A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation
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A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation. / Hägglund, Per; Bunkenborg, Jakob; Elortza, Felix; Jensen, Ole Nørregaard; Roepstorff, Peter.
In: Journal of Proteome Research, Vol. 3, No. 3, 01.05.2004, p. 556-566.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation
AU - Hägglund, Per
AU - Bunkenborg, Jakob
AU - Elortza, Felix
AU - Jensen, Ole Nørregaard
AU - Roepstorff, Peter
PY - 2004/5/1
Y1 - 2004/5/1
N2 - Characterization of glycoproteins using mass spectrometry ranges from determination of carbohydrate-protein linkages to the full characterization of all glycan structures attached to each glycosylation site. In a novel approach to identify N-glycosylation sites in complex biological samples, we performed an enrichment of glycosylated peptides through hydrophilic interaction liquid chromatography (HILIC) followed by partial deglycosylation using a combination of endo-β-N-acetylglucosaminidases (EC 3.2.1.96). After hydrolysis with these enzymes, a single N-acetylglucosamine (GlcNAc) residue remains linked to the asparagine residue. The removal of the major part of the glycan simplifies the MS/MS fragment ion spectra of glycopeptides, while the remaining GlcNAc residue enables unambiguous assignment of the glycosylation site together with the amino acid sequence. We first tested our approach on a mixture of known glycoproteins, and subsequently the method was applied to samples of human plasma obtained by lectin chromatography followed by 1D gel-electrophoresis for determination of 62 glycosylation sites in 37 glycoproteins.
AB - Characterization of glycoproteins using mass spectrometry ranges from determination of carbohydrate-protein linkages to the full characterization of all glycan structures attached to each glycosylation site. In a novel approach to identify N-glycosylation sites in complex biological samples, we performed an enrichment of glycosylated peptides through hydrophilic interaction liquid chromatography (HILIC) followed by partial deglycosylation using a combination of endo-β-N-acetylglucosaminidases (EC 3.2.1.96). After hydrolysis with these enzymes, a single N-acetylglucosamine (GlcNAc) residue remains linked to the asparagine residue. The removal of the major part of the glycan simplifies the MS/MS fragment ion spectra of glycopeptides, while the remaining GlcNAc residue enables unambiguous assignment of the glycosylation site together with the amino acid sequence. We first tested our approach on a mixture of known glycoproteins, and subsequently the method was applied to samples of human plasma obtained by lectin chromatography followed by 1D gel-electrophoresis for determination of 62 glycosylation sites in 37 glycoproteins.
KW - Endoglycosidase
KW - Glycosylation
KW - HILIC
KW - Lectin affinity chromatography
KW - Mass spectrometry
KW - Plasma proteins
KW - Post-translational modifications
KW - Proteomics
UR - http://www.scopus.com/inward/record.url?scp=4444269089&partnerID=8YFLogxK
U2 - 10.1021/pr034112b
DO - 10.1021/pr034112b
M3 - Journal article
C2 - 15253437
AN - SCOPUS:4444269089
VL - 3
SP - 556
EP - 566
JO - Journal of Proteome Research
JF - Journal of Proteome Research
SN - 1535-3893
IS - 3
ER -
ID: 240161809