Matthias Mann

Matthias Mann

Research director, professor


  1. 2020
  2. E-pub ahead of print

    Limited Environmental Serine and Glycine Confer Brain Metastasis Sensitivity to PHGDH Inhibition

    Ngo, B., Kim, E., Osorio-Vasquez, V., Doll, S., Bustraan, S., Liang, R. J., Luengo, A., Davidson, S. M., Ali, A., Ferraro, G. B., Fischer, G. M., Eskandari, R., Kang, D. S., Ni, J., Plasger, A., Rajasekhar, V. K., Kastenhuber, E. R., Bacha, S., Sriram, R. K., Stein, B. D., Bakhoum, S. F., Snuderl, M., Cotzia, P., Healey, J. H., Mainolfi, N., Suri, V., Friedman, A., Manfredi, M., Sabatini, D. M., Jones, D. R., Yu, M., Zhao, J. J., Jain, R. K., Keshari, K. R., Davies, M. A., Vander Heiden, M. G., Hernando, E., Mann, Matthias, Cantley, L. C. & Pacold, M. E., 22 Jun 2020, In : Cancer Discovery.

    Research output: Contribution to journalJournal articleResearch

  3. E-pub ahead of print

    The proteome landscape of the kingdoms of life

    Müller, J. B., Geyer, P. E., Colaço, A. R., Treit, P. V., Strauss, M. T., Oroshi, M., Doll, S., Virreira Winter, S., Bader, J. M., Köhler, N., Theis, F., Santos, A. & Mann, Matthias, 17 Jun 2020, In : Nature.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Atomic-resolution mapping of transcription factor-DNA interactions by femtosecond laser crosslinking and mass spectrometry

    Reim, A., Ackermann, R., Font-Mateu, J., Kammel, R., Beato, M., Nolte, S., Mann, Matthias, Russmann, C. & Wierer, M., 15 Jun 2020, In : Nature Communications. 11, 1, p. 3019

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Fam20C regulates protein secretion by Cab45 phosphorylation

    Hecht, T. K., Blank, B., Steger, M., Lopez, V., Beck, G., Ramazanov, B., Mann, Matthias, Tagliabracci, V. & von Blume, J., 1 Jun 2020, In : The Journal of Cell Biology. 219, 6

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Sequencing of the First Draft of the Human Acetylome

    Choudhary, Chuna Ram & Mann, Matthias, 1 Jun 2020, In : Clinical Chemistry. 66, 6, p. 852-853 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    STAT3-dependent analysis reveals PDK4 as independent predictor of recurrence in prostate cancer

    Oberhuber, M., Pecoraro, M., Rusz, M., Oberhuber, G., Wieselberg, M., Haslinger, P., Gurnhofer, E., Schlederer, M., Limberger, T., Lagger, S., Pencik, J., Kodajova, P., Högler, S., Stockmaier, G., Grund-Gröschke, S., Aberger, F., Bolis, M., Theurillat, J., Wiebringhaus, R., Weiss, T., Haitel, A., Brehme, M., Wadsak, W., Griss, J., Mohr, T., Hofer, A., Jäger, A., Pollheimer, J., Egger, G., Koellensperger, G., Mann, Matthias, Hantusch, B. & Kenner, L., Apr 2020, In : Molecular Systems Biology. 16, 4, p. e9247

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver

    Cavalli, M., Diamanti, K., Pan, G., Spalinskas, R., Kumar, C., Deshmukh, Atul Shahaji, Mann, Matthias, Sahlén, P., Komorowski, J. & Wadelius, C., 16 Mar 2020, In : O M I C S: A Journal of Integrative Biology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Pervasive functional translation of noncanonical human open reading frames

    Chen, J., Brunner, A., Cogan, J. Z., Nuñez, J. K., Fields, A. P., Adamson, B., Itzhak, D. N., Li, J. Y., Mann, Matthias, Leonetti, M. D. & Weissman, J. S., 6 Mar 2020, In : Science (New York, N.Y.). 367, 6482, p. 1140-1146 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Role for ribosome-associated quality control in sampling proteins for MHC class I-mediated antigen presentation

    Trentini, D. B., Pecoraro, M., Tiwary, S., Cox, J., Mann, Matthias, Hipp, M. S. & Hartl, F. U., 25 Feb 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 8, p. 4099-4108 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Quantitative and Dynamic Catalogs of Proteins Released during Apoptotic and Necroptotic Cell Death

    Tanzer, M. C., Frauenstein, A., Stafford, C. A., Phulphagar, K., Mann, Matthias & Meissner, F., 28 Jan 2020, In : Cell Reports. 30, 4, p. 1260-1270.e5

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts

    Vasilopoulou, C. G., Sulek, Karolina, Brunner, A., Meitei, N. S., Schweiger-Hufnagel, U., Meyer, S. W., Barsch, A., Mann, Matthias & Meier, F., 16 Jan 2020, In : Nature Communications. 11, 1, p. 331

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    A streamlined mass spectrometry-based proteomics workflow for large scale FFPE tissue analysis

    Coscia, Fabian, Doll, S., Bech, Jacob Mathias, Schweizer, L., Mund, Andreas, Lengyel, E., Lindebjerg, J., Madsen, G. I., Moreira, José & Mann, Matthias, 2020, In : Journal of Pathology. 251, p. 110-112

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Proteome profiling in cerebrospinal fluid reveals novel biomarkers of Alzheimer's disease

    Bader, J. M., Geyer, P. E., Müller, J. B., Strauss, M. T., Koch, M., Leypoldt, F., Koertvelyessy, P., Bittner, D., Schipke, C. G., Incesoy, E. I., Peters, O., Deigendesch, N., Simons, M., Jensen, Majken Karoline, Zetterberg, H. & Mann, Matthias, 2020, In : Molecular Systems Biology. 16, 6, 17 p., e9356.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    SHP1 regulates a STAT6-ITGB3 axis in FLT3ITD-positive AML cells

    Reich, D., Kresinsky, A., Müller, J. P., Bauer, R., Kallenbach, J., Schnoeder, T. M., Heidel, F. H., Fässler, R., Mann, Matthias, Böhmer, F. & Jayavelu, A. K., 2020, In : Leukemia. 34, p. 1444-1449

    Research output: Contribution to journalComment/debateResearch

  16. 2019
  17. A mass spectrometry guided approach for the identification of novel vaccine candidates in gram-negative pathogens

    Hornburg, D., Kruse, T., Anderl, F., Daschkin, C., Semper, R. P., Klar, K., Guenther, A., Mejías-Luque, R., Schneiderhan-Marra, N., Mann, Matthias, Meissner, F. & Gerhard, M., 22 Nov 2019, In : Scientific Reports. 9, 1, p. 17401

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Defective glycosylation and multisystem abnormalities characterize the primary immunodeficiency XMEN disease

    Ravell, J. C., Matsuda-Lennikov, M., Chauvin, S. D., Zou, J., Biancalana, M., Deeb, S. J., Price, S., Su, H. C., Notarangelo, G., Jiang, P., Morawski, A., Kanellopoulou, C., Binder, K. W., Mukherjee, R., Anibal, J. T., Sellers, B., Zheng, L., He, T., George, A. B., Pittaluga, S., Powers, A., Kleiner, D. E., Kapuria, D., Ghany, M., Hunsberger, S., Cohen, J. I., Uzel, G., Bergerson, J., Wolfe, L., Toro, C., Gahl, W., Folio, L. R., Matthews, H., Angelus, P., Chinn, I. K., Orange, J. S., Trujillo-Vargas, C. M., Franco, J. L., Orrego-Arango, J., Gutiérrez-Hincapié, S., Patel, N. C., Raymond, K., Patiroglu, T., Unal, E., Karakukcu, M., Day, A. G., Mehta, P., Masutani, E., De Ravin, S. S., Malech, H. L., Altan-Bonnet, G., Rao, V. K., Mann, Matthias & Lenardo, M. J., 5 Nov 2019, In : The Journal of Clinical Investigation.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Interconversion between Anticipatory and Active GID E3 Ubiquitin Ligase Conformations via Metabolically Driven Substrate Receptor Assembly

    Qiao, S., Langlois, C. R., Chrustowicz, J., Sherpa, D., Karayel, O., Hansen, F. M., Beier, V., von Gronau, S., Bollschweiler, D., Schäfer, T., Alpi, A. F., Mann, Matthias, Prabu, J. R. & Schulman, B. A., 1 Nov 2019, In : Molecular Cell.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. The Atherosclerosis Risk Variant rs2107595 Mediates Allele-Specific Transcriptional Regulation of HDAC9 via E2F3 and Rb1

    Prestel, M., Prell-Schicker, C., Webb, T., Malik, R., Lindner, B., Ziesch, N., Rex-Haffner, M., Röh, S., Viturawong, T., Lehm, M., Mokry, M., den Ruijter, H., Haitjema, S., Asare, Y., Söllner, F., Najafabadi, M. G., Aherrahrou, R., Civelek, M., Samani, N. J., Mann, Matthias, Haffner, C. & Dichgans, M., Oct 2019, In : Stroke. 50, 10, p. 2651-2660 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Key Features Relevant to Select Antigens and TCR From the MHC-Mismatched Repertoire to Treat Cancer

    Audehm, S., Glaser, M., Pecoraro, M., Bräunlein, E., Mall, S., Klar, R., Effenberger, M., Albers, J., Bianchi, H. D. O., Peper, J., Yusufi, N., Busch, D. H., Stevanović, S., Mann, Matthias, Antes, I. & Krackhardt, A. M., 28 Jun 2019, In : Frontiers in Immunology. 10, 1485.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Fibro-adipogenic progenitors of dystrophic mice are insensitive to NOTCH regulation of adipogenesis

    Marinkovic, M., Fuoco, C., Sacco, F., Cerquone Perpetuini, A., Giuliani, G., Micarelli, E., Pavlidou, T., Petrilli, L. L., Reggio, A., Riccio, F., Spada, F., Vumbaca, S., Zuccotti, A., Castagnoli, L., Mann, Matthias, Gargioli, C. & Cesareni, G., Jun 2019, In : Life Science Alliance. 2, 3

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency

    Yang, P., Humphrey, S. J., Cinghu, S., Pathania, R., Oldfield, A. J., Kumar, D., Perera, D., Yang, J. Y. H., James, D. E., Mann, Matthias & Jothi, R., 22 May 2019, In : Cell Systems. 8, 5, p. 427-445.e10

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Cortical circuit alterations precede motor impairments in Huntington's disease mice

    Burgold, J., Schulz-Trieglaff, E. K., Voelkl, K., Gutiérrez-Ángel, S., Bader, J. M., Hosp, F., Mann, Matthias, Arzberger, T., Klein, R., Liebscher, S. & Dudanova, I., 29 Apr 2019, In : Scientific Reports. 9, 1, p. 6634

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Phosphoproteomics Reveals the GSK3-PDX1 Axis as a Key Pathogenic Signaling Node in Diabetic Islets

    Sacco, F., Seelig, A., Humphrey, S. J., Krahmer, N., Volta, F., Reggio, A., Marchetti, P., Gerdes, J. & Mann, Matthias, 7 Mar 2019, In : Cell Metabolism.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape

    Hubel, P., Urban, C., Bergant, V., Schneider, W. M., Knauer, B., Stukalov, A., Scaturro, P., Mann, A., Brunotte, L., Hoffmann, H. H., Schoggins, J. W., Schwemmle, M., Mann, Matthias, Rice, C. M. & Pichlmair, A., 4 Mar 2019, In : Nature Immunology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics

    Angelidis, I., Simon, L. M., Fernandez, I. E., Strunz, M., Mayr, C. H., Greiffo, F. R., Tsitsiridis, G., Ansari, M., Graf, E., Strom, T., Nagendran, M., Desai, T., Eickelberg, O., Mann, Matthias, Theis, F. J. & Schiller, H. B., 27 Feb 2019, In : Nature Communications. 10, 1, p. 963

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    A spatially resolved proteomic atlas of human skin and its associated immune system

    Dyring-Andersen, Beatrice, Coscia, Fabian, Santos, A., Løvendorf, M. B., Sørensen, L. B. P., Niu, Lili, Andersen, J. L., Clark, R., Skov, L., Teunissen, M. B. & Mann, Matthias, 2019, In : Journal of Investigative Dermatology. 139, 9, suppl., p. S259 1 p.

    Research output: Contribution to journalConference abstract in journalResearch

  29. Published

    A spatially resolved proteomic atlas of psoriatic skin

    Dyring-Andersen, Beatrice, Lovendorf, M. B., Santos, A., Coscia, Fabian, Sørensen, L. B. P., Niu, Lili, Andersen, J. L., Teunissen, M. B., Skov, L. & Mann, Matthias, 2019, In : Journal of Investigative Dermatology. 139, 9, suppl., p. S260 1 p.

    Research output: Contribution to journalConference abstract in journalResearch

  30. Published

    Catching Lipid Droplet Contacts by Proteomics

    Krahmer, N. & Mann, Matthias, 2019, In : Contact. 2, p. 1-8 8 p.

    Research output: Contribution to journalReviewResearchpeer-review

  31. Published

    Development, use, application of novel TIMS-Tof system

    Mann, Matthias, 2019, In : Molecular & Cellular Proteomics. 18, 8, p. S20 1 p.

    Research output: Contribution to journalConference abstract in journalResearch

  32. Published

    Efficient mitotic checkpoint signaling depends on integrated activities of Bub1 and the RZZ complex

    Zhang, G., Kruse, Thomas, Guasch Boldú, C., Garvanska, Dimitriya Hristoforova, Coscia, Fabian, Mann, Matthias, Barisic, Marin & Nilsson, Jakob, 2019, In : E M B O Journal. 38, 7, e100977.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Hepatic Rab24 controls blood glucose homeostasis via improving mitochondrial plasticity

    Seitz, S., Kwon, Y., Hartleben, G., Juelg, J., Sekar, R., Krahmer, N., Najafi, B., Loft, A., Gancheva, S., Stemmer, K., Feuchtinger, A., de Angelis, M. H., Mueller, T. D., Mann, Matthias, Blueher, M., Roden, M., Diaz, M. B., Behrends, C., Gilleron, J., Herzig, S. & Zeigerer, A., 2019, In : Nature Metabolism. 1, p. 1009-1026

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    MaxQuant.Live enables global targeting of more than 25,000 peptides

    Wichmann, C., Meier, F., Virreira Winter, S., Brunner, A., Cox, J. & Mann, Matthias, 2019, In : Molecular and Cellular Proteomics. 18, 5, p. 982-994 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Mesothelial Cell HIF1α Expression Is Metabolically Downregulated by Metformin to Prevent Oncogenic Tumor-Stromal Crosstalk

    Hart, P. C., Kenny, H. A., Grassl, N., Watters, K. M., Litchfield, L. M., Coscia, Fabian, Blaženović, I., Ploetzky, L., Fiehn, O., Mann, Matthias, Lengyel, E. & Romero, I. L., 2019, In : Cell Reports. 29, 12, p. 4086-4098.e6

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Metallopeptidase Inhibitor 1 (TIMP-1) promotes receptor tyrosine kinase c-Kit signaling in colorectal cancer

    Nordgaard, Cathrine, Doll, S., Matos, A. L. D. S. A., Høeberg, M., Kazi, J. U., Friis, S., Stenvang, Jan, Rönnstrand, L., Mann, Matthias & Moreira, José, 2019, In : Molecular Oncology. 13, 12, p. 2646-2662

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Mobi-DIK (Ion Mobility DIA Analysis Kit): Targeted analysis software for diaPASEF data improves proteome coverage

    Ha, A., Frank, M., Meier, F., Brunner, A., Kaspar-Schoenefeld, S., Koch, S., Lubeck, M., Raether, O., Collins, B. C., Aebersold, R., Mann, Matthias & Rost, H., 2019, In : Molecular & Cellular Proteomics. 18, 8, p. S17 1 p.

    Research output: Contribution to journalConference abstract in journalResearch

  38. Published

    Myosin binding protein H-like (MYBPHL): a promising biomarker to predict atrial damage

    Lahm, H., Dressen, M., Beck, N., Doppler, S., Deutsch, M., Matsushima, S., Neb, I., Koenig, K. C., Sideris, K., Voss, S., Eschenbach, L., Puluca, N., Deisenhofer, I., Doll, S., Holdenrieder, S., Mann, Matthias, Lange, R. & Krane, M., 2019, In : Scientific Reports. 9, 8 p., 9986.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Neurodevelopmental deficits in human isogenic fragile x syndrome neurons

    Utami, K., Skotte, N. H., Colaco, A. R. -., Yusof, N. A. B. M., Sim, B., Yeo, X. Y., Bae, H., Garcia-Miralles, M., Radulescu, C., Jung, S., Mann, Matthias & Pouladi, M., 2019, In : Journal of Neurochemistry. 150, p. 103 1 p.

    Research output: Contribution to journalConference abstract in journalResearch

  40. Published

    Parallel accumulation - serial fragmentation combined with data-independent acquisition (diaPASEF)

    Meier, F., Brunner, A., Frank, M., Ha, A., Voytik, E., Kaspar-Schoenefeld, S., Lubeck, M., Raether, O., Aebersold, R., Collins, B. C., Roest, H. L. & Mann, Matthias, 2019, In : Molecular & Cellular Proteomics. 18, 8, p. S17 1 p.

    Research output: Contribution to journalConference abstract in journalResearch

  41. Published

    Plasma Proteome Profiling to detect and avoid sample-related biases in biomarker studies

    Geyer, P. E., Voytik, E., Treit, P. V., Doll, S., Kleinhempel, A., Niu, Lili, Müller, J. B., Buchholtz, M., Bader, J. M., Teupser, D., Holdt, L. M. & Mann, Matthias, 2019, In : EMBO Molecular Medicine. 11, 11, e10427.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Plasma proteome profiling discovers novel proteins associated with non-alcoholic fatty liver disease

    Niu, Lili, Geyer, P. E., Albrechtsen, Nicolai Jacob Wewer, Gluud, Lise Lotte, Santos, A., Doll, S., Treit, P. V., Holst, Jens Juul, Knop, Filip Krag, Vilsbøll, Tina, Junker, A., Sachs, S., Stemmer, K., Müller, T. D., Tschöp, M. H., Hofmann, S. M. & Mann, Matthias, 2019, In : Molecular Systems Biology. 15, 16 p., e8793.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Proteomics of Cytochrome c Oxidase-Negative versus -Positive Muscle Fiber Sections in Mitochondrial Myopathy

    Murgia, M., Tan, J., Geyer, P. E., Doll, S., Mann, Matthias & Klopstock, T., 2019, In : Cell Reports. 29, 12, p. 3825-3834 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Proteomics reveals NNMT as a master metabolic regulator of cancer-associated fibroblasts

    Eckert, M. A., Coscia, Fabian, Chryplewicz, A., Chang, J. W., Hernandez, K. M., Pan, S., Tienda, S. M., Nahotko, D. A., Li, G., Blaženović, I., Lastra, R. R., Curtis, M., Yamada, S. D., Perets, R., McGregor, S. M., Andrade, J., Fiehn, O., Moellering, R. E., Mann, Matthias & Lengyel, E., 2019, In : Nature. 569, 7758, p. 723-728

    Research output: Contribution to journalLetterResearchpeer-review

  45. Published

    Proteomics-Based Comparative Mapping of the Secretomes of Human Brown and White Adipocytes Reveals EPDR1 as a Novel Batokine

    Deshmukh, Atul Shahaji, Peijs, Lone, Beaudry, J. L., Jespersen, N. Z., Nielsen, Carsten Haagen, Ma, T., Brunner, A. D., Larsen, T. J., Bayarri-Olmos, R., Prabhakar, B. S., Helgstrand, C., Severinsen, M. C. K., Holst, Birgitte, Kjær, Andreas, Tang-Christensen, M., Sanfridson, A., Garred, Peter, Privé, G. G., Pedersen, Bente Klarlund, Gerhart-Hines, Z., Nielsen, S., Drucker, D. J., Mann, Matthias & Schéele, Camilla Charlotte, 2019, In : Cell Metabolism. 30, 5, p. 963-975.e7 21 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Quick and clean: Cracking sentences encoded in E. coli by LC-MS/MS, de novo sequencing, and dictionary search

    Niu, Lili & Mann, Matthias, 2019, In : EuPA Open Proteomics. 22-23, p. 30-35 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Replication-Coupled DNA-Protein Crosslink Repair by SPRTN and the Proteasome in Xenopus Egg Extracts

    Larsen, Nicolai Balle, Gao, A. O., Sparks, J. L., Gallina, Irene, Wu, R. A., Mann, Matthias, Räschle, M., Walter, J. C. & Duxin, Julien, 2019, In : Molecular Cell. 73, 3, p. 574-588.e7 23 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Response to Raaijmakers & Medema

    Zhang, G., Kruse, Thomas, Boldú, C. G., Garvanska, Dimitriya Hristoforova, Coscia, Fabian, Mann, Matthias, Barisic, Marin & Nilsson, Jakob, 2019, In : The EMBO Journal. 38, 22, 5 p., e103547.

    Research output: Contribution to journalComment/debateResearch

  49. Published

    SILAC-based quantitative mass spectrometry-based proteomics quantifies endoplasmic reticulum stress in whole HeLa cells

    Itzhak, D. N., Sacco, F., Nagaraj, N., Tyanova, S., Mann, Matthias & Murgia, M., 2019, In : Disease Models & Mechanisms. 12, 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Sleep-wake cycles drive daily dynamics of synaptic phosphorylation

    Brüning, F., Noya, S. B., Bange, T., Koutsouli, S., Rudolph, J. D., Tyagarajan, S. K., Cox, J., Mann, Matthias, Brown, S. A. & Robles, M. S., 2019, In : Science (New York, N.Y.). 366, 6462, eaav3617 .

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    The CMG Helicase Bypasses DNA-Protein Cross-Links to Facilitate Their Repair

    Sparks, J. L., Chistol, G., Gao, A. O., Räschle, M., Larsen, Nicolai Balle, Mann, Matthias, Duxin, Julien & Walter, J. C., 2019, In : Cell. 176, 1-2, p. 167-181.e21 36 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    The Case for Proteomics and Phospho-Proteomics in Personalized Cancer Medicine

    Doll, S., Gnad, F. & Mann, Matthias, 2019, In : Proteomics - Clinical Applications. 13, 2, 10 p., e1800113.

    Research output: Contribution to journalReviewResearchpeer-review

  53. Published

    The ever expanding scope of electrospray mass spectrometry-a 30 year journey

    Mann, Matthias, 2019, In : Nature Communications. 10, 3744.

    Research output: Contribution to journalComment/debateResearch

  54. Published

    The forebrain synaptic transcriptome is organized by clocks but its proteome is driven by sleep

    Noya, S. B., Colameo, D., Brüning, F., Spinnler, A., Mircsof, D., Opitz, L., Mann, Matthias, Tyagarajan, S. K., Robles, M. S. & Brown, S. A., 2019, In : Science. 366, 6462, eaav2642 .

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. 2018
  56. PWWP2A binds distinct chromatin moieties and interacts with an MTA1-specific core NuRD complex

    Link, S., Spitzer, R. M. M., Sana, M., Torrado, M., Völker-Albert, M. C., Keilhauer, E. C., Burgold, T., Pünzeler, S., Low, J. K. K., Lindström, I., Nist, A., Regnard, C., Stiewe, T., Hendrich, B., Imhof, A., Mann, Matthias, Mackay, J. P., Bartkuhn, M. & Hake, S. B., 16 Oct 2018, In : Nature Communications. 9, 1, p. 4300

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. UBL3 modification influences protein sorting to small extracellular vesicles

    Ageta, H., Ageta-Ishihara, N., Hitachi, K., Karayel, O., Onouchi, T., Yamaguchi, H., Kahyo, T., Hatanaka, K., Ikegami, K., Yoshioka, Y., Nakamura, K., Kosaka, N., Nakatani, M., Uezumi, A., Ide, T., Tsutsumi, Y., Sugimura, H., Kinoshita, M., Ochiya, T., Mann, Matthias, Setou, M. & Tsuchida, K., 26 Sep 2018, In : Nature Communications. 9, 1, p. 3936

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Phosphoproteomic approach for agonist-specific signaling in mouse brains: mTOR pathway is involved in κ opioid aversion

    Liu, J. J., Chiu, Y., DiMattio, K. M., Chen, C., Huang, P., Gentile, T. A., Muschamp, J. W., Cowan, A., Mann, Matthias & Liu-Chen, L., 20 Jul 2018, In : Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Molecular and structural architecture of polyQ aggregates in yeast

    Gruber, A., Hornburg, D., Antonin, M., Krahmer, N., Collado, J., Schaffer, M., Zubaite, G., Lüchtenborg, C., Sachsenheimer, T., Brügger, B., Mann, Matthias, Baumeister, W., Hartl, F. U., Hipp, M. S. & Fernández-Busnadiego, R., 26 Mar 2018, In : Proceedings of the National Academy of Sciences of the United States of America.

    Research output: Contribution to journalJournal articleResearchpeer-review

  60. Compartment-resolved Proteomic Analysis of Mouse Aorta during Atherosclerotic Plaque Formation Reveals Osteoclast-specific Protein Expression

    Wierer, M., Prestel, M., Schiller, H., Yan, G., Schaab, C., Azghandi, S., Werner, J., Kessler, T., Malik, R., Murgia, M., Aherrahrou, Z., Schunkert, H., Dichgans, M. & Mann, Matthias, Feb 2018, In : Molecular and Cellular Proteomics.

    Research output: Contribution to journalJournal articleResearchpeer-review

  61. Development of phospho-specific Rab protein antibodies to monitor in vivo activity of the LRRK2 Parkinson's disease kinase

    Lis, P., Burel, S., Steger, M., Mann, Matthias, Brown, F., Diez, F., Tonelli, F., Holton, J. L., Ho, P. W., Ho, S., Chou, M., Polinski, N. K., Martinez, T. N., Davies, P. & Alessi, D. R., Jan 2018, In : Biochemical Journal. 475, 1, 22 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  62. Novel and shared neoantigen derived from histone 3 variant H3.3K27M mutation for glioma T cell therapy

    Chheda, Z. S., Kohanbash, G., Okada, K., Jahan, N., Sidney, J., Pecoraro, M., Yang, X., Carrera, D. A., Downey, K. M., Shrivastav, S., Liu, S., Lin, Y., Lagisetti, C., Chuntova, P., Watchmaker, P. B., Mueller, S., Pollack, I. F., Rajalingam, R., Carcaboso, A. M., Mann, Matthias, Sette, A., Garcia, K. C., Hou, Y. & Okada, H., Jan 2018, In : The Journal of Experimental Medicine. 215, 1, p. 141-157 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  63. The non-classical nuclear import carrier Transportin 1 modulates circadian rhythms through its effect on PER1 nuclear localization

    Korge, S., Maier, B., Brüning, F., Ehrhardt, L., Korte, T., Mann, Matthias, Herrmann, A., Robles, M. S. & Kramer, A., Jan 2018, In : P L o S Genetics. 14, 1, p. e1007189

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    A novel LC system embeds analytes in pre-formed gradients for rapid, ultra-robust proteomics

    Bache, N., Geyer, P. E., Bekker-Jensen, D. B., Hørning, O., Falkenby, L., Treit, P. V., Doll, S., Paron, I., Müller, J. B., Meier, F., Olsen, Jesper Velgaard, Vorm, O. & Mann, Matthias, 2018, In : Molecular and Cellular Proteomics. 17, 11, p. 2284-2296 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  65. Published

    BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes

    Meier, F., Geyer, P. E., Virreira Winter, S., Cox, J. & Mann, Matthias, 2018, In : Nature Methods. 15, 6, p. 440-448 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    Constructing a cell-type resolved human liver proteome atlas: THU-034

    Niu, Lili, Geyer, P. & Mann, Matthias, 2018, In : Journal of Hepatology. 68, p. S138-S139

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  67. Published

    EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification

    Virreira Winter, S., Meier, F., Wichmann, C., Cox, J., Mann, Matthias & Meissner, F., 2018, In : Nature Methods. 15, 7, p. 527-530 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  68. Published

    High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform

    Humphrey, S. J., Karayel, O., James, D. E. & Mann, Matthias, 2018, In : Nature Protocols (Print). 13, p. 1897-1916 20 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published

    In vivo brain GPCR signaling elucidated by phosphoproteomics

    Liu, J. J., Sharma, K., Zangrandi, L., Chen, C., Humphrey, S. J., Chiu, Y., Spetea, M., Liu-Chen, L., Schwarzer, C. & Mann, Matthias, 2018, In : Science (New York, N.Y.). 360, 6395, p. 1-11

    Research output: Contribution to journalJournal articleResearchpeer-review

  70. In-depth proteomic analyses of (greenlip abalone) nacre and prismatic organic shell matrix

    Mann, K., Cerveau, N., Gummich, M., Fritz, M., Mann, Matthias & Jackson, D. J., 2018, In : Proteome Science. 16, p. 11

    Research output: Contribution to journalJournal articleResearchpeer-review

  71. Published

    Multi-level Proteomics Identifies CT45 as a Chemosensitivity Mediator and Immunotherapy Target in Ovarian Cancer

    Coscia, Fabian, Lengyel, E., Duraiswamy, J., Ashcroft, B., Bassani-Sternberg, M., Wierer, M., Johnson, A., Wroblewski, K., Montag, A., Yamada, S. D., López-Méndez, B., Nilsson, Jakob, Mund, Andreas, Mann, Matthias & Curtis, M., 2018, In : Cell. 175, 1, p. 159-170.e16

    Research output: Contribution to journalJournal articleResearchpeer-review

  72. Published

    Online parallel accumulation - serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer

    Meier, F., Brunner, A., Koch, S., Koch, H., Lubeck, M., Krause, M., Goedecke, N., Decker, J., Kosinski, T., Park, M. A., Bache, N., Hoerning, O., Cox, J., Räther, O. & Mann, Matthias, 2018, In : Molecular and Cellular Proteomics. 17, 12, p. 2534-2545

    Research output: Contribution to journalJournal articleResearchpeer-review

  73. Published

    Opinion: Advocating for science progress as a human right

    Mann, Sebastian Porsdam, Donders, Y., Mitchell, C., Bradley, V. J., Chou, M. F., Mann, Matthias, Church, G. & Porsdam, Helle, 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 43, p. 10820-10823 4 p.

    Research output: Contribution to journalComment/debateCommunication

  74. Published

    Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis

    Krahmer, N., Najafi, B., Schueder, F., Quagliarini, F., Steger, M., Seitz, S., Kasper, R., Salinas, F., Cox, J., Uhlenhaut, N. H., Walther, T. C., Jungmann, R., Zeigerer, A., Borner, G. H. H. & Mann, Matthias, 2018, In : Developmental Cell. 47, 2, p. 205-221.E7

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery

    Albrechtsen, Nicolai Jacob Wewer, Geyer, P. E., Doll, S., Treit, P. V., Bojsen-Møller, K. N., Martinussen, C., Jørgensen, N. B., Torekov, Signe Sørensen, Meier, F., Niu, Lili, Santos, A., Keilhauer, E. C., Holst, Jens Juul, Madsbad, Sten & Mann, Matthias, 2018, In : Cell Systems. 7, 6, p. 601-612

    Research output: Contribution to journalJournal articleResearchpeer-review

  76. Published

    Proteomics for blood biomarker exploration of severe mental illness: pitfalls of the past and potential for the future

    Comes, A. L., Papiol, S., Mueller, T., Geyer, P. E., Mann, Matthias & Schulze, T. G., 2018, In : Translational Psychiatry. 8, p. 1-15 15 p., 160.

    Research output: Contribution to journalReviewResearchpeer-review

  77. Published

    Proteomics in the Study of Liver Diseases

    Niu, Lili, Geyer, P. E. & Mann, Matthias, 2018, The Human Gut-Liver-Axis in Health and Disease. Krag, A. & Hansen, T. (eds.). Springer, p. 165-193

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  78. Published

    Quality control for plasma and cerebrospinal fluid samples using mass spectrometry

    Skotte, N. H., Geyer, P. E., Steger, M., Treit, P. V., Voytik, E., Hellem, M. N., Nielsen, Jørgen Erik & Mann, Matthias, 2018, In : Journal of Neurology, Neurosurgery and Psychiatry. 89, p. A31-A32

    Research output: Contribution to journalConference abstract in journalResearch

  79. Published

    Rapid proteomic analysis for solid tumors reveals LSD1 as a drug target in an end-stage cancer patient

    Doll, S., Kriegmair, M. C., Santos, A., Wierer, M., Coscia, Fabian, Neil, Helen, Porubsky, S., Geyer, P. E., Mund, Andreas, Nuhn, P. & Mann, Matthias, 2018, In : Molecular Oncology. 12, 8, p. 1296-1307 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. The Transcription Factor ETV1 Induces Atrial Remodeling and Arrhythmia

    Rommel, C., Rösner, S., Lother, A., Barg, M., Schwaderer, M., Gilsbach, R., Bömicke, T., Schnick, T., Mayer, S., Doll, S., Hesse, M., Kretz, O., Stiller, B., Neumann, F., Mann, Matthias, Krane, M., Fleischmann, B. K., Ravens, U. & Hein, L., 2018, In : Circulation Research. 123, 5, p. 550-563 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. The hemicellulose-degrading enzyme system of the thermophilic bacterium Clostridium stercorarium: comparative characterisation and addition of new hemicellulolytic glycoside hydrolases

    Broeker, J., Mechelke, M., Baudrexl, M., Mennerich, D., Hornburg, D., Mann, Matthias, Schwarz, W. H., Liebl, W. & Zverlov, V. V., 2018, In : Biotechnology for Biofuels. 11, p. 229

    Research output: Contribution to journalJournal articleResearchpeer-review

  82. Published

    The proteome of prostate cancer bone metastasis reveals heterogeneity with prognostic implications

    Iglesias Gato, Diego, Thysell, E., Tyanova, S., Crnalic, S., Santos, A., Lima, T. S., Geiger, T., Cox, J., Widmark, A., Bergh, A., Mann, Matthias, Flores-Morales, A. & Wikström, P., 2018, In : Clinical Cancer Research. 24, 21, p. 5433-5444 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  83. 2017
  84. Spatiotemporal Proteomic Profiling of Huntington's Disease Inclusions Reveals Widespread Loss of Protein Function

    Hosp, F., Gutiérrez-Ángel, S., Schaefer, M. H., Cox, J., Meissner, F., Hipp, M. S., Hartl, F., Klein, R., Dudanova, I. & Mann, Matthias, 21 Nov 2017, In : Cell Reports. 21, 8, p. 2291-2303 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  85. Published

    Region and cell-type resolved quantitative proteomic map of the human heart

    Doll, S., Dreßen, M., Geyer, P. E., Itzhak, D. N., Braun, C., Doppler, S. A., Meier, F., Deutsch, M., Lahm, H., Lange, R., Krane, M. & Mann, Matthias, 13 Nov 2017, In : Nature Communications. 8, 1, 13 p., 1469.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Systematic proteomic analysis of LRRK2-mediated Rab GTPase phosphorylation establishes a connection to ciliogenesis

    Steger, M., Diez, F., Dhekne, H. S., Lis, P., Nirujogi, R. S., Karayel, O., Tonelli, F., Martinez, T. N., Lorentzen, E., Pfeffer, S. R., Alessi, D. R. & Mann, Matthias, 10 Nov 2017, In : eLife. 6

    Research output: Contribution to journalJournal articleResearchpeer-review

  87. Published

    A Primer on Concepts and Applications of Proteomics in Neuroscience

    Hosp, F. & Mann, Matthias, 1 Nov 2017, In : Neuron. 96, 3, p. 558-571 14 p.

    Research output: Contribution to journalReviewResearchpeer-review

  88. Published

    Circulating Glucagon 1-61 Regulates Blood Glucose by Increasing Insulin Secretion and Hepatic Glucose Production

    Albrechtsen, Nicolai Jacob Wewer, Kuhre, Rune Ehrenreich, Hornburg, D., Jensen, C. Z., Hornum, Mads, Dirksen, C., Svane, M., Gasbjerg, Lærke Smidt, Jorgensen, N. B., Gabe, Maria Buur Nordskov, Balk-Moller, E., Albrechtsen, Reidar, Winther-Sørensen, Marie, Galsgaard, Katrine Douglas, Meissner, F., Jorsal, T., Lund, A., Vilsbøll, Tina, Eliasen, R., Bojsen-Moller, K. N., Idorn, T., Deacon, Carolyn F., Knop, Filip Krag, Rosenkilde, Mette, Hartmann, Bolette, Feldt-Rasmussen, Bo, Mann, Matthias, Madsbad, Sten & Holst, Jens Juul, Nov 2017, In : Cell Reports. 21, 6, p. 1452-1460

    Research output: Contribution to journalJournal articleResearchpeer-review

  89. Published

    Why is it so difficult to measure glucagon-like peptide-1 in a mouse?

    Windeløv, Johanne Agerlin, Albrechtsen, Nicolai Jacob Wewer, Kuhre, Rune Ehrenreich, Jepsen, Sara Lind, Hornburg, D., Pedersen, J., Jensen, E. P., Galsgaard, Katrine Douglas, Winther-Sørensen, Marie, Ørgaard, A., Deacon, Carolyn F., Mann, Matthias, Kissow, Hannelouise, Hartmann, Bolette & Holst, Jens Juul, Oct 2017, In : Diabetologia. 60, 10, p. 2066-2075 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  90. Published

    Revisiting biomarker discovery by plasma proteomics

    Geyer, P. E., Holdt, L. M., Teupser, D. & Mann, Matthias, 26 Sep 2017, In : Molecular Systems Biology. 13, 9, 16 p., 942.

    Research output: Contribution to journalReviewResearchpeer-review

  91. A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance

    Tain, L. S., Sehlke, R., Jain, C., Chokkalingam, M., Nagaraj, N., Essers, P., Rassner, M., Grönke, S., Froelich, J., Dieterich, C., Mann, Matthias, Alic, N., Beyer, A. & Partridge, L., 15 Sep 2017, In : Molecular Systems Biology. 13, 9, p. 939

    Research output: Contribution to journalJournal articleResearchpeer-review

  92. A Stat6/Pten Axis Links Regulatory T Cells with Adipose Tissue Function

    Kälin, S., Becker, M., Ott, V. B., Serr, I., Hosp, F., Mollah, M. M. H., Keipert, S., Lamp, D., Rohner-Jeanrenaud, F., Flynn, V. K., Scherm, M. G., Nascimento, L. F. R., Gerlach, K., Popp, V., Dietzen, S., Bopp, T., Krishnamurthy, P., Kaplan, M. H., Serrano, M., Woods, S. C., Tripal, P., Palmisano, R., Jastroch, M., Blüher, M., Wolfrum, C., Weigmann, B., Ziegler, A., Mann, Matthias, Tschöp, M. H. & Daniel, C., 5 Sep 2017, In : Cell Metabolism. 26, 3, p. 475-492.e7

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Multivalent binding of PWWP2A to H2A.Z regulates mitosis and neural crest differentiation

    Pünzeler, S., Link, S., Wagner, G., Keilhauer, E. C., Kronbeck, N., Spitzer, R. M., Leidescher, S., Markaki, Y., Mentele, E., Regnard, C., Schneider, K., Takahashi, D., Kusakabe, M., Vardabasso, C., Zink, L. M., Straub, T., Bernstein, E., Harata, M., Leonhardt, H., Mann, Matthias, Rupp, R. A. & Hake, S. B., 1 Aug 2017, In : E M B O Journal. 36, 15, p. 2263-2279 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle Aging

    Murgia, M., Toniolo, L., Nagaraj, N., Ciciliot, S., Vindigni, V., Schiaffino, S., Reggiani, C. & Mann, Matthias, 13 Jun 2017, In : Cell Reports. 19, 11, p. 2396-2409 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  95. H3.Y discriminates between HIRA and DAXX chaperone complexes and reveals unexpected insights into human DAXX-H3.3-H4 binding and deposition requirements

    Zink, L., Delbarre, E., Eberl, H. C., Keilhauer, E. C., Bönisch, C., Pünzeler, S., Bartkuhn, M., Collas, P., Mann, Matthias & Hake, S. B., 2 Jun 2017, In : Nucleic Acids Research. 45, 10, p. 5691-5706 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  96. Social network architecture of human immune cells unveiled by quantitative proteomics

    Rieckmann, J. C., Geiger, R., Hornburg, D., Wolf, T., Kveler, K., Jarrossay, D., Sallusto, F., Shen-Orr, S. S., Lanzavecchia, A., Mann, Matthias & Meissner, F., May 2017, In : Nature Immunology. 18, 5, p. 583-593 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  97. Published

    Loss-less Nano-fractionator for High Sensitivity, High Coverage Proteomics

    Kulak, N. A., Geyer, P. E. & Mann, Matthias, Apr 2017, In : Molecular and Cellular Proteomics. 16, 4, p. 694-705 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  98. Lysine acetylation in mitochondria: From inventory to function

    Hosp, F., Lassowskat, I., Santoro, V., De Vleesschauwer, D., Fliegner, D., Redestig, H., Mann, Matthias, Christian, S., Hannah, M. A. & Finkemeier, I., Mar 2017, In : Mitochondrion. 33, p. 58-71 14 p.

    Research output: Contribution to journalReviewResearchpeer-review

  99. Widespread Proteome Remodeling and Aggregation in Aging C. elegans

    Walther, D. M., Kasturi, P., Zheng, M., Pinkert, S., Vecchi, G., Ciryam, P., Morimoto, R. I., Dobson, C. M., Vendruscolo, M., Mann, Matthias & Hartl, F. U., 23 Feb 2017, In : Cell. 168, 5, p. 944

    Research output: Contribution to journalJournal articleResearchpeer-review

  100. Phylointeractomics reconstructs functional evolution of protein binding

    Kappei, D., Scheibe, M., Paszkowski-Rogacz, M., Bluhm, A., Gossmann, T. I., Dietz, S., Dejung, M., Herlyn, H., Buchholz, F., Mann, Matthias & Butter, F., 8 Feb 2017, In : Nature Communications. 8, p. 14334

    Research output: Contribution to journalJournal articleResearchpeer-review

  101. CRL2(Lrr1) promotes unloading of the vertebrate replisome from chromatin during replication termination

    Dewar, J. M., Low, E., Mann, Matthias, Räschle, M. & Walter, J. C., 1 Feb 2017, In : Genes & Development. 31, 3, p. 275-290 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  102. Phosphorylation Is a Central Mechanism for Circadian Control of Metabolism and Physiology

    Robles, M. S., Humphrey, S. J. & Mann, Matthias, 10 Jan 2017, In : Cell Metabolism. 25, 1, p. 118-127 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  103. Deep Proteome Profiling Reveals Common Prevalence of MZB1-positive Plasma B Cells in Human Lung and Skin Fibrosis

    Schiller, H. B., Mayr, C. H., Leuschner, G., Strunz, M., Staab-Weijnitz, C., Preisendörfer, S., Eckes, B., Moinzadeh, P., Krieg, T., Schwartz, D. A., Hatz, R. A., Behr, J., Mann, Matthias & Eickelberg, O., 2017, In : American Journal of Respiratory and Critical Care Medicine. 196, 10, p. 1298–1310

    Research output: Contribution to journalJournal articleResearchpeer-review

  104. Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis

    Hartl, M., Füßl, M., Boersema, P. J., Jost, J., Kramer, K., Bakirbas, A., Sindlinger, J., Plöchinger, M., Leister, D., Uhrig, G., Moorhead, G. B., Cox, J., Salvucci, M. E., Schwarzer, D., Mann, Matthias & Finkemeier, I., 2017, In : Molecular Systems Biology. 13, 10, 16 p., 949.

    Research output: Contribution to journalJournal articleResearchpeer-review

  105. Published

    Plenary Lecture Proteomics technologies for signaling, clinical applications

    Mann, Matthias, 2017, p. S62-S62.

    Research output: Contribution to conferenceConference abstract for conferenceCommunication

  106. 2016
  107. Published

    Proteomics reveals the effects of sustained weight loss on the human plasma proteome

    Geyer, P. E., Albrechtsen, Nicolai Jacob Wewer, Tyanova, S., Grassl, N., Lehmann, Eva Winning, Lundgren, J., Madsbad, Sten, Holst, Jens Juul, Torekov, Signe Sørensen & Mann, Matthias, 22 Dec 2016, In : Molecular Systems Biology. 12, 16 p., 901.

    Research output: Contribution to journalJournal articleResearchpeer-review

  108. C9ORF72 interaction with cofilin modulates actin dynamics in motor neurons

    Sivadasan, R., Hornburg, D., Drepper, C., Frank, N., Jablonka, S., Hansel, A., Lojewski, X., Sterneckert, J., Hermann, A., Shaw, P. J., Ince, P. G., Mann, Matthias, Meissner, F. & Sendtner, M., Dec 2016, In : Nature Neuroscience. 19, 12, p. 1610-1618 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  109. Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry

    Bassani-Sternberg, M., Bräunlein, E., Klar, R., Engleitner, T., Sinitcyn, P., Audehm, S., Straub, M., Weber, J., Slotta-Huspenina, J., Specht, K., Martignoni, M. E., Werner, A., Hein, R., H Busch, D., Peschel, C., Rad, R., Cox, J., Mann, Matthias & Krackhardt, A. M., 21 Nov 2016, In : Nature Communications. 7, p. 13404

    Research output: Contribution to journalJournal articleResearchpeer-review

  110. Glucose-regulated and drug-perturbed phosphoproteome reveals molecular mechanisms controlling insulin secretion

    Sacco, F., Humphrey, S. J., Cox, J., Mischnik, M., Schulte, A., Klabunde, T., Schäfer, M. & Mann, Matthias, 14 Nov 2016, In : Nature Communications. 7, p. 13250

    Research output: Contribution to journalJournal articleResearchpeer-review

  111. Published

    SCAI promotes DNA double-strand break repair in distinct chromosomal contexts

    Hansen, R. K., Mund, Andreas, Poulsen, S. L., Sandoval, M., Klement, K., Tsouroula, K., Tollenaere, M. A. X., Räschle, M., Soria, R., Offermanns, S., Worzfeld, T., Grosse, R., Brandt, D. T., Rozell, B., Mann, Matthias, Cole, F., Soutoglou, E., Goodarzi, A. A., Daniel, J. A., Mailand, Niels & Bekker-Jensen, Simon Holst, 7 Nov 2016, In : Nature Cell Biology. 18, 12, p. 1357–1366

    Research output: Contribution to journalLetterResearchpeer-review

  112. Published

    Activation of the ATR kinase by the RPA-binding protein ETAA1

    Haahr, Peter Thorlund, Hoffmann, Saskia, Tollenaere, M. A. X., Ho, T., Toledo Lazaro, Luis Ignacio, Mann, Matthias, Bekker-Jensen, Simon Holst, Räschle, M. & Mailand, Niels, Nov 2016, In : Nature Cell Biology. 18, 11, p. 1196–1207

    Research output: Contribution to journalJournal articleResearchpeer-review

  113. Origins of mass spectrometry-based proteomics

    Mann, Matthias, Nov 2016, In : Nature Reviews. Molecular Cell Biology. 17, 11, p. 678

    Research output: Contribution to journalJournal articleResearchpeer-review

  114. L-Arginine Modulates T Cell Metabolism and Enhances Survival and Anti-tumor Activity

    Geiger, R., Rieckmann, J. C., Wolf, T., Basso, C., Feng, Y., Fuhrer, T., Kogadeeva, M., Picotti, P., Meissner, F., Mann, Matthias, Zamboni, N., Sallusto, F. & Lanzavecchia, A., 20 Oct 2016, In : Cell. 167, 3, p. 829-842.e13

    Research output: Contribution to journalJournal articleResearchpeer-review

  115. Proteomics to study DNA-bound and chromatin-associated gene regulatory complexes

    Wierer, M. & Mann, Matthias, 1 Oct 2016, In : Human Molecular Genetics. 25, R2, p. R106-R114

    Research output: Contribution to journalJournal articleResearchpeer-review

  116. Published

    Mass-spectrometric exploration of proteome structure and function

    Aebersold, R. & Mann, Matthias, 15 Sep 2016, In : Nature. 537, 7620, p. 347-55 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  117. Soluble Oligomers of PolyQ-Expanded Huntingtin Target a Multiplicity of Key Cellular Factors

    Kim, Y. E., Hosp, F., Frottin, F., Ge, H., Mann, Matthias, Hayer-Hartl, M. & Hartl, F. U., 15 Sep 2016, In : Molecular Cell. 63, 6, p. 951-64 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  118. The Perseus computational platform for comprehensive analysis of (prote)omics data

    Tyanova, S., Temu, T., Sinitcyn, P., Carlson, A., Hein, M. Y., Geiger, T., Mann, Matthias & Cox, J., Sep 2016, In : Nature Methods. 13, 9, p. 731-40 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  119. p53 down-regulates SARS coronavirus replication and is targeted by the SARS-unique domain and PLpro via E3 ubiquitin ligase RCHY1

    Ma-Lauer, Y., Carbajo-Lozoya, J., Hein, M. Y., Müller, M. A., Deng, W., Lei, J., Meyer, B., Kusov, Y., von Brunn, B., Bairad, D. R., Hünten, S., Drosten, C., Hermeking, H., Leonhardt, H., Mann, Matthias, Hilgenfeld, R. & von Brunn, A., 30 Aug 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 35, p. E5192-201

    Research output: Contribution to journalJournal articleResearchpeer-review

  120. Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans

    Holdt, L. M., Stahringer, A., Sass, K., Pichler, G., Kulak, N. A., Wilfert, W., Kohlmaier, A., Herbst, A., Northoff, B. H., Nicolaou, A., Gäbel, G., Beutner, F., Scholz, M., Thiery, J., Musunuru, K., Krohn, K., Mann, Matthias & Teupser, D., 19 Aug 2016, In : Nature Communications. 7, p. 12429

    Research output: Contribution to journalJournal articleResearchpeer-review

  121. HCD Fragmentation of Glycated Peptides

    Keilhauer, E. C., Geyer, P. E. & Mann, Matthias, 5 Aug 2016, In : Journal of Proteome Research. 15, 8, p. 2881-90 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  122. Glutathione peroxidase 3 localizes to the epithelial lining fluid and the extracellular matrix in interstitial lung disease

    Schamberger, A. C., Schiller, H. B., Fernandez, I. E., Sterclova, M., Heinzelmann, K., Hennen, E., Hatz, R., Behr, J., Vašáková, M., Mann, Matthias, Eickelberg, O. & Staab-Weijnitz, C. A., 20 Jul 2016, In : Scientific Reports. 6, p. 29952

    Research output: Contribution to journalJournal articleResearchpeer-review

  123. A Proteomics Approach to the Protein Normalization Problem: Selection of Unvarying Proteins for MS-Based Proteomics and Western Blotting

    Wiśniewski, J. R. & Mann, Matthias, 1 Jul 2016, In : Journal of Proteome Research. 15, 7, p. 2321-6 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  124. PLEKHA7 Recruits PDZD11 to Adherens Junctions to Stabilize Nectins

    Guerrera, D., Shah, J., Vasileva, E., Sluysmans, S., Méan, I., Jond, L., Poser, I., Mann, Matthias, Hyman, A. A. & Citi, S., 20 May 2016, In : The Journal of Biological Chemistry. 291, 21, p. 11016-29 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  125. MicroRNAs of the miR-290-295 Family Maintain Bivalency in Mouse Embryonic Stem Cells

    Graham, B., Marcais, A., Dharmalingam, G., Carroll, T., Kanellopoulou, C., Graumann, J., Nesterova, T. B., Bermange, A., Brazauskas, P., Xella, B., Kriaucionis, S., Higgs, D. R., Brockdorff, N., Mann, Matthias, Fisher, A. G. & Merkenschlager, M., 10 May 2016, In : Stem Cell Reports. 6, 5, p. 635-642 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  126. Homology-driven assembly of NOn-redundant protEin sequence sets (NOmESS) for mass spectrometry

    Temu, T., Mann, Matthias, Räschle, M. & Cox, J., 1 May 2016, In : Bioinformatics (Online). 32, 9, p. 1417-9 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  127. Molecular basis of PRC1 targeting to Polycomb response elements by PhoRC

    Frey, F., Sheahan, T., Finkl, K., Stoehr, G., Mann, Matthias, Benda, C. & Müller, J., 1 May 2016, In : Genes & Development. 30, 9, p. 1116-27 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  128. Inflammatory signaling in human tuberculosis granulomas is spatially organized

    Marakalala, M. J., Raju, R. M., Sharma, K., Zhang, Y. J., Eugenin, E. A., Prideaux, B., Daudelin, I. B., Chen, P., Booty, M. G., Kim, J. H., Eum, S. Y., Via, L. E., Behar, S. M., Barry, C. E., Mann, Matthias, Dartois, V. & Rubin, E. J., May 2016, In : Nature Medicine. 22, 5, p. 531-8 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  129. Published

    Oxyntomodulin Identified as a Marker of Type 2 Diabetes and Gastric Bypass Surgery by Mass-spectrometry Based Profiling of Human Plasma

    Albrechtsen, Nicolai Jacob Wewer, Hornburg, D., Albrechtsen, Reidar, Svendsen, B., Toräng, S., Jepsen, Sara Lind, Kuhre, Rune Ehrenreich, Hansen, M., Janus, Charlotte, Floyd, A., Lund, A., Vilsbøll, Tina, Knop, Filip Krag, drb459, drb459, Deacon, Carolyn F., Meissner, F., Mann, Matthias, Holst, Jens Juul & Hartmann, Bolette, May 2016, In : EBioMedicine. 7, p. 112-120 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  130. Published

    The Proteome of Primary Prostate Cancer

    Iglesias Gato, Diego, Wikström, P., Tyanova, S., Lavallee, C., Thysell, E., Carlsson, J., Hägglöf, C., Cox, J., Andrén, O., Stattin, P., Egevad, L., Widmark, A., Bjartell, A., Collins, C. C., Bergh, A., Geiger, T., Mann, Matthias & Flores-Morales, A., May 2016, In : European Urology. 69, 5, p. 942-952 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  131. Published

    Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome

    Grassl, N., Kulak, N. A., Pichler, G., Geyer, P. E., Jung, J., Schubert, S., Sinitcyn, P., Cox, J. & Mann, Matthias, 21 Apr 2016, In : Genome Medicine. 8, 13 p., 44.

    Research output: Contribution to journalJournal articleResearchpeer-review

  132. Published

    C/EBPα creates elite cells for iPSC reprogramming by upregulating Klf4 and increasing the levels of Lsd1 and Brd4

    Di Stefano, B., Collombet, S., Jakobsen, J. S., Wierer, M., Sardina, J. L., Lackner, A., Stadhouders, R., Segura-Morales, C., Francesconi, M., Limone, F., Mann, Matthias, Porse, Bo Torben, Thieffry, D. & Graf, T., Apr 2016, In : Nature Cell Biology. 18, 4, p. 371-81 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  133. Deep Proteomics of Breast Cancer Cells Reveals that Metformin Rewires Signaling Networks Away from a Pro-growth State

    Sacco, F., Silvestri, A., Posca, D., Pirrò, S., Gherardini, P. F., Castagnoli, L., Mann, Matthias & Cesareni, G., 23 Mar 2016, In : Cell Systems. 2, 3, p. 159-71 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  134. Published

    Plasma Proteome Profiling to Assess Human Health and Disease

    Geyer, P. E., Kulak, N. A., Pichler, G., Holdt, L. M., Teupser, D. & Mann, Matthias, 23 Mar 2016, In : Cell Systems. 2, 3, p. 185-95 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  135. Circadian control of oscillations in mitochondrial rate-limiting enzymes and nutrient utilization by PERIOD proteins

    Neufeld-Cohen, A., Robles, M. S., Aviram, R., Manella, G., Adamovich, Y., Ladeuix, B., Nir, D., Rousso-Noori, L., Kuperman, Y., Golik, M., Mann, Matthias & Asher, G., 22 Mar 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 12, p. E1673-82

    Research output: Contribution to journalJournal articleResearchpeer-review

  136. Published

    Evidence of Extrapancreatic Glucagon Secretion in Man

    Lund, A., Bagger, J. I., Albrechtsen, Nicolai Jacob Wewer, Christensen, M., Grøndahl, M., Hartmann, Bolette, Mathiesen, Elisabeth, Hansen, C. P., Storkholm, J. H., van Hall, Gerrit, Rehfeld, Jens Frederik, Hornburg, D., Meissner, F., Mann, Matthias, Larsen, S., Holst, Jens Juul, Vilsbøll, Tina & Knop, Filip Krag, Mar 2016, In : Diabetes. 65, 3, p. 585-597 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  137. A genome-wide resource for the analysis of protein localisation in Drosophila

    Sarov, M., Barz, C., Jambor, H., Hein, M. Y., Schmied, C., Suchold, D., Stender, B., Janosch, S., K J, V. V., Krishnan, R. T., Krishnamoorthy, A., Ferreira, I. R. S., Ejsmont, R. K., Finkl, K., Hasse, S., Kämpfer, P., Plewka, N., Vinis, E., Schloissnig, S., Knust, E., Hartenstein, V., Mann, Matthias, Ramaswami, M., VijayRaghavan, K., Tomancak, P. & Schnorrer, F., 20 Feb 2016, In : eLife. 5, p. e12068

    Research output: Contribution to journalJournal articleResearchpeer-review

  138. IKAP: A heuristic framework for inference of kinase activities from Phosphoproteomics data

    Mischnik, M., Sacco, F., Cox, J., Schneider, H., Schäfer, M., Hendlich, M., Crowther, D., Mann, Matthias & Klabunde, T., 1 Feb 2016, In : Bioinformatics (Online). 32, 3, p. 424-31 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  139. Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPases

    Steger, M., Tonelli, F., Ito, G., Davies, P., Trost, M., Vetter, M., Wachter, S., Lorentzen, E., Duddy, G., Wilson, S., Baptista, M. A., Fiske, B. K., Fell, M. J., Morrow, J. A., Reith, A. D., Alessi, D. R. & Mann, Matthias, 29 Jan 2016, In : eLife. 5

    Research output: Contribution to journalJournal articleResearchpeer-review

  140. Cytoplasmic protein aggregates interfere with nucleocytoplasmic transport of protein and RNA

    Woerner, A. C., Frottin, F., Hornburg, D., Feng, L. R., Meissner, F., Patra, M., Tatzelt, J., Mann, Matthias, Winklhofer, K. F., Hartl, F. U. & Hipp, M. S., 8 Jan 2016, In : Science (New York, N.Y.). 351, 6269, p. 173-6 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  141. Published

    Proteomic maps of breast cancer subtypes

    Tyanova, S., Albrechtsen, Reidar, Kronqvist, P., Cox, J., Mann, Matthias & Geiger, T., 4 Jan 2016, In : Nature Communications. 7, 11 p., 10259.

    Research output: Contribution to journalJournal articleResearchpeer-review

  142. Published

    TRAIP is a PCNA-binding ubiquitin ligase that protects genome stability after replication stress

    Hoffmann, Saskia, Smedegaard, S., Nakamura, Kyosuke, Mortuza, G. B., Räschle, M., Ibañez de Opakua, A., Oka, Y., Feng, Y., Blanco, F. J., Mann, Matthias, Montoya, Guillermo, Groth, Anja, Bekker-Jensen, Simon Holst & Mailand, Niels, 4 Jan 2016, In : The Journal of Cell Biology. 212, 1, p. 63-75

    Research output: Contribution to journalJournal articleResearchpeer-review

  143. 2015
  144. Published

    Mitochondrial specialization revealed by single muscle fiber proteomics: focus on the Krebs cycle

    Schiaffino, S., Reggiani, C., Kostrominova, T. Y., Mann, Matthias & Murgia, M., Dec 2015, In : Scandinavian Journal of Medicine & Science in Sports. 25, Suppl 4, p. 41-8 8 p.

    Research output: Contribution to journalReviewResearchpeer-review

  145. Published

    Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow

    Deshmukh, Atul Shahaji, Cox, J., Jensen, Lars Juhl, Meissner, F. & Mann, Matthias, 6 Nov 2015, In : Journal of Proteome Research. 14, 11, p. 4885-95 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  146. Published

    Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells

    Ding, L., Paszkowski-Rogacz, M., Winzi, M., Chakraborty, D., Theis, M., Singh, S., Ciotta, G., Poser, I., Roguev, A., Chu, W. K., Choudhary, Chuna Ram, Mann, Matthias, Stewart, A. F., Krogan, N. & Buchholz, F., 26 Aug 2015, In : Cell Systems. 1, 2, p. 141-151 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  147. A double-barrel LC-MS/MS system to quantify 96 interactomes per day

    Hosp, F., Scheltema, R. A., Eberl, C., Kulak, N. A., Keilhauer, E. C., Mayr, K. & Mann, Matthias, 17 Apr 2015, In : Molecular and Cellular Proteomics. 14, 7, p. 2030-41 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  148. Published

    Deep proteomics of mouse skeletal muscle enables quantitation of protein isoforms, metabolic pathways and transcription factors

    Deshmukh, Atul Shahaji, Murgia, M., Nagaraja, N., Treebak, Jonas Thue, Cox, J. & Mann, Matthias, Apr 2015, In : Molecular and Cellular Proteomics. 14, 4, p. 841-853

    Research output: Contribution to journalJournal articleResearchpeer-review

  149. Antisense-mediated exon skipping: a therapeutic strategy for titin-based dilated cardiomyopathy

    Gramlich, M., Pane, L. S., Zhou, Q., Chen, Z., Murgia, M., Schötterl, S., Goedel, A., Metzger, K., Brade, T., Parrotta, E., Schaller, M., Gerull, B., Thierfelder, L., Aartsma-Rus, A., Labeit, S., Atherton, J. J., McGaughran, J., Harvey, R. P., Sinnecker, D., Mann, Matthias, Laugwitz, K., Gawaz, M. P. & Moretti, A., 9 Mar 2015, In : EMBO Molecular Medicine. 7, 5, p. 562-576 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  150. Published

    Single muscle fiber proteomics reveals unexpected mitochondrial specialization

    Murgia, M., Nagaraj, N., Deshmukh, Atul Shahaji, Zeiler, M., Cancellara, P., Moretti, I., Reggiani, C., Schiaffino, S. & Mann, Matthias, 1 Mar 2015, In : E M B O Reports. 16, 3, p. 387-95 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  151. Published

    Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

    Bassani-Sternberg, M., Pletscher-Frankild, S., Jensen, Lars Juhl & Mann, Matthias, Mar 2015, In : Molecular and Cellular Proteomics. 14, 3, p. 658-73 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  152. Published

    Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links

    Räschle, M., Smeenk, G., Hansen, R. K., Temu, T., Oka, Y., Hein, M. Y., Nagaraj, N., Long, D. T., Walter, J. C., Hofmann, K., Storchova, Z., Cox, J., Bekker-Jensen, Simon Holst, Mailand, Niels & Mann, Matthias, 2015, In : Science. 348, 6234, p. 539- 10 p., 1253671.

    Research output: Contribution to journalJournal articleResearchpeer-review

  153. 2014
  154. Overexpression of Q-rich prion-like proteins suppresses polyQ cytotoxicity and alters the polyQ interactome

    Ripaud, L., Chumakova, V., Antonin, M., Hastie, A. R., Pinkert, S., Körner, R., Ruff, K. M., Pappu, R. V., Hornburg, D., Mann, Matthias, Hartl, F. U. & Hipp, M. S., 23 Dec 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 51, p. 18219-24 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  155. Published

    The growing landscape of lysine acetylation links metabolism and cell signalling

    Choudhary, Chuna Ram, Weinert, B. T., Nishida, Y., Verdin, E. & Mann, Matthias, 23 Jul 2014, In : Nature Reviews. Molecular Cell Biology. 15, 8, p. 536-50 15 p.

    Research output: Contribution to journalReviewResearchpeer-review

  156. Published

    Time-resolved dissection of early phosphoproteome and ensuing proteome changes in response to TGF-β

    J D'Souza, R. C., Knittle, A. M., Nagaraj, N., van Dinther, M., Choudhary, Chuna Ram, Ten Dijke, P., Mann, Matthias & Sharma, K., Jul 2014, In : Science signaling. 7, 335, p. rs5 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  157. Published

    Specificity and commonality of the phosphoinositide-binding proteome analyzed by quantitative mass spectrometry

    Jungmichel, S., Sylvestersen, K. B., Choudhary, Chuna Ram, Nguyen, S., Mann, Matthias & Nielsen, Michael Lund, 13 Feb 2014, In : Cell Reports. 6, 3, p. 578-91 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  158. 2013
  159. N-linked glycosylation enrichment for in-depth cell surface proteomics of diffuse large B-cell lymphoma subtypes

    Deeb, S. J., Cox, J., Schmidt-Supprian, M. & Mann, Matthias, 4 Nov 2013, In : Molecular & Cellular Proteomics.

    Research output: Contribution to journalJournal articleResearchpeer-review

  160. Published

    Status of large-scale analysis of post-translational modifications by mass spectrometry

    Olsen, Jesper Velgaard & Mann, Matthias, 1 Nov 2013, In : Molecular & Cellular Proteomics. 12, p. 3444-52

    Research output: Contribution to journalJournal articleResearchpeer-review

  161. A DNA-Centric Protein Interaction Map of Ultraconserved Elements Reveals Contribution of Transcription Factor Binding Hubs to Conservation

    Viturawong, T., Meissner, F., Butter, F. & Mann, Matthias, 31 Oct 2013, In : Plant Cell Reports. 5, 2, p. 531-45 15 p.

    Research output: Contribution to journalJournal articleResearch

  162. Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators

    Scheibe, M., Arnoult, N., Kappei, D., Buchholz, F., Decottignies, A., Butter, F. & Mann, Matthias, 22 Oct 2013, In : Genome Research.

    Research output: Contribution to journalJournal articleResearchpeer-review

  163. Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators

    Scheibe, M., Arnoult, N., Kappei, D., Buchholz, F., Decottignies, A., Butter, F. & Mann, Matthias, 22 Oct 2013, In : Genome Research.

    Research output: Contribution to journalJournal articleResearchpeer-review

  164. DEAD box protein DDX1 regulates cytoplasmic localization of KSRP

    Chou, C., Lin, W., Lin, C., Luber, C. A., Godbout, R., Mann, Matthias & Chen, C., 4 Sep 2013, In : P L o S One. 8, 9, e73752.

    Research output: Contribution to journalJournal articleResearch

  165. SILAC-based proteomics of human primary endothelial cell morphogenesis unveils tumor angiogenic markers

    Zanivan, S., Maione, F., Hein, M. Y., Hernández-Fernaud, J. R., Ostasiewicz, P., Giraudo, E. & Mann, Matthias, 26 Aug 2013, In : Molecular & Cellular Proteomics.

    Research output: Contribution to journalJournal articleResearchpeer-review

  166. Interaction between AP-5 and the hereditary spastic paraplegia proteins SPG11 and SPG15

    Hirst, J., Borner, G. H. H., Edgar, J., Hein, M. Y., Mann, Matthias, Buchholz, F., Antrobus, R. & Robinson, M. S., Aug 2013, In : Molecular Biology of the Cell. 24, 16, p. 2558-69 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  167. Alleles of a polymorphic ETV6 binding site in DCDC2 confer risk of reading and language impairment

    Powers, N. R., Eicher, J. D., Butter, F., Kong, Y., Miller, L. L., Ring, S. M., Mann, Matthias & Gruen, J. R., 11 Jul 2013, In : American Journal of Human Genetics. 93, 1, p. 19-28 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  168. HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment

    Kappei, D., Butter, F., Benda, C., Scheibe, M., Draškovič, I., Stevense, M., Novo, C. L., Basquin, C., Araki, M., Araki, K., Krastev, D. B., Kittler, R., Jessberger, R., Londoño-Vallejo, J. A., Mann, Matthias & Buchholz, F., 12 Jun 2013, In : E M B O Journal. 32, 12, p. 1681-701 21 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  169. High performance computational analysis of large-scale proteome data sets to assess incremental contribution to coverage of the human genome

    Neuhauser, N., Nagaraj, N., McHardy, P., Zanivan, S., Scheltema, R., Cox, J. & Mann, Matthias, 7 Jun 2013, In : Journal of Proteome Research. 12, 6, p. 2858-68 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  170. A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics

    Marx, H., Lemeer, S., Schliep, J. E., Matheron, L., Mohammed, S., Cox, J., Mann, Matthias, Heck, A. J. R. & Kuster, B., Jun 2013, In : Nature Biotechnology. 31, 6, p. 557-64 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  171. Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse

    Geiger, T., Velic, A., Macek, B., Lundberg, E., Kampf, C., Nagaraj, N., Uhlen, M., Cox, J. & Mann, Matthias, Jun 2013, In : Molecular & Cellular Proteomics. 12, 6, p. 1709-22 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  172. Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae

    Klass, D. M., Scheibe, M., Butter, F., Hogan, G. J., Mann, Matthias & Brown, P. O., Jun 2013, In : Genome Research. 23, 6, p. 1028-38 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  173. β1- and αv-class integrins cooperate to regulate myosin II during rigidity sensing of fibronectin-based microenvironments

    Schiller, H. B., Hermann, M., Polleux, J., Vignaud, T., Zanivan, S., Friedel, C. C., Sun, Z., Raducanu, A., Gottschalk, K., Théry, M., Mann, Matthias & Fässler, R., Jun 2013, In : Nature Cell Biology. 15, 6, p. 625-36 12 p.

    Research output: Contribution to journalJournal articleResearch

  174. The chromodomain helicase Chd4 is required for Polycomb-mediated inhibition of astroglial differentiation

    Sparmann, A., Xie, Y., Verhoeven, E., Vermeulen, M., Lancini, C., Gargiulo, G., Hulsman, D., Mann, Matthias, Knoblich, J. A. & van Lohuizen, M., 29 May 2013, In : E M B O Journal. 32, 11, p. 1598-612 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  175. Stabilization of integrin-linked kinase by the Hsp90-CHIP axis impacts cellular force generation, migration and the fibrotic response

    Radovanac, K., Morgner, J., Schulz, J., Blumbach, K., Patterson, C., Geiger, T., Mann, Matthias, Krieg, T., Eckes, B., Fässler, R. & Wickström, S. A., 15 May 2013, In : E M B O Journal. 32, 10, p. 1409-24 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  176. A SILAC-based approach identifies substrates of caspase-dependent cleavage upon TRAIL-induced apoptosis

    Stoehr, G., Schaab, C., Graumann, J. & Mann, Matthias, May 2013, In : Molecular & Cellular Proteomics. 12, 5, p. 1436-50 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  177. Protein correlation profiles identify lipid droplet proteins with high confidence

    Krahmer, N., Hilger, M., Kory, N., Wilfling, F., Stoehr, G., Mann, Matthias, Farese, R. V. & Walther, T. C., May 2013, In : Molecular & Cellular Proteomics. 12, 5, p. 1115-26 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  178. Direct proteomic quantification of the secretome of activated immune cells

    Meissner, F., Scheltema, R. A., Mollenkopf, H. & Mann, Matthias, 26 Apr 2013, In : Science (New York, N.Y.). 340, 6131, p. 475-8 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  179. Published

    In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis

    Zanivan, S., Meves, A., Behrendt, K., Schoof, E., Neilson, L. J., Cox, J., Tang, H. R., Kalna, G., van Ree, J. H., van Deursen, J. M., Trempus, C. S., Machesky, L. M., Linding, R., Wickström, S. A., Fässler, R. & Mann, Matthias, 21 Feb 2013, In : Cell Reports. 3, 2, p. 552-566 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  180. Published

    The Coming Age of Complete, Accurate, and Ubiquitous Proteomes

    Mann, Matthias, Kulak, N. A., Nagaraj, N. & Cox, J., 21 Feb 2013, In : Molecular Cell. 49, 4, p. 583-590 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  181. A systematic mammalian genetic interaction map reveals pathways underlying ricin susceptibility

    Bassik, M. C., Kampmann, M., Lebbink, R. J., Wang, S., Hein, M. Y., Poser, I., Weibezahn, J., Horlbeck, M. A., Chen, S., Mann, Matthias, Hyman, A. A., Leproust, E. M., McManus, M. T. & Weissman, J. S., 14 Feb 2013, In : Cell. 152, 4, p. 909-22 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  182. Proteomic and genetic analyses demonstrate that Plasmodium berghei blood stages export a large and diverse repertoire of proteins

    Pasini, E. M., Braks, J. A., Fonager, J., Klop, O., Aime, E., Spaccapelo, R., Otto, T. D., Berriman, M., Hiss, J. A., Thomas, A. W., Mann, Matthias, Janse, C. J., Kocken, C. H. M. & Franke-Fayard, B., Feb 2013, In : Molecular & Cellular Proteomics. 12, 2, p. 426-48 23 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  183. Published

    Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins

    Tyanova, S., Frishman, D., Cox, J., Mann, Matthias & Olsen, Jesper Velgaard, 10 Jan 2013, In : P L o S Computational Biology (Online). 9, 1, p. e1002842 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  184. Published

    Quantification of the N-glycosylated secretome by super-SILAC during breast cancer progression and in human blood Samples

    Boersema, P. J., Geiger, T., Wiśniewski, J. R. & Mann, Matthias, 1 Jan 2013, In : Molecular & Cellular Proteomics. 12, 1, p. 158-171 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  185. Proteomic approaches in circadian biology

    Robles, M. S. & Mann, Matthias, 2013, Handbook of experimental pharmacology: Circadian Clocks. p. 389-407 19 p. (Handbook of Experimental Pharmacology).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterCommunication

  186. Published

    The SH2 domain interaction landscape

    Tinti, M., Kiemer, L., Costa, S., Miller, M. L., Sacco, F., Olsen, Jesper Velgaard, Carducci, M., Paoluzi, S., Langone, F., Workman, C., Blom, N., Machida, K., Thompson, C. M., Schutkowski, M., Brunak, Søren, Mann, Matthias, Mayer, B. J., Castagnoli, L. & Cesareni, G., 2013, In : Cell Reports. 3, 4, p. 1293-1305 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  187. The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell

    Mann, K. & Mann, Matthias, 2013, In : Proteome Science. 11, 1, p. 40

    Research output: Contribution to journalJournal articleResearchpeer-review

  188. 2012
  189. Published

    Advancing cell biology through proteomics in space and time (PROSPECTS)

    Lamond, A. I., Uhlen, M., Horning, S., Makarov, A., Robinson, C. V., Serrano, L., Hartl, F. U., Baumeister, W., Werenskiold, A. K., Mann, Matthias, Andersen, J. S., Vorm, O., Linial, M. & Aebersold, R., 1 Mar 2012, In : Molecular & Cellular Proteomics. 11, 3, 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  190. Published

    Proteomics for biomedicine: A half-completed journey

    Mann, Matthias, 1 Feb 2012, In : EMBO Molecular Medicine. 4, 2, p. 75-77 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  191. Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma

    Wiśniewski, J. R., Ostasiewicz, P., Duś, K., Zielińska, D. F., Gnad, F. & Mann, Matthias, 1 Jan 2012, In : Molecular Systems Biology. 8, 611.

    Research output: Contribution to journalJournal articleResearchpeer-review

  192. 1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data

    Cox, J. & Mann, Matthias, 2012, In : B M C Bioinformatics. 13 Suppl 16, p. S12

    Research output: Contribution to journalJournal articleResearchpeer-review

  193. Published

    Correction to Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation

    Nagaraj, N., D'Souza, R. C. J., Cox, J., Olsen, Jesper Velgaard & Mann, Matthias, 2012, In : Journal of Proteome Research.

    Research output: Contribution to journalJournal articleResearchpeer-review

  194. Published

    Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response

    Beli, P., Lukashchuk, N., Wagner, S. A., Weinert, B. T., Olsen, Jesper Velgaard, Baskcomb, L., Mann, Matthias, Jackson, S. P. & Choudhary, Chuna Ram, 2012, In : Molecular Cell. 46, 2, p. 212-25 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  195. 2011
  196. Published

    A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles

    Wagner, S. A., Beli, P., Weinert, B. T., Nielsen, Michael Lund, Cox, J., Mann, Matthias & Choudhary, Chuna Ram, 1 Oct 2011, In : Molecular and Cellular Proteomics. 10, 10, p. M111.013284

    Research output: Contribution to journalJournal articleResearchpeer-review

  197. Published

    Quantitative, high-resolution proteomics for data-driven systems biology

    Cox, J. & Mann, Matthias, 7 Jul 2011, In : Annual Review of Biochemistry. 80, p. 273-299 27 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  198. Published

    Andromeda - a peptide search engine integrated into the MaxQuant environment

    Cox, J., Neuhauser, N., Michalski, A., Scheltema, R. A., Olsen, Jesper Velgaard & Mann, Matthias, 1 Apr 2011, In : Journal of Proteome Research. 10, 4, p. 1794-805 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  199. Published

    Effective representation and storage of mass spectrometry-based proteomic data sets for the scientific community

    Olsen, Jesper Velgaard & Mann, Matthias, 1 Jan 2011, In : Science Signaling. 4, 160, p. pe7

    Research output: Contribution to journalJournal articleResearchpeer-review

  200. Published

    System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation

    Rigbolt, K. T. G., Prokhorova, T., Akimov, V., Løkkegaard, Jeanette, Johansen, P. T., Kratchmarova, I., Kassem, M. S. E., Mann, Matthias, Olsen, Jesper Velgaard & Blagoev, B., 2011, In : Science Signaling. 4, 164, p. rs3

    Research output: Contribution to journalJournal articleResearchpeer-review

  201. 2010
  202. Published

    Decoding signalling networks by mass spectrometry-based proteomics

    Choudhary, Chuna Ram & Mann, Matthias, 1 Jun 2010, In : Nature Reviews. Molecular Cell Biology. 11, 6, p. 427-39 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  203. Published

    Yeast expression proteomics by high-resolution mass spectrometry

    Walther, T. C., Olsen, Jesper Velgaard & Mann, Matthias, 1 Jan 2010, In : Methods in Enzymology. 470, p. 259-80 22 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  204. MSQuant, an Open Source Platform for Mass Spectrometry-Based Quantitative Proteomics

    Mortensen, P., Gouw, J. W., Olsen, Jesper Velgaard, Ong, S., Rigbolt, K. T. G., Bunkenborg, J., Cox, J., Foster, L. J., Heck, A. J. R., Blagoev, B., Andersen, J. S. & Mann, Matthias, Jan 2010, In : Journal of Proteome Research.

    Research output: Contribution to journalJournal articleResearchpeer-review

  205. Published

    Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

    Olsen, Jesper Velgaard, Vermeulen, M., Santamaria, A., Kumar, C., Miller, M. L., Jensen, Lars Juhl, Gnad, F., Cox, J., Jensen, T. S., Nigg, E. A., Brunak, Søren & Mann, Matthias, 2010, In : Science Signaling. 3, 104, p. ra3 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  206. 2009
  207. A dual pressure linear ion trap orbitrap instrument with very high sequencing speed

    Olsen, Jesper Velgaard, Schwartz, J. C., Griep-Raming, J., Nielsen, Michael Lund, Damoc, E., Denisov, E., Lange, O., Remes, P., Taylor, D., Splendore, M., Wouters, E. R., Senko, M., Makarov, A., Mann, Matthias & Horning, S., 2009, In : Molecular and Cellular Proteomics. 8, 12, p. 2759-69 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  208. Global and site-specific quantitative phosphoproteomics: principles and applications

    Macek, B., Mann, Matthias & Olsen, J. V., 2009, In : Annual Review of Pharmacology and Toxicology. 49, p. 199-221 22 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  209. Published

    Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics

    Pan, C., Olsen, Jesper Velgaard, Daub, H. & Mann, Matthias, 2009, In : Molecular and Cellular Proteomics. 8, 12, p. 2796-808 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  210. Published

    High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast

    Gnad, F., de Godoy, L. M. F., Cox, J., Neuhauser, N., Ren, S., Olsen, Jesper Velgaard & Mann, Matthias, 2009, In : Proteomics. 9, 20, p. 4642-4652 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  211. Published

    Lysine acetylation targets protein complexes and co-regulates major cellular functions

    Choudhary, Chuna Ram, Kumar, C., Gnad, F., Nielsen, Michael Lund, Rehman, M., Walther, T. C., Olsen, Jesper Velgaard & Mann, Matthias, 2009, In : Science. 325, 5942, p. 834-40 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  212. Published

    Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes

    Choudhary, Chuna Ram, Olsen, Jesper Velgaard, Brandts, C., Cox, J., Reddy, P. N. G., Böhmer, F. D., Gerke, V., Schmidt-Arras, D., Berdel, W. E., Müller-Tidow, C., Mann, Matthias & Serve, H., 2009, In : Molecular Cell. 36, 2, p. 326-39 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  213. 2008
  214. Identification of new chicken egg proteins by mass spectrometry-based proteomic analysis

    Mann, K., Olsen, Jesper Velgaard, MaĉEk, B., Gnad, F. & Mann, Matthias, Jun 2008, In : World's Poultry Science Journal. 64, 2, p. 209-218 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  215. The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis

    Macek, B., Mijakovic, I., Olsen, Jesper Velgaard, Gnad, F., Kumar, C., Jensen, P. R. & Mann, Matthias, Feb 2008, In : Molecular and Cellular Proteomics. 6, 4, p. 697-707 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  216. Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors

    Pan, C., Gnad, F., Olsen, Jesper Velgaard & Mann, Matthias, 2008, In : Proteomics. 8, 21, p. 4534-46 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  217. 2007
  218. Nanoelectrospray peptide mapping revisited: Composite survey spectra allow high dynamic range protein characterization without LCMS on an orbitrap mass spectrometer

    Lu, A., Waanders, L. F., Almeida, R., Li, G., Allen, M., Cox, J., Olsen, Jesper Velgaard, Bonaldi, T. & Mann, Matthias, 1 Dec 2007, In : International Journal of Mass Spectrometry. 268, 2-3, p. 158-167 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  219. MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes

    Zhang, Y., Zhang, Y., Adachi, J., Olsen, Jesper Velgaard, Shi, R., de Souza, G., Pasini, E., Foster, L. J., Macek, B., Zougman, A., Kumar, C., Wisniewski, J. R., Jun, W. & Mann, Matthias, Jan 2007, In : Nucleic Acids Research. 35, Database issue, p. D771-9

    Research output: Contribution to journalJournal articleResearchpeer-review

  220. A mass spectrometry-friendly database for cSNP identification

    Schandorff, S., Olsen, Jesper Velgaard, Bunkenborg, J., Blagoev, B., Zhang, Y., Andersen, J. S. & Mann, Matthias, 2007, In : Nature Methods. 4, 6, p. 465-6 1 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  221. Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification

    Notenboom, V., Hibbert, R. G., van Rossum-Fikkert, S. E., Olsen, Jesper Velgaard, Mann, Matthias & Sixma, T. K., 2007, In : Nucleic Acids Research. 35, 17, p. 5819-30 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  222. Higher-energy C-trap dissociation for peptide modification analysis

    Olsen, Jesper Velgaard, Macek, B., Lange, O., Makarov, A., Horning, S. & Mann, Matthias, 2007, In : Nature Methods. 4, 9, p. 709-12 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  223. Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation

    Knipscheer, P., van Dijk, W. J., Olsen, Jesper Velgaard, Mann, Matthias & Sixma, T. K., 2007, In : EMBO Journal. 26, 11, p. 2797-807 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  224. PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

    Gnad, F., Ren, S., Cox, J., Olsen, Jesper Velgaard, Macek, B., Oroshi, M. & Mann, Matthias, 2007, In : Genome Biology. 8, 11, p. R250

    Research output: Contribution to journalJournal articleResearchpeer-review

  225. Phosphoproteins of the chicken eggshell calcified layer

    Mann, K., Olsen, Jesper Velgaard, Macek, B., Gnad, F. & Mann, Matthias, 2007, In : Proteomics. 7, 1, p. 106-15 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  226. Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation

    Macek, B., Gnad, F., Soufi, B., Kumar, C., Olsen, Jesper Velgaard, Mijakovic, I. & Mann, Matthias, 2007, In : Molecular and Cellular Proteomics. 7, 2, p. 299-307 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  227. Quantitative proteomic assessment of very early cellular signaling events

    Dengjel, J., Akimov, V., Olsen, Jesper Velgaard, Bunkenborg, J., Mann, Matthias, Blagoev, B. & Andersen, J. S., 2007, In : Nature Biotechnology. 25, 5, p. 566-8 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  228. Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: mapping of neurotransmitter receptors and ion channels

    Olsen, Jesper Velgaard, Nielsen, P. A., Andersen, J. R., Mann, Matthias & Wisniewski, J. R., 2007, In : Brain Research. 1134, 1, p. 95-106 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  229. The low molecular weight proteome of Halobacterium salinarum

    Klein, C., Aivaliotis, M., Olsen, Jesper Velgaard, Falb, M., Besir, H., Scheffer, B., Bisle, B., Tebbe, A., Konstantinidis, K., Siedler, F., Pfeiffer, F., Mann, Matthias & Oesterhelt, D., 2007, In : Journal of Proteome Research. 6, 4, p. 1510-8 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  230. 2006
  231. Published

    Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli

    Kruse, Thomas, Blagoev, B., Løbner-Olesen, Anders, Wachi, M., Sasaki, K., Iwai, N., Mann, Matthias & Gerdes, K., 1 Jan 2006, In : Genes & Development. 20, 1, p. 113-124 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  232. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

    Olsen, Jesper Velgaard, Blagoev, B., Gnad, F., Macek, B., Kumar, C., Mortensen, P. & Mann, Matthias, 2006, In : Cell. 127, 3, p. 635-48 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  233. In-gel digestion for mass spectrometric characterization of proteins and proteomes

    Shevchenko, A., Tomas, H., Havlis, J., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In : Nature Protocols (Print Edition). 1, 6, p. 2856-60 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  234. Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system

    de Godoy, L. M. F., Olsen, Jesper Velgaard, de Souza, G. A., Li, G., Mortensen, P. & Mann, Matthias, 2006, In : Genome Biology. 7, 6, p. R50

    Research output: Contribution to journalJournal articleResearchpeer-review

  235. The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins

    Adachi, J., Kumar, C., Zhang, Y., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In : Genome Biology. 7, 9, p. R80

    Research output: Contribution to journalJournal articleResearchpeer-review

  236. Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer

    Macek, B., Waanders, L. F., Olsen, Jesper Velgaard & Mann, Matthias, 2006, In : Molecular and Cellular Proteomics. 5, 5, p. 949-58 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  237. 2005
  238. Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap

    Olsen, Jesper Velgaard, de Godoy, L. M. F., Li, G., Macek, B., Mortensen, P., Pesch, R., Makarov, A., Lange, O., Horning, S. & Mann, Matthias, 2005, In : Molecular and Cellular Proteomics. 4, 12, p. 2010-21 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  239. Proteomic mapping of brain plasma membrane proteins

    Nielsen, P. A., Olsen, Jesper Velgaard, Podtelejnikov, A. V., Andersen, J. R., Mann, Matthias & Wisniewski, J. R., 2005, In : Molecular and Cellular Proteomics. 4, 4, p. 402-8 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  240. Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

    Gruhler, A., Olsen, Jesper Velgaard, Mohammed, S., Mortensen, P., Faergeman, N. J., Mann, Matthias & Jensen, O. N., 2005, In : Molecular and Cellular Proteomics. 4, 3, p. 310-27 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  241. 2004
  242. HysTag--a novel proteomic quantification tool applied to differential display analysis of membrane proteins from distinct areas of mouse brain

    Olsen, Jesper Velgaard, Andersen, J. R., Nielsen, P. A., Nielsen, Michael Lund, Figeys, D., Mann, Matthias & Wisniewski, J. R., Jan 2004, In : Molecular and Cellular Proteomics. 3, 1, p. 82-92 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  243. Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation

    Olsen, Jesper Velgaard & Mann, Matthias, 2004, In : Proceedings of the National Academy of Science of the United States of America. 101, 37, p. 13417-22 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  244. Trypsin cleaves exclusively C-terminal to arginine and lysine residues

    Olsen, Jesper Velgaard, Ong, S. & Mann, Matthias, 2004, In : Molecular and Cellular Proteomics. 3, 6, p. 608-14 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  245. Tyrosine phosphoproteomics of fibroblast growth factor signaling: a role for insulin receptor substrate-4

    Hinsby, A. M., Olsen, Jesper Velgaard & Mann, Matthias, 2004, In : Journal of Biological Chemistry. 279, 45, p. 46438-47 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  246. 2003
  247. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria

    Mootha, V. K., Bunkenborg, J., Olsen, Jesper Velgaard, Hjerrild, M., Wisniewski, J. R., Stahl, E., Bolouri, M. S., Ray, H. N., Sihag, S., Kamal, M., Patterson, N., Lander, E. S. & Mann, Matthias, 2003, In : Cell. 115, 5, p. 629-40 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  248. Signaling initiated by overexpression of the fibroblast growth factor receptor-1 investigated by mass spectrometry

    Hinsby, A. M., Olsen, Jesper Velgaard, Bennett, K. L. & Mann, Matthias, 2003, In : Molecular and Cellular Proteomics. 2, 1, p. 29-36 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  249. 2000
  250. A urokinase receptor-associated protein with specific collagen binding properties

    Behrendt, Niels, Jensen, O. N., Engelholm, Lars Henning, Mørtz, E., Mann, Matthias & Danø, K., 2000, In : The Journal of Biological Chemistry. 275, 3, p. 1993-2002 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  251. 1997
  252. Identification of a novel membrane protein that interacts specifically with the upar-prourokinase complex

    Behrendt, Niels, Engelholm, Lars Henning, Jensen, O. N., Mörtz, E., Ranne, E., Mann, Matthias & Dan, K., 1997, In : Fibrinolysis and Proteolysis. 11, Supl. 3, p. 10 1 p.

    Research output: Contribution to journalConference abstract in journalResearch

ID: 5650809