Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data

Research output: Contribution to journalJournal articleResearchpeer-review

Standard

Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data. / Kinalis, Savvas; Nielsen, Finn Cilius; Winther, Ole; Bagger, Frederik Otzen.

In: BMC Bioinformatics, Vol. 20, 379, 2019.

Research output: Contribution to journalJournal articleResearchpeer-review

Harvard

Kinalis, S, Nielsen, FC, Winther, O & Bagger, FO 2019, 'Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data', BMC Bioinformatics, vol. 20, 379. https://doi.org/10.1186/s12859-019-2952-9

APA

Kinalis, S., Nielsen, F. C., Winther, O., & Bagger, F. O. (2019). Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data. BMC Bioinformatics, 20, [379]. https://doi.org/10.1186/s12859-019-2952-9

Vancouver

Kinalis S, Nielsen FC, Winther O, Bagger FO. Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data. BMC Bioinformatics. 2019;20. 379. https://doi.org/10.1186/s12859-019-2952-9

Author

Kinalis, Savvas ; Nielsen, Finn Cilius ; Winther, Ole ; Bagger, Frederik Otzen. / Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data. In: BMC Bioinformatics. 2019 ; Vol. 20.

Bibtex

@article{2bfca381b48b450e8ca8dcd8e89d2045,
title = "Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data",
keywords = "Interpretable machine learning, Deep learning, Neural networks, Manifold learning, Expression profiles, Single-cell RNA-sequencing, Gene set enrichment analysis, Functional analysis, Biological pathway analysis",
author = "Savvas Kinalis and Nielsen, {Finn Cilius} and Ole Winther and Bagger, {Frederik Otzen}",
year = "2019",
doi = "10.1186/s12859-019-2952-9",
language = "English",
volume = "20",
journal = "B M C Bioinformatics",
issn = "1471-2105",
publisher = "BioMed Central Ltd.",

}

RIS

TY - JOUR

T1 - Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data

AU - Kinalis, Savvas

AU - Nielsen, Finn Cilius

AU - Winther, Ole

AU - Bagger, Frederik Otzen

PY - 2019

Y1 - 2019

KW - Interpretable machine learning

KW - Deep learning

KW - Neural networks

KW - Manifold learning

KW - Expression profiles

KW - Single-cell RNA-sequencing

KW - Gene set enrichment analysis

KW - Functional analysis

KW - Biological pathway analysis

U2 - 10.1186/s12859-019-2952-9

DO - 10.1186/s12859-019-2952-9

M3 - Journal article

C2 - 31286861

VL - 20

JO - B M C Bioinformatics

JF - B M C Bioinformatics

SN - 1471-2105

M1 - 379

ER -

ID: 225833652