David Alejandro Duchene Garzon
Associate Professor
Section of Epidemiology
Bartholinsgade 6Q, 2. sal
1356 København K
A Simulation-Based Evaluation of Tip-Dating Under the Fossilized Birth-Death Process
Luo, A., Duchene, David, Zhang, C., Zhu, C. & Ho, S. Y. W., 2020, In: Systematic Biology. 69, 2, p. 325-344Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea
Westbury, Michael Vincent, Cabrera, Andrea A., Rey de la Iglesia, Alba, Westbury, Binia De Cahsan, Duchene, David, Hartmann, S. & Lorenzen, Eline, 2023, In: Molecular Ecology. 32, 17, p. 4829-4843 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
Accounting for Uncertainty in the Evolutionary Timescale of Green Plants Through Clock-Partitioning and Fossil Calibration Strategies
Nie, Y., Foster, C. S. P., Zhu, T., Yao, R., Duchene, David, Ho, S. Y. W. & Zhong, B., 2020, In: Systematic Biology. 69, 1, p. 1-16Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient and modern genomes unravel the evolutionary history of the rhinoceros family
Liu, S., Westbury, M. V., Dussex, N., Mitchell, K. J., Sinding, M. H. S., Heintzman, P. D., Duchêne, D. A., Kapp, J. D., von Seth, J., Heiniger, H., Sánchez-Barreiro, F., Margaryan, A., André-Olsen, R., De Cahsan, B., Meng, G., Yang, C., Chen, L., van der Valk, T., Moodley, Y., Rookmaaker, K. & 19 others, , 2021, In: Cell. 184, 19, p. 4874-4885.e16Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bird lineages colonizing urban habitats have diversified at high rates across deep time
Iglesias-Carrasco, M., Tobias, J. A. & Duchene, David, 2022, In: Global Ecology and Biogeography. 31, 9, p. 1784-1793 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Blue Turns to Gray: Paleogenomic Insights into the Evolutionary History and Extinction of the Blue Antelope (Hippotragus leucophaeus)
Hempel, E., Bibi, F., Faith, J. T., Koepfli, K., Klittich, A. M., Duchene, David, Brink, J. S., Kalthoff, D. C., Dalén, L., Hofreiter, M. & Westbury, Michael Vincent, 2022, In: Molecular Biology and Evolution. 39, 12, 16 p., msac241.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data
Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2024, In: Genome Biology and Evolution. 16, 4, 7 p., evae064.Research output: Contribution to journal › Journal article › Research › peer-review
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ClockstaRX: testing molecular clock hypotheses with genomic data
Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.Research output: Working paper › Preprint
- Published
Complexity of avian evolution revealed by family-level genomes
Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, , 2024, In: Nature. 629, p. 851–860 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ecological Specialization and Evolutionary Reticulation in Extant Hyaenidae
Westbury, Michael Vincent, Le Duc, D., Duchene, David, Krishnan, A., Prost, S., Rutschmann, S., Grau, J. H., Dalén, L., Weyrich, A., Norén, K., Werdelin, L., Dalerum, F., Schöneberg, T. & Hofreiter, M., 2021, In: Molecular Biology and Evolution. 38, 9, p. 3884-3897 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Environmental niche and flight intensity are associated with molecular evolutionary rates in a large avian radiation
Montoya, P., Cadena, C. D., Claramunt, S. & Duchene, David, Dec 2022, In: BMC Ecology and Evolution. 22, 10 p., 95.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary Rate Variation Among Lineages in Gene Trees has a Negative Impact on Species-Tree Inference
Vankan, M., Ho, S. Y. W. & Duchene, David, 2022, In: Systematic Biology. 71, 2, p. 490-500Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Excluding Loci With Substitution Saturation Improves Inferences From Phylogenomic Data
Duchene, David, Mather, N., Van Der Wal, C. & Ho, S. Y. W., 2022, In: Systematic Biology. 71, 3, p. 676-689Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts
Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Duchene, David, Puetz, Lara Christine, Delmont, T. O., Sveier, H., Jørgensen, Louise von Gersdorff, Præbel, K., Martin, M. D., Bojesen, Anders Miki, Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2021, In: Communications Biology. 4, 10 p., 579.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic insights into the evolutionary relationships and demographic history of kiwi
Westbury, Michael Vincent, Westbury, Binia De Cahsan, Shepherd, L. D., Holdaway, R. N., Duchene, David & Lorenzen, Eline, 2022, In: PLoS ONE. 17, 10, 17 p., e0266430.Research output: Contribution to journal › Journal article › Research › peer-review
Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods
Duchene, S., Duchene, David, Geoghegan, J. L., Dyson, Z. A., Hawkey, J. & Holt, K. E., 2018, In: BMC Evolutionary Biology. 18, 11 p., 95.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Leaping through Tree Space: Continuous Phylogenetic Inference for Rooted and Unrooted Trees
Penn, M. J., Scheidwasser, Neil Alexandre, Penn, J., Donnelly, C. A., Duchene, David & Bhatt, Samir, 2023, In: Genome Biology and Evolution. 15, 12, 17 p., evad213.Research output: Contribution to journal › Journal article › Research › peer-review
Linking Branch Lengths across Sets of Loci Provides the Highest Statistical Support for Phylogenetic Inference
Duchene, David, Tong, K. J., Foster, C. S. P., Duchêne, S., Lanfear, R. & Ho, S. Y. W., 2020, In: Molecular Biology and Evolution. 37, 4, p. 1202-1210Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multiple types of genomic variation contribute to adaptive traits in the mustelid subfamily Guloninae
Derežanin, L., Blažytė, A., Dobrynin, P., Duchene, David, Grau, J. H., Jeon, S., Kliver, S., Koepfli, K., Meneghini, D., Preick, M., Tomarovsky, A., Totikov, A., Fickel, J. & Förster, D. W., 2022, In: Molecular Ecology. 31, 10, p. 2898-2919 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
Phylogenetic evidence for recent diversification of obligate coral-dwelling gobies compared with their host corals
Duchene, David, Klanten, S. O., Munday, P. L., Herler, J. & van Herwerden, L., 2013, In: Molecular Phylogenetics and Evolution. 69, 1, p. 123-132Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogenomics
Duchene, David, 11 Oct 2021, In: Current Biology. 31, 19, p. R1177-R1181 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Probing the genomic limits of de-extinction in the Christmas Island rat
Lin, J., Duchene, David, Carøe, C., Smith, O., Ciucani, M. M., Niemann, Jonas, Richmond, D., Greenwood, A. D., MacPhee, R., KU, thw266, Gopalakrishnan, Shyam & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 7, p. 1650-1656.e3Research output: Contribution to journal › Journal article › Research › peer-review
Rates of molecular evolution and diversification in plants: chloroplast substitution rates correlate with species-richness in the Proteaceae
Duchene, David & Bromham, L., 2013, In: BMC Evolutionary Biology. 13, 11 p., 65.Research output: Contribution to journal › Journal article › Research › peer-review
Sex in the city: sexual selection and urban colonization in passerines
Iglesias-Carrasco, M., Duchene, David, Head, M. L., Møller, A. P. & Cain, K., 2019, In: Biology Letters. 15, 9, 4 p., 20190257.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences
Duchene, David, Duchêne, S. & Ho, S. Y. W., 2015, In: Molecular Ecology Resources. 15, 4, p. 785-794Research output: Contribution to journal › Journal article › Research › peer-review
ID: 247671713
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Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
40
downloads
Ancient and modern genomes unravel the evolutionary history of the rhinoceros family
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
17
downloads
Probing the genomic limits of de-extinction in the Christmas Island rat
Research output: Contribution to journal › Journal article › Research › peer-review
Published