David Alejandro Duchene Garzon

David Alejandro Duchene Garzon

Associate Professor

ORCID: 0000-0002-5479-1974

Publication year:
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1 - 25 out of 25Page size: 500
  1. 2024
  2. Published

    ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2024, In: Genome Biology and Evolution. 16, 4, 7 p., evae064.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The limits of the constant-rate birth-death prior for phylogenetic tree topology inference

    Khurana, Mark Poulsen, Scheidwasser, Neil Alexandre, Penn, M. J., Bhatt, Samir & Duchene, David, 2024, In: Systematic Biology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. 2023
  5. Published

    A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea

    Westbury, Michael Vincent, Cabrera, Andrea A., Rey de la Iglesia, Alba, Westbury, Binia De Cahsan, Duchene, David, Hartmann, S. & Lorenzen, Eline, 2023, In: Molecular Ecology. 32, 17, p. 4829-4843 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    ClockstaRX: testing molecular clock hypotheses with genomic data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.

    Research output: Working paper › Preprint › Research

  7. Published

    Leaping through Tree Space: Continuous Phylogenetic Inference for Rooted and Unrooted Trees

    Penn, M. J., Scheidwasser, Neil Alexandre, Penn, J., Donnelly, C. A., Duchene, David & Bhatt, Samir, 2023, In: Genome Biology and Evolution. 15, 12, 17 p., evad213.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. 2022
  9. Published

    Environmental niche and flight intensity are associated with molecular evolutionary rates in a large avian radiation

    Montoya, P., Cadena, C. D., Claramunt, S. & Duchene, David, Dec 2022, In: BMC Ecology and Evolution. 22, 10 p., 95.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Bird lineages colonizing urban habitats have diversified at high rates across deep time

    Iglesias-Carrasco, M., Tobias, J. A. & Duchene, David, 2022, In: Global Ecology and Biogeography. 31, 9, p. 1784-1793 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Blue Turns to Gray: Paleogenomic Insights into the Evolutionary History and Extinction of the Blue Antelope (Hippotragus leucophaeus)

    Hempel, E., Bibi, F., Faith, J. T., Koepfli, K., Klittich, A. M., Duchene, David, Brink, J. S., Kalthoff, D. C., Dalén, L., Hofreiter, M. & Westbury, Michael Vincent, 2022, In: Molecular Biology and Evolution. 39, 12, 16 p., msac241.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Evolutionary Rate Variation Among Lineages in Gene Trees has a Negative Impact on Species-Tree Inference

    Vankan, M., Ho, S. Y. W. & Duchene, David, 2022, In: Systematic Biology. 71, 2, p. 490-500

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Excluding Loci With Substitution Saturation Improves Inferences From Phylogenomic Data

    Duchene, David, Mather, N., Van Der Wal, C. & Ho, S. Y. W., 2022, In: Systematic Biology. 71, 3, p. 676-689

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Genomic insights into the evolutionary relationships and demographic history of kiwi

    Westbury, Michael Vincent, Westbury, Binia De Cahsan, Shepherd, L. D., Holdaway, R. N., Duchene, David & Lorenzen, Eline, 2022, In: PLoS ONE. 17, 10, 17 p., e0266430.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Multiple types of genomic variation contribute to adaptive traits in the mustelid subfamily Guloninae

    Derežanin, L., Blažytė, A., Dobrynin, P., Duchene, David, Grau, J. H., Jeon, S., Kliver, S., Koepfli, K., Meneghini, D., Preick, M., Tomarovsky, A., Totikov, A., Fickel, J. & Förster, D. W., 2022, In: Molecular Ecology. 31, 10, p. 2898-2919 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Probing the genomic limits of de-extinction in the Christmas Island rat

    Lin, J., Duchene, David, Carøe, C., Smith, O., Ciucani, M. M., Niemann, Jonas, Richmond, D., Greenwood, A. D., MacPhee, R., KU, thw266, Gopalakrishnan, Shyam & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 7, p. 1650-1656.e3

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. 2021
  18. Published

    Phylogenomics

    Duchene, David, 11 Oct 2021, In: Current Biology. 31, 19, p. R1177-R1181 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

    Liu, S., Westbury, M. V., Dussex, N., Mitchell, K. J., Sinding, M. H. S., Heintzman, P. D., Duchêne, D. A., Kapp, J. D., von Seth, J., Heiniger, H., Sánchez-Barreiro, F., Margaryan, A., André-Olsen, R., De Cahsan, B., Meng, G., Yang, C., Chen, L., van der Valk, T., Moodley, Y., Rookmaaker, K. & 19 others, Bruford, M. W., Ryder, O., Steiner, C., Sonsbeek, L. G. R. B., Vartanyan, S., Guo, C., Cooper, A., Kosintsev, P., Kirillova, I., Lister, A. M., Marques-Bonet, T., Gopalakrishnan, Shyam, Dunn, Rob, Lorenzen, Eline, Shapiro, B., KU, thw266, Antoine, P. O., Dalén, L. & Gilbert, M Thomas P, 2021, In: Cell. 184, 19, p. 4874-4885.e16

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Ecological Specialization and Evolutionary Reticulation in Extant Hyaenidae

    Westbury, Michael Vincent, Le Duc, D., Duchene, David, Krishnan, A., Prost, S., Rutschmann, S., Grau, J. H., Dalén, L., Weyrich, A., Norén, K., Werdelin, L., Dalerum, F., Schöneberg, T. & Hofreiter, M., 2021, In: Molecular Biology and Evolution. 38, 9, p. 3884-3897 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

    Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Duchene, David, Puetz, Lara Christine, Delmont, T. O., Sveier, H., Jørgensen, Louise von Gersdorff, Præbel, K., Martin, M. D., Bojesen, Anders Miki, Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2021, In: Communications Biology. 4, 10 p., 579.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. 2020

  23. A Simulation-Based Evaluation of Tip-Dating Under the Fossilized Birth-Death Process

    Luo, A., Duchene, David, Zhang, C., Zhu, C. & Ho, S. Y. W., 2020, In: Systematic Biology. 69, 2, p. 325-344

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Accounting for Uncertainty in the Evolutionary Timescale of Green Plants Through Clock-Partitioning and Fossil Calibration Strategies

    Nie, Y., Foster, C. S. P., Zhu, T., Yao, R., Duchene, David, Ho, S. Y. W. & Zhong, B., 2020, In: Systematic Biology. 69, 1, p. 1-16

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Linking Branch Lengths across Sets of Loci Provides the Highest Statistical Support for Phylogenetic Inference

    Duchene, David, Tong, K. J., Foster, C. S. P., Duchêne, S., Lanfear, R. & Ho, S. Y. W., 2020, In: Molecular Biology and Evolution. 37, 4, p. 1202-1210

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. 2019

  27. Sex in the city: sexual selection and urban colonization in passerines

    Iglesias-Carrasco, M., Duchene, David, Head, M. L., Møller, A. P. & Cain, K., 2019, In: Biology Letters. 15, 9, 4 p., 20190257.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. 2018

  29. Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods

    Duchene, S., Duchene, David, Geoghegan, J. L., Dyson, Z. A., Hawkey, J. & Holt, K. E., 2018, In: BMC Evolutionary Biology. 18, 11 p., 95.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. 2015

  31. Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences

    Duchene, David, Duchêne, S. & Ho, S. Y. W., 2015, In: Molecular Ecology Resources. 15, 4, p. 785-794

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. 2013

  33. Phylogenetic evidence for recent diversification of obligate coral-dwelling gobies compared with their host corals

    Duchene, David, Klanten, S. O., Munday, P. L., Herler, J. & van Herwerden, L., 2013, In: Molecular Phylogenetics and Evolution. 69, 1, p. 123-132

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Rates of molecular evolution and diversification in plants: chloroplast substitution rates correlate with species-richness in the Proteaceae

    Duchene, David & Bromham, L., 2013, In: BMC Evolutionary Biology. 13, 11 p., 65.

    Research output: Contribution to journal › Journal article › Research › peer-review

ID: 247671713