Proteomic applications of automated GPCR classification

Research output: Contribution to journalJournal articleResearchpeer-review

Matthew N Davies, David E. Gloriam, Andrew Secker, Alex A Freitas, Miguel Mendao, Jon Timmis, Darren R Flower

The G-protein coupled receptor (GPCR) superfamily fulfils various metabolic functions and interacts with a diverse range of ligands. There is a lack of sequence similarity between the six classes that comprise the GPCR superfamily. Moreover, most novel GPCRs found have low sequence similarity to other family members which makes it difficult to infer properties from related receptors. Many different approaches have been taken towards developing efficient and accurate methods for GPCR classification, ranging from motif-based systems to machine learning as well as a variety of alignment-free techniques based on the physiochemical properties of their amino acid sequences. This review describes the inherent difficulties in developing a GPCR classification algorithm and includes techniques previously employed in this area.
Original languageEnglish
JournalProteomics
Volume7
Issue number16
Pages (from-to)2800-14
Number of pages15
ISSN1615-9853
DOIs
Publication statusPublished - Aug 2007
Externally publishedYes

ID: 45811488