj, Kristian Ebbesen, Moltke, Ida, Andersen, P. A., Manica, A. & Korneliussen, Thorfinn Sand, May 2019, In: GigaScience. 8, 5, 9 p., giz034.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage

      Hanghøj, Kristian Ebbesen, Renaud, Gabriel, Albrechtsen, Anders & Orlando, L., 2019, In: GigaScience. 8, 4, 6 p., giz025.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples

      Renaud, Gabriel, Hanghøj, Kristian Ebbesen, Korneliussen, Thorfinn Sand, Willerslev, Eske & Orlando, L., 2019, In: Genetics (Print). 212, 3, p. 587-614 28 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series

      Fages, A., Hanghøj, K., Khan, N., Gaunitz, C., Seguin-Orlando, A., Leonardi, M., McCrory Constantz, C., Gamba, C., Al-Rasheid, K. A. S., Albizuri, S., Alfarhan, A. H., Allentoft, M., Alquraishi, S., Anthony, D., Baimukhanov, N., Barrett, J. H., Bayarsaikhan, J., Benecke, N., Bernáldez-Sánchez, E., Berrocal-Rangel, L. & 101 others, Biglari, F., Boessenkool, S., Boldgiv, B., Brem, G., Brown, D., Burger, J., Crubézy, E., Daugnora, L., Davoudi, H., Damgaard, P. D. B., de los Ángeles de Chorro y de Villa-Ceballos, M., Deschler-Erb, S., Detry, C., Dill, N., do Mar Oom, M., Dohr, A., Ellingvåg, S., Erdenebaatar, D., Fathi, H., Felkel, S., Fernández-Rodríguez, C., García-Viñas, E., Germonpré, M., Granado, J. D., Hallsson, J. H., Hemmer, H., Hofreiter, M., Kasparov, A., Khasanov, M., Khazaeli, R., Kosintsev, P., Kristiansen, K., Kubatbek, T., Kuderna, L., Kuznetsov, P., Laleh, H., Leonard, J. A., Lhuillier, J., Liesau von Lettow-Vorbeck, C., Logvin, A., Lõugas, L., Ludwig, A., Luis, C., Arruda, A. M., Marques-Bonet, T., Matoso Silva, R., Merz, V., Mijiddorj, E., Miller, B. K., Monchalov, O., Mohaseb, F. A., Morales, A., Nieto-Espinet, A., Nistelberger, H., Onar, V., Pálsdóttir, A. H., Pitulko, V., Pitskhelauri, K., Pruvost, M., Rajic Sikanjic, P., Rapan Papeša, A., Roslyakova, N., Sardari, A., Sauer, E., Schafberg, R., Scheu, A., Schibler, J., Schlumbaum, A., Serrand, N., Serres-Armero, A., Shapiro, B., Sheikhi Seno, S., Shevnina, I., Shidrang, S., Southon, J., Star, B., Sykes, N., Taheri, K., Taylor, W., Teegen, W. R., Trbojević Vukičević, T., Trixl, S., Tumen, D., Undrakhbold, S., Usmanova, E., Vahdati, A., Valenzuela-Lamas, S., Viegas, C., Wallner, B., Weinstock, J., Zaibert, V., Clavel, B., Lepetz, S., Mashkour, M., Helgason, A., Stefánsson, K., Barrey, E., Willerslev, Eske, Outram, A. K., Librado, P. & Orlando, L., 2019, In: Cell. 177, 6, p. 1419-1435, e1-e31

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. 2018
    25. Published

      Ancient genomes revisit the ancestry of domestic and Przewalski's horses

      Gaunitz, C., Fages, A. A., Hanghøj, K. E., Albrechtsen, A., Khan, N., Schubert, M., Seguin-Orlando, A., Owens, I. J., Felkel, S., Bignon-Lau, O., Damgaard, P. D. B., Mittnik, A., Mohaseb, A. F., Davoudi, H., Alquraishi, S., Alfarhan, A. H., Al-Rasheid, K. A. S., Crubézy, E., Benecke, N., Olsen, S. & 27 others, Brown, D., Anthony, D., Massy, K., Pitulko, V., Kasparov, A., Brem, G., Hofreiter, M., Mukhtarova, G., Baimukhanov, N., Lõugas, L., Onar, V., Stockhammer, P. W., Krause, J., Boldgiv, B., Undrakhbold, S., Erdenebaatar, D., Lepetz, S., Mashkour, M., Ludwig, A., Wallner, B., Merz, V., Merz, I., Zaibert, V., Willerslev, Eske, Sanz, P. L., Outram, A. K. & Orlando, L. A. A., 2018, In: Science. 360, 6384, p. 111-114 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Genomic investigations of horse domestication using ancient DNA and a novel statistical method for epigenomic inference from ancient DNA sequencing data

      Hanghøj, Kristian Ebbesen, 2018, Department of Biology, Faculty of Science, University of Copenhagen.

      Research output: Book/Report › Ph.D. thesis › Research

    27. Published

      Oral health status in historic population: Macroscopic and metagenomic evidence

      Willmann, C., Mata, X., Hanghøj, Kristian Ebbesen, Tonasso, L., Tisseyre, L., Jeziorski, C., Cabot, E., Chevet, P., Crubézy, E., Orlando, L., Esclassan, R., Thèves, C. & Caramelli, D., 2018, In: PLOS ONE. 13, 5, 18 p., e0196482.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. 2017
    29. Published

      fastNGSadmix: admixture proportions and principal component analysis of a single NGS sample

      Jørsboe, E., Hanghøj, Kristian Ebbesen & Albrechtsen, Anders, 1 Oct 2017, In: Bioinformatics. 33, 19, p. 3148-3150 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Published

      Combining bleach and mild predigestion improves ancient DNA recovery from bones

      Boessenkool, S., Hanghøj, Kristian Ebbesen, Nistelberger, H. M., Der Sarkissian, C., Gondek, A. T., Orlando, L. A. A., Barrett, J. H. & Star, B., Jul 2017, In: Molecular Ecology Resources. 17, 4, p. 742–751 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Published

      gargammel: a sequence simulator for ancient DNA

      Renaud, Gabriel, Hanghøj, Kristian Ebbesen, Willerslev, Eske & Orlando, L. A. A., 2017, In: Bioinformatics. 33, 4, p. 577-579 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. 2016
    33. Published

      metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data

      Louvel, G., Der Sarkissian, C., Hanghøj, Kristian Ebbesen & Orlando, L. A. A., Nov 2016, In: Molecular Ecology Resources. 16, 6, p. 1415-1427 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Published

      The evolutionary origin and genetic makeup of domestic horses

      Sanz, P. L., Fages, A. A., Gaunitz, Charleen, Leonardi, M., Wagner, S., Khan, N., Hanghøj, Kristian Ebbesen, Alquraishi, S. A., Alfarhan, A. H., Al-Rasheid, K. A., Der Sarkissian, C., Schubert, Mikkel & Orlando, L. A. A., Oct 2016, In: Genetics. 204, 2, p. 423-434 12 p.

      Research output: Contribution to journal › Review › Research › peer-review

    35. Published

      Clonal yeast biofilms can reap competitive advantages through cell differentiation without being obligatorily multicellular

      Regenberg, Birgitte, Hanghøj, Kristian Ebbesen, Andersen, K. S. & Boomsma, Jacobus J., 2016, In: Royal Society of London. Proceedings B. Biological Sciences. 283, 1842, 8 p., 20161303.

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. Published

      Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing

      Gamba, C., Hanghøj, Kristian Ebbesen, Gaunitz, Charleen, Alfarhan, A. H., Alquraishi, S. A., Al-Rasheid, K. A. S., Bradley, D. G. & Orlando, L. A. A., 2016, In: Molecular Ecology Resources. 16, 2, p. 459-469 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    37. Published

      Fast, accurate and automatic ancient nucleosome and methylation maps with epiPALEOMIX

      Hanghøj, Kristian Ebbesen, Seguin-Orlando, A., Schubert, Mikkel, Madsen, T., Pedersen, J. S., Willerslev, Eske & Orlando, L. A. A., 2016, In: Molecular Biology and Evolution. 33, 12, p. 3284-3298 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    ID: 146844414