Nikos Hatzakis
Professor
Department of Chemistry
Universitetsparken 5
2100 København Ø
- 2024
- Published
Neonatal intestinal mucus barrier changes in response to maturity, inflammation, and sodium decanoate supplementation
Mortensen, Janni Støvring, Bohr, S. S. R., Krog, Lasse Skjoldborg, Bøtker, Johan Peter, Kapousidou, V., Saaby, Lasse, Hatzakis, Nikos, Nielsen, Hanne Mørck, Nguyen, Duc Ninh & Rønholt, Stine, 2024, In: Scientific Reports. 14, 1, 17 p., 7665.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Probing Activation and Conformational Dynamics of the Vesicle-Reconstituted β2 Adrenergic Receptor at the Single-Molecule Level
Tutkus, M., Lundgaard, C. V., Veshaguri, S., Tønnesen, A., Hatzakis, Nikos, Rasmussen, Søren Gøgsig Faarup & Stamou, Dimitrios, 2024, In: Journal of Physical Chemistry B. 128, 9, p. 2124–2133 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Protein Tracking: Everything, everywhere, almost at once
Kæstel-Hansen, Jacob & Hatzakis, Nikos, 2024, In: eLife. 13, 3 p., e95362.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
SEMORE: SEgmentation and MORphological fingErprinting by machine learning automates super-resolution data analysis
Bender, S. W. B., Dreisler, M. W., Zhang, Min, Kæstel-Hansen, Jacob & Hatzakis, Nikos, 2024, In: Nature Communications. 15, 1, 13 p., 1763.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Dimensional Reduction for Single-Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67
Benning, N. A., Kæstel-Hansen, Jacob, Rashid, F., Park, S., Urteaga, R. M., Liao, T., Hao, J., Berger, J. M., Hatzakis, Nikos & Ha, T., 2023, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 127, 9, p. 1922–1931 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Direct observation and classification of heterogeneous protein aggregation in real-time through super-resolution and aggregational fingerprinting
Bender, S., Kæstel-Hansen, Jacob, Zhang, Min & Hatzakis, Nikos, 2023, In: Biophysical Journal. 122, 3 Supplement 1, p. 16a 1 p.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Enhanced hexamerization of insulin via assembly pathway rerouting revealed by single particle studies
Bohr, Freja Schmidt-Rasmussen, Bohr, S. S. R., Mishra, N. K., González-Foutel, N. S., Pinholt, H. D., Wu, S., Nielsen, E. M., Zhang, Min, Kjaergaard, M., Jensen, Knud Jørgen & Hatzakis, Nikos, 2023, In: Communications Biology . 6, 1, 14 p., 178.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heterogeneous and Surface-Catalyzed Amyloid Aggregation Monitored by Spatially Resolved Fluorescence and Single Molecule Microscopy
Zhou, X., Sinkjær, Anders Wilgaard, Zhang, Min, Pinholt, H. D., Nielsen, Hanne Mørck, Hatzakis, Nikos, van de Weert, Marco & Foderà, Vito, 2023, In: The Journal of Physical Chemistry Letters. 14, 4, p. 912-919Research output: Contribution to journal › Journal article › Research › peer-review
- Published
In vitro and in vivo immunogenicity assessment of protein aggregate characteristics
Thorlaksen, C., Schultz, H. S., Gammelgaard, S. K., Jiskoot, W., Hatzakis, Nikos, Nielsen, F. S., Solberg, H., Foderà, Vito, Bartholdy, C. & Groenning, M., 2023, In: International Journal of Pharmaceutics. 631, 122490.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Making the undetectable detectable: Pushing limits of biomolecular recognition by ultra-sensitive multiplexed single-particle liposome readouts
Hatzakis, Nikos, 2023, In: Biophysical Journal. 122, 3 Supplement 1, p. 231a-232a 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rapid extraction of time-dependent behaviors of endo-lysosomal structures and their cargo aided by deep learning
Kæstel-Hansen, Jacob, Kreutzberger, A., Kirchhausen, T. & Hatzakis, Nikos, 2023, In: Biophysical Journal. 122, 3 Supplement 1, p. 517a 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Realizing integration in structural biology: The 2022 ISBUC Annual Meeting
Kragelund, Birthe Brandt, Loland, Claus Juul, Montoya, Guillermo, Hatzakis, Nikos, Martinez, Karen Laurence, Gajhede, Michael, Christensen, Caspar Elo & Holt, Lucy, 2023, In: Structure. 31, 7, p. 747-754Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-Particle Tracking of Thermomyces lanuginosus Lipase Reveals How Mutations in the Lid Region Remodel Its Diffusion
Iversen, J. F., Bohr, S. S. R., Pinholt, H. D., Moses, M. E., Iversen, L., Christensen, S. M., Hatzakis, Nikos & Zhang, Min, 2023, In: Biomolecules. 13, 4, 11 p., 631.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
Biased metabolism via small-molecule ligands binding to P450 oxidoreductase
Hatzakis, Nikos, Jensen, S. B., Thodberg, S., Parween, S., Moses, M. E., Hansen, C. C., Knudsen, C., Giudice, R. D., Lund, P. M., Castano, P., Bustamante, Y. G., Jorgennsen, F. S., Pandey, A. V., Laursen, Tomas & Møller, Birger Lindberg, 1 Feb 2022, In: Biophysical Journal. 121, 3, p. 52a 1 p., 250-Pos.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories
Goetz, M., Barth, A., Bohr, S. S-R., Boerner, R., Chen, J., Cordes, T., Erie, D. A., Gebhardt, C., Hadzic, M. C. A. S., Hamilton, G. L., Hatzakis, N. S., Hugel, T., Kisley, L., Lamb, D. C., de Lannoy, C., Mahn, C., Dunukara, D., de Ridder, D., Sanabria, H., Schimpf, J. & 9 others, , 2022, In: Nature Communications. 13, 1, 12 p., 5402.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Direct observation of heterogeneous formation of amyloid spherulites in real-time by super-resolution microscopy
Zhang, Min, Pinholt, H., Zhou, X., Bohr, S., Banetta, L., Zaccone, A., Foderà, Vito & Hatzakis, Nikos, 2022, In: Communications Biology . 5, 1, 10 p., 850.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Direct observations of drug nanocarrier interactions and mobility within biological interfaces
Bohr, S. S. R., Streck, S., Pinholt, H., Wan, F., Mcdowell, A., Nielsen, Hanne Mørck & Hatzakis, Nikos, 2022, In: Biophysical Journal. 121, 3, p. 72a-73a 2 p., 355-Pos.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Morphological integrity of insulin amyloid-like aggregates depends on preparation methods and post-production treatments
Thorlaksen, C., Stanciu, A., Neergaard, M. B., Hatzakis, Nikos, Foderà, Vito & Groenning, M., 2022, In: European Journal of Pharmaceutics and Biopharmaceutics. 179, p. 147-155 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physical and barrier changes in gastrointestinal mucus induced by the permeation enhancer sodium 8-[(2-hydroxybenzoyl)amino]octanoate (SNAC)
Mortensen, Janni Støvring, Bohr, S. S. R., Rønholt, Stine, Hatzakis, Nikos, Saaby, Lasse & Nielsen, Hanne Mørck, 2022, In: Journal of Controlled Release. 352, p. 163-178 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Robust Dual Optical Sensor for pH and Dissolved Oxygen
Wang, L., Jensen, K., Hatzakis, Nikos, Zhang, Min & Sørensen, Thomas Just, 2022, In: ACS Sensors. 7, 5, p. 1506–1513Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single Vesicle Fluorescence-Bleaching Assay for Multi-Parameter Analysis of Proteoliposomes by Total Internal Reflection Fluorescence Microscopy
Veit, S., Paweletz, L. C., Bohr, S. S., Menon, A. K., Hatzakis, Nikos & Pomorski, Thomas Guenther, 2022, In: ACS applied materials & interfaces. 14, 26, p. 29659−29667 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-particle combinatorial multiplexed liposome fusion mediated by DNA
Malle, M., Loffler, P., Bohr, S. S., Sletfjerding, M., Risgaard, N., Jensen, S., Zhang, Min, Hedegård, Per, Vogel, S. & Hatzakis, Nikos, 2022, In: Nature Chemistry. 14, 5, p. 558–565 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The dopamine transporter antiports potassium to increase the uptake of dopamine
Schmidt, S. G., Malle, M. G., Nielsen, A. K., Bohr, S. S., Pugh, Ciara Frances, Nielsen, Jeppe Cederholm, Poulsen, I. H., Rand, Kasper Dyrberg, Hatzakis, Nikos & Loland, Claus Juul, 2022, In: Nature Communications. 13, 1, 12 p., 2446.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Biased cytochrome P450-mediated metabolism via small-molecule ligands binding P450 oxidoreductase
Jensen, S. B., Thodberg, S., Parween, S., Moses, M. E., Hansen, Cecilie Ida Cetti, Thomsen, J., Sletfjerding, M. B., Knudsen, C., Del Giudice, R., Lund, P. M., Castaño, P. R., Bustamante, Y. G., Velazquez, M. N. R., Jørgensen, Flemming Steen, Pandey, A. V., Laursen, Tomas, Møller, Birger Lindberg & Hatzakis, Nikos, 2021, In: Nature Communications. 12, 1, 14 p., 2260.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Carbohydrate-Derived Metal-Chelator-Triggered Lipids for Liposomal Drug Delivery
Holmstrøm, T., Galsgaard Malle, M., Wu, S., Jensen, Knud Jørgen, Hatzakis, Nikos & Pedersen, Christian Marcus, 2021, In: Chemistry - A European Journal. 27, 23, p. 6917-6922 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Direct Observation of Anisotropy-Driven Formation of Amyloid Spherulites in Real-time by Super-resolution Microscopy
Zhang, Min, Pinholt, H., Zhou, X., Bohr, S., Banetta, L., Zaccone, A., Foderà, Vito & Hatzakis, Nikos, 2021, 19 p.Research output: Working paper › Preprint › Research
- Published
FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices
Lerner, E., Barth, A., Hendrix, J., Ambrose, B., Birkedal, V., Blanchard, S. C., Börner, R., Chung, H. S., Cordes, T., Craggs, T. D., Deniz, A. A., Diao, J., Fei, J., Gonzalez, R. L., Gopich, I. V., Ha, T., Hanke, C. A., Haran, G., Hatzakis, N. S., Hohng, S. & 27 others, , 2021, In: eLife. 10, 69 p., e60416.Research output: Contribution to journal › Review › Research › peer-review
- Published
Interactions of Cell-Penetrating Peptide-Modified Nanoparticles with Cells Evaluated Using Single Particle Tracking
Streck, S., Bohr, S. S., Birch, D., Rades, Thomas, Hatzakis, Nikos, McDowell, A. & Nielsen, Hanne Mørck, 2021, In: ACS Applied Bio Materials. 4, 4, p. 3155-3165 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-Molecule Study of Thermomyces lanuginosus Lipase in a Detergency Application System Reveals Diffusion Pattern Remodeling by Surfactants and Calcium
Moses, M. E., Lund, P. M., Bohr, S. S., Iversen, J. F., Kæstel-Hansen, J., Kallenbach, A. S., Iversen, L., Christensen, S. M. & Hatzakis, Nikos, 2021, In: A C S Applied Materials and Interfaces. 13, 28, 9 p., 33704.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-particle diffusional fingerprinting: A machine-learning framework for quantitative analysis of heterogeneous diffusion
Pinholt, H. D., Bohr, S. S. R., Iversen, J. F., Boomsma, Wouter & Hatzakis, Nikos, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 31, 7 p., e2104624118.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
DeepFRET, a software for rapid and automated single-molecule FRET data classification using deep learning
Thomsen, J., Sletfjerding, M. B., Jensen, S. B., Stella, S., Paul, B., Malle, M. G., Montoya, Guillermo, Petersen, Troels Christian & Hatzakis, Nikos, Nov 2020, In: eLife. 9, 21 p., e60404.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Label-Free Fluorescence Quantification of Hydrolytic Enzyme Activity on Native Substrates Reveals How Lipase Function Depends on Membrane Curvature
Bohr, S. S., Thorlaksen, C., Kühnel, R. M., Pomorski, Thomas Guenther & Hatzakis, Nikos, 16 Jun 2020, In: Langmuir. 36, 23, p. 6473-6481 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Direct Observation of CRISPR-Cas12 Conformational Sampling by SM FRET and Cryo EM Reveals how Conformational Activation Promotes Catalysis and Resetting of the Endonuclease Activity
Stella, S., Mesa, Pablo, Thomsen, J., Paul, B., Alcon, P., Jensen, S. B., Moses, M. E., Montoya, Guillermo & Hatzakis, Nikos, 7 Feb 2020, In: Biophysical Journal. 118, 3, p. 223A-224A 2 p.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
Direct Observation of Sophorolipid Micelle Docking in Model Membranes and Cells by Single Particle Studies Reveals Optimal Fusion Conditions
Singh, P. K., Bohr, S. S. & Hatzakis, Nikos, 2020, In: Biomolecules. 10, 9, 16 p., 1291.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
How Membrane Geometry Regulates Protein Sorting Independently of Mean Curvature
Larsen, J. B., Rosholm, K. R., Kennard, C., Pedersen, S. L., Munch, H. K., Tkach, Vadym, Sakon, J. J., Bjornholm, T., Weninger, K. R., Bendix, Poul Martin, Jensen, Knud Jørgen, Hatzakis, Nikos, Uline, M. J. & Stamou, Dimitrios, 2020, In: ACS Central Science. 6, 7, p. 1159-1168 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ultrasmall TPGS-PLGA Hybrid Nanoparticles for Site-Specific Delivery of Antibiotics into Pseudomonas aeruginosa Biofilms in Lungs
Wan, F., Bohr, S. S. R., Kłodzińska, S. N., Jumaa, H., Huang, Z., Nylander, T., Thygesen, Mikkel Boas, Sørensen, K. K., Jensen, Knud Jørgen, Sternberg, C., Hatzakis, Nikos & Nielsen, Hanne Mørck, 2020, In: ACS Applied Materials and Interfaces. 12, p. 380-389Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
A large size-selective DNA nanopore with sensing applications
Thomsen, R. P., Malle, M. G., Okholm, A. H., Krishnan, S., Bohr, S. S., Sørensen, R. S., Ries, O., Vogel, S., Simmel, F. C., Hatzakis, Nikos & Kjems, J., 2019, In: Nature Communications. 10, 1Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Direct observation of Thermomyces lanuginosus lipase diffusional states by Single Particle Tracking and their remodeling by mutations and inhibition
Bohr, S. S., Lund, P. M., Kallenbach, A. S., Pinholt, H., Thomsen, J., Iversen, L., Svendsen, A., Christensen, S. M. & Hatzakis, Nikos, 2019, In: Scientific Reports. 9, 11 p., 16169.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Half-Life Extending Modifications of Peptide YY3-36 Direct Receptor-Mediated Internalization
Bech, E. M., Kaiser, A., Bellmann-Sickert, K., Nielsen, S. S., Sørensen, K. K., Elster, L., Hatzakis, Nikos, Pedersen, S. L., Beck-Sickinger, A. G. & Jensen, Knud Jørgen, 2019, In: Molecular Pharmaceutics. 16, 8, p. 3665-3677Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single Liposome Measurements for the Study of Proton-Pumping Membrane Enzymes Using Electrochemistry and Fluorescent Microscopy
Mazurenko, I., Hatzakis, Nikos & Jeuken, L. J. C., 2019, In: Journal of Visualized Experiments. 144Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Conformational Activation Promotes CRISPR-Cas12a Catalysis and Resetting of the Endonuclease Activity
Stella, S., Mesa, Pablo, Thomsen, J., Paul, B., Alcón, P., Jensen, S. B., Saligram, B., Moses, M. E., Hatzakis, Nikos & Montoya, Guillermo, 13 Dec 2018, In: Cell. 175, 7, p. 1856-1871.e21 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Direct observation of multiple conformational states in Cytochrome P450 oxidoreductase and their modulation by membrane environment and ionic strength
Bavishi, K., Li, D., Eiersholt, S., Hooley, E. N., Petersen, Troels Christian, Møller, Birger Lindberg, Hatzakis, Nikos & Laursen, Tomas, 2018, In: Scientific Reports. 8, 9 p., 6817.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Functionalized Gold Nanoclusters Identify Highly Reactive Oxygen Species in Living Organisms
Xie, Y., Xianyu, Y., Wang, N., Yan, Z., Liu, Y., Zhu, K., Hatzakis, Nikos & Jiang, X., 2018, In: Advanced Functional Materials. 28, 14, 7 p., 1702026.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Membrane curvature regulates ligand-specific membrane sorting of GPCRs in living cells
Rosholm, K. R., Leijnse, Natascha, Mantsiou, A., Tkach, Vadym, Pedersen, S. L., Wirth, V. F., Oddershede, L. B., Jensen, Knud Jørgen, Martinez, Karen Laurence, Hatzakis, Nikos, Bendix, Poul Martin, Callan-Jones, A. & Stamou, Dimitrios, 8 May 2017, In: Nature Chemical Biology. 13, 7, p. 724-729Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of membrane curvature and pH on proton pumping activity of single cytochrome bo3 enzymes
Li, M., Khan, S., Rong, H., Tuma, R., Hatzakis, Nikos & Jeuken, L. J. C., 2017, In: Biochimica et Biophysica Acta - Bioenergetics. 1858, 9, p. 763-770Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Membrane Curvature and Lipid Composition Synergize To Regulate N-Ras Anchor Recruitment
Larsen, J. B., Kennard, C., Pedersen, S. L., Jensen, Knud Jørgen, Uline, M. J., Hatzakis, Nikos & Stamou, Dimitrios, 2017, In: Biophysical Journal. 113, 6, p. 1269-1279 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
Characterization of a dynamic metabolon producing the defense compound dhurrin in sorghum
Laursen, Tomas, Borch-Jensen, J., Baden, C. K., Bavishi, K., Torta, F., Martens, Helle Jakobe, Silvestro, D., Hatzakis, Nikos, Wenk, M. R., Dafforn, T. R., Olsen, C. E., Motawie, Mohammed Saddik, Hamberger, B. R., Møller, Birger Lindberg & Bassard, J. A., 2016, In: Science (New York, N.Y.). 354, 6314, p. 890-893 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Direct observation of proton pumping by a eukaryotic P-type ATPase
Veshaguri, S., Christensen, S. F., Kemmer, G. C., Ghale, G., Møller, M. P., Lohr, C., Christensen, A. L., Justesen, B. H., Jørgensen, I. L., Schiller, J., Hatzakis, Nikos, Grabe, M., Pomorski, Thomas Guenther & Stamou, Dimitrios, 2016, In: Science. 351, 6280, p. 1469-1473 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Links of conformational sampling to functional plasticity and clinical phenotypes by single molecule studies
Moses, M. E., Thodberg, S., Bavishi, K., Eiersholt, S., Li, D., Stamou, Dimitrios, Møller, Birger Lindberg, Laursen, Tomas & Hatzakis, Nikos, 2016, In: Biophysical Society. Annual Meeting. Abstracts. 110, 3, p. 397A 1 p.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
N-RAS lipid anchor adsorption to membranes as a function of lipid composition and curvature
Larsen, J. B., Kennard, C., Pedersen, S. L., Jensen, Knud Jørgen, Hatzakis, Nikos, Uline, M. J. & Stamou, Dimitrios, 2016, In: Biophysical Society. Annual Meeting. Abstracts. 110, 3, p. 579A 1 p.Research output: Contribution to journal › Conference abstract in journal › Research
ID: 6090
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Insights in enzyme functional dynamics and activity regulation by single molecule studies
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Single enzyme experiments reveal a long-lifetime proton leak state in a heme-copper oxidase
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Links of conformational sampling to functional plasticity and clinical phenotypes by single molecule studies
Research output: Contribution to journal › Conference abstract in journal › Research
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