A Geometric Framework for Stochastic Shape Analysis

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Alexis Arnaudon, Darryl D. Holm, Stefan Sommer

We introduce a stochastic model of diffeomorphisms, whose action on a variety of data types descends to stochastic evolution of shapes, images and landmarks. The stochasticity is introduced in the vector field which transports the data in the large deformation diffeomorphic metric mapping framework for shape analysis and image registration. The stochasticity thereby models errors or uncertainties of the flow in following the prescribed deformation velocity. The approach is illustrated in the example of finite-dimensional landmark manifolds, whose stochastic evolution is studied both via the Fokker–Planck equation and by numerical simulations. We derive two approaches for inferring parameters of the stochastic model from landmark configurations observed at discrete time points. The first of the two approaches matches moments of the Fokker–Planck equation to sample moments of the data, while the second approach employs an expectation-maximization based algorithm using a Monte Carlo bridge sampling scheme to optimise the data likelihood. We derive and numerically test the ability of the two approaches to infer the spatial correlation length of the underlying noise.

Original languageEnglish
JournalFoundations of Computational Mathematics
Volume19
Issue number3
Pages (from-to)653–701
Number of pages49
ISSN1615-3375
DOIs
Publication statusPublished - 2019

    Research areas

  • Shape analysis, Stochastic flows of diffeomorphisms, Stochastic geometric mechanics, Stochastic landmark dynamics

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