Finn Cilius Nielsen

Finn Cilius Nielsen

Clinical Professor

Member of:

  • Clinical Biochemistry


  1. 2022
  2. Published

    Extensive genomic analysis in patients with KRAS-mutated solid tumors shows high frequencies of concurrent alterations and potential targets but has limited clinical impact

    Jacobsen, I. C., Spanggaard, I., Højgaard, M., Belcaid, L., Qvortrup, Camilla, Yde, C. W., Schmidt, A. Y., Nielsen, Finn Cilius, Willemoe, G. L., Dam, M. S., Lassen, Ulrik Niels & Staal Rohrberg, K., 2022, In: Acta Oncologica. 61, 12, p. 1499-1506 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Targeting the tumor mutanome for personalized vaccination in a TMB low non-small cell lung cancer

    McCann, K., Von Witzleben, A., Thomas, J., Wang, C., Wood, O., Singh, D., Boukas, K., Bendjama, K., Silvestre, N., Nielsen, Finn Cilius, Thomas, G., Sanchez-Elsner, T., Greenbaum, J., Schoenberger, S., Peters, B., Vijayanand, P., Savelyeva, N. & Ottensmeier, C., 2022, In: Journal for ImmunoTherapy of Cancer. 10, 3, 14 p., e003821.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Tumor mutational burden and purity adjustment before and after treatment with temozolomide in 27 paired samples of glioblastoma: a prospective study

    Nørøxe, D. S., Flynn, A., Yde, C. W., Østrup, O., Nielsen, Finn Cilius, Skjøth, Jane, Brennum, J., Hamerlik, P., Weischenfeldt, Joachim Lütken, Skovgaard Poulsen, H. & Lassen, Ulrik Niels, 2022, In: Molecular Oncology. 16, 1, p. 206-218

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Personalized circulating tumor DNA in patients with hepatocellular carcinoma: a pilot study

    Pommergaard, Hans-Christian L, Yde, C. W., Ahlborn, L. B., Andersen, C. L., Henriksen, T., Hasselby, Jane Preuss, Rostved, A. A., Sorensen, C. L., Rohrberg, K. S., Nielsen, Finn Cilius & Rasmussen, Anne, 2022, In: Molecular Biology Reports. 49, 2, p. 1609-1616 8 p.

    Research output: Contribution to journalLetterResearchpeer-review

  6. Published

    Benchmarking full-length transcript single cell mRNA sequencing protocols

    Probst, V., Simonyan, Arman, Pacheco, F., Guo, Yuliu, Nielsen, Finn Cilius & Bagger, F. O., 2022, In: BMC Genomics. 23, 860.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Differences in gene expression despite identical histomorphology in sinonasal intestinal-type adenocarcinoma and metastases from colorectal adenocarcinoma

    Sjöstedt, S., Vieira, Filipe Garrett, Karnov, K., Agander, T. K., Willemoe, G. L., Rohrberg, K. S., Nielsen, Finn Cilius & von Buchwald, Christian, 2022, In: APMIS. 130, 9, p. 551-559

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Intestinal metaplasia is a precursor lesion for sinonasal intestinal-type adenocarcinoma: genomic investigation of a case proving this hypothesis

    Sjöstedt, S., Schmidt, A. Y., Vieira, Filipe Garrett, Woller, N. C., Nielsen, Finn Cilius & von Buchwald, Christian, Jan 2022, In: APMIS. 130, 1, p. 53-56 4 p.

    Research output: Contribution to journalLetterResearchpeer-review

  9. Published

    Interpretable autoencoders trained on single cell sequencing data can transfer directly to data from unseen tissues

    Walbech, J. S., Kinalis, S., Winther, Ole, Nielsen, Finn Cilius & Bagger, F. O., 2022, In: Cells. 11, 12 p., 85.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. 2021
  11. Published

    A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers

    GEMO Study Collaborators, G. S. C., EMBRACE Collaborators, E. C., kConFab Investigators, K. I., HEBON Investigators, H. I. & ABCTB Investigators, A. I., Dec 2021, In: Nature Communications. 12, 1, 22 p., 1078.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

    Gabrielaite, M., Torp, M., Rasmussen, M., Andreu-Sánchez, S., Vieira, Filipe Garrett, Pedersen, C., Kinalis, S., Madsen, M., Yde, C., Rønn, O. L., Marvig, R., Østrup, O., Rossing, Caroline Maria, Nielsen, Finn Cilius, Winther, Ole & Bagger, F. O., 2021, bioRxiv, 29 p.

    Research output: Working paperPreprintResearch

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