Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima

Research output: Contribution to journal › Journal article › Research › peer-review

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Structural analysis of DNA sequence : evidence for lateral gene transfer in Thermotoga maritima. / Worning, Peder; Jensen, L J; Nelson, K E; Brunak, S; Ussery, David.

In: Nucleic Acids Research, Vol. 28, No. 3, 2000, p. 706-9.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Worning, P, Jensen, LJ, Nelson, KE, Brunak, S & Ussery, D 2000, 'Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima', Nucleic Acids Research, vol. 28, no. 3, pp. 706-9.

APA

Worning, P., Jensen, L. J., Nelson, K. E., Brunak, S., & Ussery, D. (2000). Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima. Nucleic Acids Research, 28(3), 706-9.

Vancouver

Worning P, Jensen LJ, Nelson KE, Brunak S, Ussery D. Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima. Nucleic Acids Research. 2000;28(3):706-9.

Author

Worning, Peder ; Jensen, L J ; Nelson, K E ; Brunak, S ; Ussery, David. / Structural analysis of DNA sequence : evidence for lateral gene transfer in Thermotoga maritima. In: Nucleic Acids Research. 2000 ; Vol. 28, No. 3. pp. 706-9.

Bibtex

@article{f63df69557c24ad3b58aa482c14881bf,
title = "Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima",
abstract = "The recently published complete DNA sequence of the bacterium Thermotoga maritima provides evidence, based on protein sequence conservation, for lateral gene transfer between Archaea and Bacteria. We introduce a new method of periodicity analysis of DNA sequences, based on structural parameters, which brings independent evidence for the lateral gene transfer in the genome of T.maritima. The structural analysis relates the Archaea-like DNA sequences to the genome of Pyrococcus horikoshii. Analysis of 24 complete genomic DNA sequences shows different periodicity patterns for organisms of different origin. The typical genomic periodicity for Bacteria is 11 bp whilst it is 10 bp for Archaea. Eukaryotes have more complex spectra but the dominant period in the yeast Saccharomyces cerevisiae is 10.2 bp. These periodicities are most likely reflective of differences in chromatin structure.",
author = "Peder Worning and Jensen, {L J} and Nelson, {K E} and S Brunak and David Ussery",
year = "2000",
language = "English",
volume = "28",
pages = "706--9",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "3",

}

RIS

TY - JOUR

T1 - Structural analysis of DNA sequence

T2 - evidence for lateral gene transfer in Thermotoga maritima

AU - Worning, Peder

AU - Jensen, L J

AU - Nelson, K E

AU - Brunak, S

AU - Ussery, David

PY - 2000

Y1 - 2000

N2 - The recently published complete DNA sequence of the bacterium Thermotoga maritima provides evidence, based on protein sequence conservation, for lateral gene transfer between Archaea and Bacteria. We introduce a new method of periodicity analysis of DNA sequences, based on structural parameters, which brings independent evidence for the lateral gene transfer in the genome of T.maritima. The structural analysis relates the Archaea-like DNA sequences to the genome of Pyrococcus horikoshii. Analysis of 24 complete genomic DNA sequences shows different periodicity patterns for organisms of different origin. The typical genomic periodicity for Bacteria is 11 bp whilst it is 10 bp for Archaea. Eukaryotes have more complex spectra but the dominant period in the yeast Saccharomyces cerevisiae is 10.2 bp. These periodicities are most likely reflective of differences in chromatin structure.

AB - The recently published complete DNA sequence of the bacterium Thermotoga maritima provides evidence, based on protein sequence conservation, for lateral gene transfer between Archaea and Bacteria. We introduce a new method of periodicity analysis of DNA sequences, based on structural parameters, which brings independent evidence for the lateral gene transfer in the genome of T.maritima. The structural analysis relates the Archaea-like DNA sequences to the genome of Pyrococcus horikoshii. Analysis of 24 complete genomic DNA sequences shows different periodicity patterns for organisms of different origin. The typical genomic periodicity for Bacteria is 11 bp whilst it is 10 bp for Archaea. Eukaryotes have more complex spectra but the dominant period in the yeast Saccharomyces cerevisiae is 10.2 bp. These periodicities are most likely reflective of differences in chromatin structure.

M3 - Journal article

C2 - 10637321

VL - 28

SP - 706

EP - 709

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - 3

ER -

ID: 40749918