Jan Gorodkin

Jan Gorodkin

Professor

  • Animal Genetics, Bioinformatics and Breeding

    Thorvaldsensvej 57, 1870 Frederiksberg C, 1-34, Building: A106

    Phone: +45 23 37 56 67Mobile: +45 23 37 56 67

  1. 2019
  2. Published

    A splice-site variant in the lncRNA gene RP1-140A9.1 cosegregates in the large Volkmann cataract family. / Eiberg, Hans; Mikkelsen, Annemette F.; Bak, Mads; Tommerup, Niels; Lund, Allan M.; Wenzel, Anne; Sabarinathan, Radhakrishnan; Gorodkin, Jan; Bang-Berthelsen, Claus H.; Hansen, Lars.

    In: Molecular Vision, Vol. 25, 2019, p. 1-11.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Cytoscape stringApp : Network analysis and visualization of proteomics data. / Doncheva, Nadezhda T; Morris, John; Gorodkin, Jan; Jensen, Lars J.

    In: Journal of Proteome Research, Vol. 18, No. 2, 2019, p. 623-632.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Inferring disease-associated long non-coding RNAs using genome - wide tissue expression profiles. / Pan, Xiaoyong; Jensen, Lars Juhl; Gorodkin, Jan.

    In: Bioinformatics, Vol. 35, No. 9, 2019, p. 1494-1502.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    RNAcentral : a hub of information for non-coding RNA sequences. / The RNAcentral Constortium ; Gorodkin, Jan; Seemann, Ernst Stefan.

    In: Nucleic Acids Research, Vol. 47, No. D1, 2019, p. D221–D229.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Special issue : Computational analysis of RNA structure and function. / Gorodkin, Jan.

    In: Genes, Vol. 10, No. 1, 55, 2019.

    Research output: Contribution to journalEditorialResearch

  7. Published

    The developing Entorhinal Cortex – a cellular map. / Bergmann, Tobias Borgtoft; Liu, Yong; Lee, Julie; Pfisterer, Ulrich Gottfried; Asenjo Martinez, Andrea; Seemann, Ernst Stefan; Pihl, Maria ; Thomsen, Preben Dybdahl; Hyttel, Poul; witter, menno; Khodosevich, Konstantin; Gorodkin, Jan; Pers, Tune H; Hall, Vanessa Jane.

    2019. Abstract from FENS conference: Understanding and targeting Alzheimer's disease, Rungsted, Denmark.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  8. Published

    Transcriptome landscape of protein-coding genes and long noncoding RNAs in the colon and blood of DSS-induced mouse model of Acute ulcerative colitis. / Yarani, R.; Palasca, O.; Doncheva, N. Tsankova; Anthon, C.; Pilecki, B.; Litman, T.; Holmskov, U.; Jensen, L. J.; Gorodkin, J.; Pociot, F.

    In: Journal of Crohn's and Colitis, Vol. 13, 2019, p. S129-S130.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  9. Published

    Uncovering the anatomical and molecular landscape of the starting point of Alzheimer’s disease in the brain. / Bergmann, Tobias Borgtoft; Liu, Yong; Lee, Julie; Pfisterer, Ulrich Gottfried; Asenjo Martinez, Andrea; Seemann, Ernst Stefan; Pihl, Maria ; Thomsen, Preben Dybdahl; Hyttel, Poul; witter, menno; Khodosevich, Konstantin; Gorodkin, Jan; Pers, Tune H; Hall, Vanessa Jane.

    2019. Abstract from FENS conference: Understanding and targeting Alzheimer's disease, Rungsted, Denmark.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  10. E-pub ahead of print

    Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities. / Sundfeld, Daniel; Teodoro, George; Havgaard, Jakob H.; Gorodkin, Jan; Melo, Alba C.M.A.

    In: Concurrency Computation, 2019.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. 2018
  12. Published

    Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures. / Sabarinathan, Radhakrishnan; Anthon, Christian; Gorodkin, Jan; Seemann, Stefan E.

    In: Genes, Vol. 9, No. 12, 604, 04.12.2018.

    Research output: Contribution to journalJournal articleResearchpeer-review

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