Matthew James Collins

Matthew James Collins

Professor


  1. 2024
  2. E-pub ahead of print

    Beescapes – extracting pollen from historical Danish beeswax to explore honeybee foraging

    Kasso, Tuuli Marikki, Jensen, Annette Bruun, Johns, S., Roffet-Salque, M., Collins, Matthew James & Enevold, R., 2024, (E-pub ahead of print) In: Palynology. 9 p., 2288220.

    Research output: Contribution to journalJournal articlepeer-review

  3. Published

    Non-avian dinosaur eggshell calcite can contain ancient, endogenous amino acids

    Saitta, E. T., Vinther, J., Crisp, M. K., Abbott, G. D., Wheeler, L., Presslee, S., Kaye, T. G., Bull, I., Fletcher, I., Chen, X., Vidal, D., Sanguino, F., Buscalioni, Á. D., Calvo, J., Sereno, P. C., Baumgart, S. L., Pittman, M., Collins, M. J., Sakalauskaite, J., Mackie, M. & 7 others, Bello, F. D., Dickinson, M. R., Stevenson, M. A., Donohoe, P., Heck, P. R., Demarchi, B. & Penkman, K. E. H., 2024, In: Geochimica et Cosmochimica Acta. 365, p. 1-20 20 p.

    Research output: Contribution to journalJournal articlepeer-review

  4. 2023
  5. Published

    A biological reading of a palimpsest

    Viñas Caron, Laura Cristina, Rodriguez Palomo, Ismael, Fazlic, Natasha, Vnouček, J., Driscoll, Matthew James, Fiddyment, S. & Collins, Matthew James, 2023, In: iScience. 26, 6, 12 p., 106786.

    Research output: Contribution to journalJournal articlepeer-review

  6. Published

    ArcHives — combined palynological, genomic and lipid analysis of medieval wax seals

    Kasso, Tuuli Marikki, Enevold, R., Johns, S., Rangel Piñeros, Guillermo Andres, Taurozzi, Alberto John, Sutherland, Alister Harvey, Ramsøe, Max Emil Ermter, Angelova, L. V., Roffet-Salque, M., Collins, Matthew James & Carøe, C., 2023, In: Heritage Science. 11, 12 p., 11.

    Research output: Contribution to journalJournal articlepeer-review

  7. Published

    Bioarchaeological and paleogenomic profiling of the unusual Neolithic burial from Grotta di Pietra Sant’Angelo (Calabria, Italy)

    Fontani, F., Boano, R., Cinti, A., Demarchi, B., Sandron, S., Rampelli, S., Candela, M., Traversari, M., Latorre, A., Iacovera, R., Abondio, P., Sarno, S., Mackie, M., Collins, M., Radini, A., Milani, C., Petrella, E., Giampalma, E., Minelli, A., Larocca, F. & 2 others, Cilli, E. & Luiselli, D., 2023, In: Scientific Reports. 13, 15 p., 11978.

    Research output: Contribution to journalJournal articlepeer-review

  8. Published

    Bone collagen from subtropical Australia is preserved for more than 50,000 years

    Peters, C., Wang, Y., Vakil, V., Cramb, J., Dortch, J., Hocknull, S., Lawrence, R., Manne, T., Monks, C., Rössner, G. E., Ryan, H., Siversson, M., Ziegler, T., Louys, J., Price, G. J., Boivin, N. & Collins, Matthew James, 2023, In: Communications Earth and Environment. 4, 8 p., 438.

    Research output: Contribution to journalJournal articlepeer-review

  9. Published

    Grim up North? Exploring the diet of urban populations in post-medieval Greater Manchester, England, using stable isotope analysis

    Chidimuro, B., Holst, M., Newman, S., Keefe, K., Collins, Matthew James & Alexander, M., 2023, In: Archaeological and Anthropological Sciences. 15, 11, 19 p., 174.

    Research output: Contribution to journalJournal articlepeer-review

  10. Published

    Grouping groupers in the Mediterranean: Ecological baselines revealed by ancient proteins

    Winter, R. M., de Kock, W., Mackie, Meaghan, Ramsøe, Max Emil Ermter, Desiderà, E., Collins, Matthew James, Guidetti, P., Presslee, S., Alegre, M. M., Oueslati, T., Muniz, A. M., Michailidis, D., van den Hurk, Youri, Taurozzi, Alberto John & Çakirlar, C., 2023, In: Ecology and Evolution. 13, 10, 11 p., e10625.

    Research output: Contribution to journalJournal articlepeer-review

  11. Published

    Human and animal skin identified by palaeoproteomics in Scythian leather objects from Ukraine

    Brandt, Luise Ørsted, Mackie, Meaghan, Daragan, M., Collins, Matthew James & Gleba, M., 2023, In: PLoS ONE. 18, 12, 21 p., e0294129.

    Research output: Contribution to journalJournal articlepeer-review

  12. Published

    Molecular exploration of fossil eggshell uncovers hidden lineage of giant extinct bird

    Grealy, A., Miller, G. H., Phillips, M. J., Clarke, S. J., Fogel, M., Patalwala, D., Rigby, P., Hubbard, A., Demarchi, B., Collins, Matthew James, Mackie, Meaghan, Sakalauskaite, J., Stiller, Josefin, Clarke, J. A., Legendre, L. J., Douglass, K., Hansford, J., Haile, J. & Bunce, M., 2023, In: Nature Communications. 14, 14 p., 914.

    Research output: Contribution to journalJournal articlepeer-review

  13. Published

    North and South: Exploring isotopic analysis of bone carbonates and collagen to understand post-medieval diets in London and northern England

    Chidimuro, B., Doherty, S., Finch, J., Ponce, P., Eggington, J., Delaney, S., Speller, C., Collins, Matthew James, Holst, M. & Alexander, M., 2023, In: American journal of biological anthropology. 182, 1, p. 126-142 17 p.

    Research output: Contribution to journalJournal articlepeer-review

  14. Published

    Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data

    Anila Bhuvanendran Nair, Bharath, Palomo, I. R., Markussen, Bo, Wiuf, Carsten, Fiddyment, S. & Collins, Matthew James, 2023, In: Peer Community Journal. 3, 18 p., e10.

    Research output: Contribution to journalJournal articlepeer-review

  15. Published

    Survival of environmental DNA in sediments: Mineralogic control on DNA taphonomy

    Freeman, C. L., Dieudonné, L., Agbaje, Oluwatoosin Bunmi Adebayo, Žure, M., Sanz, J. Q., Collins, Matthew James & Sand, Karina Krarup, 2023, In: Environmental DNA. 5, 6, p. 1691-1705 15 p.

    Research output: Contribution to journalJournal articlepeer-review

  16. Published

    The prelude to industrial whaling: identifying the targets of ancient European whaling using zooarchaeology and collagen mass-peptide fingerprinting

    van den Hurk, Y., Sikström, F., Amkreutz, L., Bleasdale, M., Borvon, A., Ephrem, B., Fernández-Rodríguez, C., Gibbs, H. M. B., Jonsson, L., Lehouck, A., Cedeira, J. M., Meng, S., Monge, R., Moreno, M., Nabais, M., Nores, C., Pis-Millán, J. A., Riddler, I., Schmölcke, U., Segschneider, M. & 6 others, Speller, C., Vretemark, M., Wickler, S., Collins, Matthew James, Nadeau, M. J. & Barrett, J. H., 2023, In: Royal Society Open Science. 10, 9, 16 p., 230741.

    Research output: Contribution to journalJournal articlepeer-review

  17. Published

    Threads of memory: Reviving the ornament of a dead child at the Neolithic village of Ba`ja (Jordan)

    Alarashi, H., Benz, M., Gresky, J., Burkhardt, A., Fischer, A., Gourichon, L., Gerlitzki, M., Manfred, M., Sakalauskaite, J., Demarchi, B., Mackie, Meaghan, Collins, Matthew James, Odriozola, C. P., Garrido Cordero, J. Á., Avilés, M. Á., Vigorelli, L., Re, A. & Gebel, H. G. K., 2023, In: PLoS ONE. 18, 8, 54 p., e0288075.

    Research output: Contribution to journalJournal articlepeer-review

  18. Published

    Tracking the British agricultural revolution through the isotopic analysis of dated parchment

    Doherty, S. P., Alexander, M. M., Henderson, S., Newton, J., Finch, J. & Collins, Matthew James, 2023, In: Scientific Reports. 13, 7 p., 61.

    Research output: Contribution to journalJournal articlepeer-review

  19. Published
  20. 2022
  21. Published

    Data From "A Biocodicological Analysis of the Medieval Library and Archive From Orval Abbey, Belgium"

    Herrera Bethencourt, Jorsua, Rodriguez Palomo, I., Hickinbotham, S., Anila Bhuvanendran Nair, Bharath, Soncin, S., Dieu, M., Collins, Matthew James & Deparis, O., 22 Feb 2022, In: Journal of open archaeology data. 10, 7 p., 1.

    Research output: Contribution to journalJournal articlepeer-review

  22. Published

    A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA

    Kjær, K. H., Pedersen, M. W., De Sanctis, B., De Cahsan, B., Korneliussen, T. S., Michelsen, C. S., Sand, K. K., Jelavić, S., Ruter, A. H., Schmidt, A. M. A., Kjeldsen, K. K., Tesakov, A. S., Snowball, I., Gosse, J. C., Alsos, I. G., Wang, Y., Dockter, C., Rasmussen, M., Jørgensen, M. E., Skadhauge, B. & 19 others, Prohaska, Ana, Kristensen, J. Å., Bjerager, M., Allentoft, Morten Erik, Coissac, E., Rouillard, Alexandra, Simakova, A., Fernandez Guerra, Antonio, Bowler, C., Macias-Fauria, M., Vinner, Lasse, Welch, J. J., Hidy, A. J., Sikora, Martin, Collins, Matthew James, Durbin, R., Larsen, Nicolaj Krog, Willerslev, Eske & PhyloNorway Consortium, P. C., 2022, In: Nature. 612, 7939, p. 283-291 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  23. Published

    A modern baseline for the paired isotopic analysis of skin and bone in terrestrial mammals

    Doherty, S. P., Collins, Matthew James, Harris, A. J. T., Sistiaga Gutierrez, Maria Ainara, Newton, J. & Alexander, M. M., 2022, In: Royal Society Open Science. 9, 1, 11 p., 211587.

    Research output: Contribution to journalJournal articlepeer-review

  24. Published

    Ancient proteins resolve controversy over the identity of Genyornis eggshell

    Demarchi, B., Stiller, Josefin, Grealy, A., Mackie, Meaghan, Deng, Y., Gilbert, M Thomas P, Clarke, J., Legendre, L. J., Boano, R., Sicheritz-Pontén, Thomas, Magee, J., KU, thw266, Bunce, M., Collins, Matthew James & Miller, G., 2022, In: PNAS. 119, 43, 9 p., e2109326119.

    Research output: Contribution to journalJournal articlepeer-review

  25. Published

    Conformational analysis and water dynamics: a molecular dynamics study on the survival of a β-lactoglobulin peptide in the archaeological record

    Fonseca, B., Freeman, C. L. & Collins, Matthew James, 2022, In: Chemical Physics. 561, 11 p., 111602.

    Research output: Contribution to journalJournal articlepeer-review

  26. Published

    Histological and stable isotope analysis of archeological bones from St. Rombout's cemetery (Mechelen, Belgium): Intrasite, intraindividual, and intrabone variability

    Kontopoulos, Ioannis, Van de Vijver, K., Robberechts, B., von Tersch, M., Turner-Walker, G., Penkman, K. & Collins, Matthew James, 2022, In: International Journal of Osteoarchaeology. 32, 5, p. 1142-1156 15 p.

    Research output: Contribution to journalJournal articlepeer-review

  27. Published

    Isotope analysis of human dental calculus δ13CO32-: Investigating a potential new proxy for sugar consumption

    Chidimuro, B., Mundorff, A., Speller, C., Radini, A., Boudreault, N., Lucas, M., Holst, M., Lamb, A., Collins, Matthew James & Alexander, M., 2022, In: Rapid Communications in Mass Spectrometry. 36, 11, 15 p., e9286.

    Research output: Contribution to journalJournal articlepeer-review

  28. Published

    Next Generation Lab puts Denmark's past in the hands of its future

    Brandt, Luise Ørsted, Lillemark, Marie Rathcke, Rytter, Maria, Collins, Matthew James & Tøttrup, Anders P., 2022, In: Antiquity. 96, 385, p. 221-228 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  29. Published

    Palaeoproteomics identifies beaver fur in Danish high-status Viking Age burials - direct evidence of fur trade

    Brandt, Luise Ørsted, Taurozzi, Alberto John, Mackie, Meaghan, Sinding, Mikkel Holger Strander, Vieira, Filipe Garrett, Schmidt, A. L., Rimstad, C., Collins, Matthew James & Mannering, U., 2022, In: PLoS ONE. 17, 7, 14 p., e0270040.

    Research output: Contribution to journalJournal articlepeer-review

  30. Published

    Paleoproteomics

    Warinner, C., Korzow Richter, K. & Collins, Matthew James, 2022, In: Chemical Reviews. 122, 16, p. 13401-13446 46 p.

    Research output: Contribution to journalReviewpeer-review

  31. Published
  32. Published

    Survival of mineral-bound peptides into the Miocene

    Demarchi, B., Mackie, Meaghan, Li, Z., Deng, T., Collins, Matthew James & Clarke, J., 2022, In: eLife. 11, 9 p., e82849.

    Research output: Contribution to journalJournal articlepeer-review

  33. Published

    The Vienna Genesis: An Example of Late Antique Purple Parchment

    Hofmann, C., Vnouček, J., Rabitsch, S., Aceto, M., Melo, M. J., Malissa, A., Uhlir, K., Griesser, M., Hradil, K., Erlach, R., Quandt, A., Sonderegger, J., Fiddyment, S. & Collins, Matthew James, 2022, In: Restaurator. 43, 1-2, p. 3-33 31 p.

    Research output: Contribution to journalJournal articlepeer-review

  34. 2021
  35. Published

    A biocodicological analysis of the medieval library and archive from Orval Abbey, Belgium

    Ruffini-Ronzani, N., Nieus, J., Soncin, S., Hickinbotham, S., Dieu, M., Bouhy, J., Charles, C., Ruzzier, C., Falmagne, T., Hermand, X., Collins, Matthew James & Deparis, O., 2021, In: Royal Society Open Science. 8, 6, 14 p., 210210.

    Research output: Contribution to journalJournal articlepeer-review

  36. Published

    Assessing the degradation of ancient milk proteins through site-specific deamidation patterns

    Ramsøe, A., Crispin, M., Mackie, Meaghan, McGrath, K., Fischer, R., Demarchi, B., Collins, Matthew James, Hendy, J. & Speller, C., 2021, In: Scientific Reports. 11, 1, 14 p., 7795.

    Research output: Contribution to journalJournal articlepeer-review

  37. Published

    Bone degradation at five Arctic archaeological sites: Quantifying the importance of burial environment and bone characteristics

    Matthiesen, H., Eriksen, Anne Marie Høier, Hollesen, J. & Collins, Matthew James, 2021, In: Journal of Archaeological Science. 125, 9 p., 105296.

    Research output: Contribution to journalJournal articlepeer-review

  38. Published

    Dire wolves were the last of an ancient New World canid lineage

    Perri, A. R., Mitchell, K. J., Mouton, A., Alvarez-Carretero, S., Hulme-Beaman, A., Haile, J., Jamieson, A., Meachen, J., Lin, A. T., Schubert, B. W., Ameen, C., Antipina, E. E., Bover, P., Brace, S., Carmagnini, A., Carøe, C., Samaniego Castruita, J. A., Chatters, J. C., Dobney, K., dos Reis, M. & 29 others, Evin, A., Gaubert, P., Gopalakrishnan, Shyam, Gower, Graham, Heiniger, H., Helgen, K. M., Kapp, J., Kosintsev, P. A., Linderholm, A., Ozga, A. T., Presslee, S., Salis, A. T., Saremi, N. F., Shew, C., Skerry, K., Taranenko, D. E., Thompson, M., Sablin, M. V., Kuzmin, Y. V., Collins, Matthew James, Sinding, M. S., Gilbert, M Thomas P, Stone, A. C., Shapiro, B., Van Valkenburgh, B., Wayne, R. K., Larson, G., Cooper, A. & Frantz, L. A. F., 2021, In: Nature. 591, p. 87-91

    Research output: Contribution to journalJournal articlepeer-review

  39. Published

    Girding the loins? Direct evidence of the use of a medieval English parchment birthing girdle from biomolecular analysis

    Fiddyment, S., Goodison, N. J., Brenner, E., Signorello, S., Price, K. & Collins, Matthew James, 2021, In: Royal Society Open Science. 8, 3, 202055.

    Research output: Contribution to journalJournal articlepeer-review

  40. Published

    Measuring the impact of parchment production on skin collagen stable isotope (δ13C and δ15N) values

    Doherty, S., Alexander, M. M., Vnoucek, J., Newton, J. & Collins, Matthew James, 2021, In: STAR: Science & Technology of Archaeological Research. 7, 1, p. 1-12 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  41. Published

    On the standardization of ZooMS nomenclature

    Brown, S., Douka, K., Collins, Matthew James & Richter, K. K., 2021, In: Journal of Proteomics. 235, 6 p., 104041.

    Research output: Contribution to journalJournal articlepeer-review

  42. Published

    Palaeoproteomic analyses of dog palaeofaeces reveal a preserved dietary and host digestive proteome

    Runge, Anne Kathrine Wiborg, Hendy, J., Richter, K. K., Masson-MacLean, E., Britton, K., Mackie, Meaghan, McGrath, K., Collins, Matthew James, Cappellini, Enrico & Speller, C., 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1954, 10 p., 20210020.

    Research output: Contribution to journalJournal articlepeer-review

  43. Published

    Palaeoproteomics confirm earliest domesticated sheep in southern Africa ca. 2000 BP

    Coutu, A. N., Taurozzi, Alberto John, Mackie, Meaghan, Jensen, Theis Zetner Trolle, Collins, Matthew James & Sealy, J., 2021, In: Scientific Reports. 11, 1, 11 p., 6631.

    Research output: Contribution to journalJournal articlepeer-review

  44. Published

    Scratching the surface: the use of sheepskin parchment to deter textual erasure in early modern legal deeds

    Doherty, S. P., Henderson, S., Fiddyment, S., Finch, J. & Collins, Matthew James, 2021, In: Heritage Science. 9, 1, 6 p., 29.

    Research output: Contribution to journalJournal articlepeer-review

  45. Published

    The degradation of intracrystalline mollusc shell proteins: A proteomics study of Spondylus gaederopus

    Sakalauskaite, J., Mackie, Meaghan, Taurozzi, Alberto John, Collins, Matthew James, Marin, F. & Demarchi, B., 2021, In: B B A - Proteins and Proteomics. 1869, 12, 19 p., 140718.

    Research output: Contribution to journalJournal articlepeer-review

  46. 2020
  47. Published

    An integrated analysis of Maglemose bone points reframes the Early Mesolithic of Southern Scandinavia

    Jensen, Theis Zetner Trolle, Sjöström, A., Fischer, A., Rosengren, E., Lanigan, Liam Thomas, Bennike, O., Richter, K. K., Gron, K. J., Mackie, Meaghan, Mortensen, M. F., Sørensen, L., Chivall, D., Iversen, K. H., Taurozzi, Alberto John, Olsen, J., Schroeder, Hannes, Milner, N., Sørensen, Mikkel & Collins, Matthew James, 14 Oct 2020, In: Scientific Reports. 10, 1, 12 p., 17244.

    Research output: Contribution to journalJournal articlepeer-review

  48. Published

    Multi-protease analysis of Pleistocene bone proteomes

    Lanigan, Liam Thomas, Mackie, Meaghan, Feine, S., Hublin, J., Schmitz, R. W., Wilcke, A., Collins, Matthew James, Cappellini, Enrico, Olsen, Jesper Velgaard, Taurozzi, Alberto John & Welker, Frido, 30 Sep 2020, In: Journal of Proteomics. 228, 11 p., 103889.

    Research output: Contribution to journalJournal articlepeer-review

  49. Published

    Screening archaeological bone for palaeogenetic and palaeoproteomic studies

    Kontopoulos, I., Penkman, K., Mullin, V. E., Winkelbach, L., Unterländer, M., Scheu, A., Kreutzer, S., Hansen, H. B., Margaryan, Ashot, Teasdale, M. D., Gehlen, B., Street, M., Lynnerup, Niels, Liritzis, I., Sampson, A., Papageorgopoulou, C., Allentoft, Morten Erik, Burger, J., Bradley, D. G. & Collins, Matthew James, Jun 2020, In: PLoS ONE. 15, 6, 17 p., e0235146.

    Research output: Contribution to journalJournal articlepeer-review

  50. Published

    What's the catch? Archaeological application of rapid collagen-based species identification for Pacific Salmon

    Korzow Richter, K., McGrath, K., Masson-MacLean, E., Hickinbotham, S., Tedder, A., Britton, K., Bottomley, Z., Dobney, K., Hulme-Beaman, A., Zona, M., Fischer, R., Collins, Matthew James & Speller, C. F., Apr 2020, In: Journal of Archaeological Science. 116, 16 p., 105116.

    Research output: Contribution to journalJournal articlepeer-review

  51. Published

    DeamiDATE 1.0: Site-specific deamidation as a tool to assess authenticity of members of ancient proteomes

    Ramsøe, A., van Heekeren, V., Ponce, P., Fischer, R., Barnes, I., Speller, C. & Collins, Matthew James, Mar 2020, In: Journal of Archaeological Science. 115, 10 p., 105080.

    Research output: Contribution to journalJournal articlepeer-review

  52. Published

    A conscious rethink: Why is brain tissue commonly preserved in the archaeological record? Commentary on: Petrone P, Pucci P, Niola M, et al. Heat-induced brain vitrification from the Vesuvius eruption in C.E. 79. N Engl J Med 2020;382:383-4. DOI: 10.1056/NEJMc1909867

    Morton-Hayward, A. L., Thompson, T., Thomas-Oates, J. E., Buckley, S., Petzold, A., Ramsøe, Abigail Daisy, O'Connor, S. & Collins, Matthew James, 2020, In: STAR: Science & Technology of Archaeological Research. 6, 1, p. 87-95 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  53. Published

    Bone biodeterioration - The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community

    Eriksen, Anne Marie Høier, Nielsen, Tue Kjærgaard, Matthiesen, H., Carøe, C., Hansen, Lars Hestbjerg, Gregory, D. J., Turner-Walker, G., Collins, Matthew James & Gilbert, M Thomas P, 2020, In: PLoS ONE. 15, 10 October, 24 p., e0240512.

    Research output: Contribution to journalJournal articlepeer-review

  54. Published

    Comparing biological and pathological factors affecting osteocalcin concentrations in archaeological skeletal remains

    Scott, A. B., Taurozzi, Alberto John, Hughes, N., Pedersen, D. D., Kontopoulos, Ioannis, Mackie, Meaghan & Collins, Matthew James, 2020, In: Journal of Archaeological Science: Reports. 34, Part A, 9 p., 102573.

    Research output: Contribution to journalJournal articlepeer-review

  55. Published

    DNA preserved in jetsam whale ambergris

    Macleod, R., Sinding, M. H. S., Olsen, Morten Tange, Collins, Matthew James & Rowland, S. J., 2020, In: Biology Letters. 16, 2, 6 p., 20190819 .

    Research output: Contribution to journalJournal articlepeer-review

  56. Published

    Histological study of sheep skin transformation during the recreation of historical parchment manufacture

    Fourneau, M., Canon, C., Van Vlaender, D., Collins, Matthew James, Fiddyment, S., Poumay, Y. & Deparis, O., 2020, In: Heritage Science. 8, 1, 7 p., 78.

    Research output: Contribution to journalJournal articlepeer-review

  57. Published

    How to get your goat: automated identification of species from MALDI-ToF spectra

    Hickinbotham, S., Fiddyment, S., Stinson, T. L. & Collins, Matthew James, 2020, In: Bioinformatics. 36, 12, p. 3719-3725 7 p.

    Research output: Contribution to journalJournal articlepeer-review

  58. Published

    Rapid loss of endogenous DNA in pig bone buried in five different environments

    Eriksen, Anne Marie Høier, Matthiesen, H., Kontopoulos, I., Gregory, D., Snoeck, C., KU, thw266, Collins, Matthew James & Gilbert, M Thomas P, 2020, In: Archaeometry. 62, 4, p. 827-846 20 p.

    Research output: Contribution to journalReviewpeer-review

  59. Published

    Saving Bones: a direct comparison of FTIR-ATR, whole bone percent nitrogen, and NIR

    Ryder, C. M., Sponheimer, M., Shokry, Hussein, Lazagabaster, I. A., Marom, N., Monnier, G. F., Collins, Matthew James, Deviese, T. & Higham, T., 2020, p. 243-243.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  60. Published

    The biomolecular characterization of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark

    Jensen, Theis Zetner Trolle, Mackie, Meaghan, Taurozzi, Alberto John, Lanigan, Liam Thomas, Gundelach, C., Olsen, J., Sørensen, S. A., Collins, Matthew James, Sørensen, Mikkel & Schroeder, Hannes, 2020, In: Royal Society Open Science. 7, 1, 16 p., 191172.

    Research output: Contribution to journalJournal articlepeer-review

  61. 2019
  62. Published

    Identifying Archaeological Bone via Non-Destructive ZooMS and the Materiality of Symbolic Expression: Examples from Iroquoian Bone Points

    McGrath, K., Rowsell, K., St-Pierre, C. G., Tedder, A., Foody, G., Roberts, C., Speller, C. & Collins, Matthew James, 30 Jul 2019, In: Scientific Reports. 9, 10 p., 11027.

    Research output: Contribution to journalJournal articlepeer-review

  63. Published

    Ancient cattle genomics, origins, and rapid turnover in the Fertile Crescent

    Verdugo, M. P., Mullin, V. E., Scheu, A., Mattiangeli, V., Daly, K. G., Delser, P. M., Hare, A. J., Burger, J., Collins, M. J., Kehati, R., Hesse, P., Fulton, D., Sauer, E. W., Mohaseb, F. A., Davoudi, H., Khazaeli, R., Lhuillier, J., Rapin, C., Ebrahimi, S., Khasanov, M. & 21 others, Farhad Vahidi, S. M., MacHugh, D. E., Ertuğrul, O., Koukouli-Chrysanthaki, C., Sampson, A., Kazantzis, G., Kontopoulos, I., Bulatovic, J., Stojanović, I., Mikdad, A., Benecke, N., Linstädter, J., Sablin, M., Bendrey, R., Gourichon, L., Arbuckle, B. S., Mashkour, M., Orton, D., Horwitz, L. K., Teasdale, M. D. & Bradley, D. G., 1 Jan 2019, In: Science. 365, 6449, p. 173-176 4 p.

    Research output: Contribution to journalJournal articlepeer-review

  64. Published

    A 5700 year-old human genome and oral microbiome from chewed birch pitch

    Jensen, T. Z. T., Niemann, J., Iversen, K. H., Fotakis, A. K., Gopalakrishnan, S., Vågene, Å. J., Pedersen, M. W., Sinding, M-H. S., Ellegaard, M. R., Allentoft, M. E., Lanigan, L. T., Taurozzi, A. J., Nielsen, S. H., Dee, M. W., Mortensen, M. N., Christensen, M. C., Sørensen, S. A., Collins, M. J., Gilbert, M. T. P., Sikora, M. & 2 others, Rasmussen, Simon & Schroeder, Hannes, 2019, In: Nature Communications. 10, 10 p., 5520.

    Research output: Contribution to journalJournal articlepeer-review

  65. Published

    Analysis of faecal substrates sheds light into coprostanol origin, preservation and diagenesis

    Sistiaga Gutierrez, Maria Ainara, Poyet, M., Groussin, M., Collins, Matthew James & Summons, R. E., 2019, 29th International Meeting on Organic Geochemistry. European Association of Geoscientists and Engineers, p. 1-2 (Conference Proceedings, Vol. 2019).

    Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearchpeer-review

  66. Published

    Ancient amino acids from fossil feathers in amber

    McCoy, V. E., Gabbott, S. E., Penkman, K., Collins, Matthew James, Presslee, S., Holt, J., Grossman, H., Wang, B., Kraemer, M. M. S., Delclòs, X. & Peñalver, E., 2019, In: Scientific Reports. 9, 8 p., 6420.

    Research output: Contribution to journalJournal articlepeer-review

  67. Published

    Bone diagenesis in a Mycenaean secondary burial (Kastrouli, Greece)

    Kontopoulos, I., Penkman, K., Liritzis, I. & Collins, Matthew James, 2019, In: Archaeological and Anthropological Sciences. 11, 10, p. 5213-5230

    Research output: Contribution to journalJournal articlepeer-review

  68. Published

    Enamel proteome shows that Gigantopithecus was an early diverging pongine

    Welker, Frido, Ramos Madrigal, Jazmin, Kuhlwilm, M., Liao, W., Gutenbrunner, P., de Manuel, M., Samodova-Sommer, Diana, Mackie, Meaghan, Allentoft, Morten Erik, Bacon, A., Collins, Matthew James, Cox, J., Lalueza-Fox, C., Olsen, Jesper Velgaard, Demeter, Fabrice, Wang, W., Marques-Bonet, T. & Cappellini, Enrico, 2019, In: Nature. 576, p. 262-265

    Research output: Contribution to journalJournal articlepeer-review

  69. Ionisation bias undermines the use of matrix-assisted laser desorption/ionisation for estimating peptide deamidation: synthetic peptide studies demonstrate electrospray ionisation gives more reliable response ratios

    Simpson, J. P., Fascione, M., Bergström, E., Wilson, J., Collins, Matthew James, Penkman, K. E. H. & Thomas-Oates, J., 2019, In: Rapid Communications in Mass Spectrometry. 33, 12, p. 1049-1057 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  70. Published

    Medieval women's early involvement in manuscript production suggested by lapis lazuli identification in dental calculus

    Radini, A., Tromp, M., Beach, A., Tong, E., Speller, C., McCormick, M., Dudgeon, J. V., Collins, Matthew James, Rühli, F., Kröger, R. & Warinner, C., 2019, In: Science Advances. 26, 2, 9 p., eaau7126.

    Research output: Contribution to journalJournal articlepeer-review

  71. Published

    New insights into Neolithic milk consumption through proteomic analysis of dental calculus

    Charlton, S., Ramsøe, Abigail Daisy, Collins, Matthew James, Craig, O., Fischer, R., Alexander, M. & Speller, C., 2019, In: Archaeological and Anthropological Sciences. 11, 11, p. 6183-6196 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  72. Published

    Palaeoproteomics resolves sloth relationships

    Presslee, S., Slater, G. J., Pujos, F., Forasiepi, A. M., Fischer, R., Molloy, K., Mackie, M., Olsen, J. V., Kramarz, A., Taglioretti, M., Scaglia, F., Lezcano, M., Lanata, J. L., Southon, J., Feranec, R., Bloch, J., Hajduk, A., Martin, F. M., Salas Gismondi, R., Reguero, M. & 6 others, de Muizon, C., Greenwood, A., Chait, B. T., Penkman, K., Collins, Matthew James & MacPhee, R. D. E., 2019, In: Nature Ecology & Evolution. 3, p. 1121-1130

    Research output: Contribution to journalJournal articlepeer-review

  73. Published

    Petrous bone diagenesis: a multi-analytical approach

    Kontopoulos, I., Penkman, K., McAllister, G. D., Lynnerup, Niels, Damgaard, P. B., Hansen, H. B., Allentoft, Morten Erik & Collins, Matthew James, 2019, In: Palaeogeography, Palaeoclimatology, Palaeoecology. 518, p. 143-154 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  74. Published

    So you want to do biocodicology? A field guide to the biological analysis of parchment

    Fiddyment, S., Teasdale, M. D., Vnouček, J., Lévêque, É., Binois, A. & Collins, Matthew James, 2019, In: Heritage Science. 7, 10 p., 35.

    Research output: Contribution to journalReviewpeer-review

  75. 2018
  76. Published

    Ancient proteins from ceramic vessels at Çatalhöyük West reveal the hidden cuisine of early farmers

    Hendy, J., Colonese, A. C., Franz, I., Fernandes, R., Fischer, R., Orton, D., Lucquin, A., Spindler, L., Anvari, J., Stroud, E., Biehl, P. F., Speller, C., Boivin, N., Mackie, Meaghan, Jersie-Christensen, R. R., Olsen, Jesper Velgaard, Collins, Matthew James, Craig, O. E. & Rosenstock, E., 1 Dec 2018, In: Nature Communications. 9, 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  77. Published

    Preparation of bone powder for FTIR-ATR analysis: The particle size effect

    Kontopoulos, Ioannis, Presslee, S., Penkman, K. & Collins, Matthew James, 1 Nov 2018, In: Vibrational Spectroscopy. 99, p. 167-177

    Research output: Contribution to journalJournal articlepeer-review

  78. Published

    A guide to ancient protein studies

    Hendy, J., Welker, Frido, Demarchi, B., Speller, C., Warinner, C. & Collins, Matthew James, 2018, In: Nature Ecology & Evolution. 2, p. 791-799 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  79. Published

    Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

    Daly, K. G., Maisano Delser, P., Mullin, V. E., Scheu, A., Mattiangeli, V., Teasdale, M. D., Hare, A. J., Burger, J., Verdugo, M. P., Collins, M. J., Kehati, R., Erek, C. M., Bar-oz, G., Pompanon, F., Cumer, T., Çakırlar, C., Mohaseb, A. F., Decruyenaere, D., Davoudi, H., Çevik, Ö. & 20 others, Rollefson, G., Vigne, J., Khazaeli, R., Fathi, H., Doost, S. B., Rahimi Sorkhani, R., Vahdati, A. A., Sauer, E. W., Azizi Kharanaghi, H., Maziar, S., Gasparian, B., Pinhasi, R., Martin, L., Orton, D., Arbuckle, B. S., Benecke, N., Manica, A., Horwitz, L. K., Mashkour, M. & Bradley, D. G., 2018, In: Science. 361, 6397, p. 85-88

    Research output: Contribution to journalJournal articlepeer-review

  80. Published

    Collagen proteins exchange oxygen with demineralisation and gelatinisation reagents and also with atmospheric moisture

    von Holstein, I. C. C., von Tersch, M., Coutu, A. N., Penkman, K. E. H., Makarewicz, C. A. & Collins, Matthew James, 2018, In: Rapid Communications in Mass Spectrometry. 32, 6, p. 523-534 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  81. Published

    Comment on "Ecological niche of Neanderthals from Spy Cave revealed by nitrogen isotopes of individual amino acids in collagen" [J. Hum. Evol. 93 (2016) 82-90]

    O'Connell, T. C. & Collins, Matthew James, 2018, In: Journal of Human Evolution. 117, p. 53-55 3 p.

    Research output: Contribution to journalEditorialpeer-review

  82. Published

    Diagenesis of archaeological bone and tooth

    Kendall, C., Eriksen, Anne Marie Høier, Kontopoulos, I., Collins, Matthew James & Turner-Walker, G., 2018, In: Palaeogeography, Palaeoclimatology, Palaeoecology - An International Journal for the Geo-Sciences. 491, p. 21-37 17 p.

    Research output: Contribution to journalJournal articlepeer-review

  83. Published

    Exaggerated expectations in ancient starch research and the need for new taphonomic and authenticity criteria

    Mercader, J., Akeju, T., Brown, M., Bundala, M., Collins, Matthew James, Copeland, L., Crowther, A., Dunfield, P., Henry, A., Inwood, J., Itambu, M., Kim, J., Larter, S., Longo, L., Oldenburg, T., Patalano, R., Sammynaiken, R., Soto, M., Tyler, R. & Xhauflair, H., 2018, In: Facets. 3, p. 777-798 22 p.

    Research output: Contribution to journalJournal articlepeer-review

  84. Published

    Proteomic evidence of dietary sources in ancient dental calculus

    Hendy, J., Warinner, C., Bouwman, A., Collins, Matthew James, Fiddyment, S., Fischer, R., Hagan, R., Hofman, C. A., Holst, M., Chaves, E., Klaus, L., Larson, G., Mackie, Meaghan, McGrath, K., Mundorff, A. Z., Radini, A., Rao, H., Trachsel, C., Velsko, I. M. & Speller, C. F., 2018, In: Proceedings of the Royal Society B: Biological Sciences. 285, 1883, 977.

    Research output: Contribution to journalJournal articlepeer-review

  85. Published

    Species identification using ZooMS, with reference to the exploitation of animal resources in the medieval town of Odense

    Brandt, Luise Ørsted, Haase, K. & Collins, Matthew James, 2018, In: Danish Journal of Archaeology. 7, 2, p. 139-153

    Research output: Contribution to journalJournal articlepeer-review

  86. Published
  87. 2017
  88. Published

    The dental calculus metabolome in modern and historic samples

    Velsko, I. M., Overmyer, K. A., Speller, C., Klaus, L., Collins, Matthew James, Loe, L., Frantz, L. A. F., Sankaranarayanan, K., Lewis, C. M., Martinez, J. B. R., Chaves, E., Coon, J. J., Larson, G. & Warinner, C., Nov 2017, In: Metabolomics. 13, 11, 17 p., 134.

    Research output: Contribution to journalJournal articlepeer-review

  89. Published

    The York Gospels: a 1000-year biological palimpsest

    Teasdale, M. D., Fiddyment, S., Vnouček, J., Mattiangeli, V., Speller, C., Binois, A., Carver, M., Dand, C., Newfield, T. P., Webb, C. C., Bradley, D. G. & Collins, Matthew James, 25 Oct 2017, In: Royal Society Open Science. 4, 10, 11 p., 170988.

    Research output: Contribution to journalJournal articlepeer-review

  90. Published

    Preservation of the metaproteome: variability of protein preservation in ancient dental calculus

    Mackie, Meaghan, Hendy, J., Ramsøe, Abigail Daisy, Sperduti, A., Holst, M., Collins, Matthew James & Speller, C. F., 11 Aug 2017, In: STAR: Science & Technology of Archaeological Research. 3, 1, p. 74-86 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  91. Published

    New criteria for the molecular identification of cereal grains associated with archaeological artefacts

    Colonese, A. C., Hendy, J., Lucquin, A., Speller, C. F., Collins, Matthew James, Carrer, F., Gubler, R., Kühn, M., Fischer, R. & Craig, O. E., 26 Jul 2017, In: Scientific Reports. 7, 7 p., 6633.

    Research output: Contribution to journalJournal articlepeer-review

  92. Multiple Microanalyses of a Sample from the Vinland Map

    Sommer, D. V. P., Mühlen Axelsson, K., Collins, Matthew James, Fiddyment, S., Bredal-Jørgensen, J., Simonsen, K. P., Lauridsen, C. B. & Larsen, R., Apr 2017, In: Archaeometry. 59, 2, p. 287-301

    Research output: Contribution to journalJournal articlepeer-review

  93. Variations in glutamine deamidation for a Châtelperronian bone assemblage as measured by peptide mass fingerprinting of collagen

    Welker, Frido, Soressi, M. A., Roussel, M., van Riemsdijk, I., Hublin, J. & Collins, Matthew James, 4 Jan 2017, In: STAR: Science & Technology of Archaeological Research. 3, 1, p. 15-27 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  94. Aspartic acid racemization: Applications to forensic and archaeological age estimation

    Griffin, R. C. & Collins, Matthew James, 1 Jan 2017, Mechanisms Linking Aging, Diseases and Biological Age Estimation. Zapico, S. C. (ed.). CRC Press, p. 47-56 10 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  95. Published

    The identification of archaeological eggshell using peptide markers

    Presslee, S., Wilson, J., Woolley, J., Best, J., Russell, D., Radini, A., Fischer, R., Kessler, B., Boano, R., Collins, Matthew James & Demarchi, B., 2017, In: STAR: Science & Technology of Archaeological Research. 3, 1, p. 89-99 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  96. 2016
  97. A mass spectrometry method for the determination of the species of origin of gelatine in foods and pharmaceutical products

    Grundy, H. H., Reece, P., Buckley, M., Solazzo, C. M., Dowle, A. A., Ashford, D., Charlton, A. J., Wadsley, M. K. & Collins, Matthew James, 2016, In: Food Chemistry. 190, p. 276-284 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  98. Barcoding the largest animals on Earth: ongoing challenges and molecular solutions in the taxonomic identification of ancient cetaceans

    Speller, C., Van Den Hurk, Y., Charpentier, A., Rodrigues, A., Gardeisen, A., Wilkens, B., McGrath, K., Rowsell, K., Spindler, L., Collins, Matthew James & Hofreiter, M., 2016, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 371, 1702, 11 p., 20150332.

    Research output: Contribution to journalReviewpeer-review

  99. Finding Britain's last hunter-gatherers: a new biomolecular approach to ‘unidentifiable’ bone fragments utilising bone collagen

    Charlton, S., Alexander, M., Collins, Matthew James, Milner, N., Mellars, P., O'Connell, T. C., Stevens, R. E. & Craig, O. E., 2016, In: Journal of Archaeological Science. 73, p. 55-61 7 p.

    Research output: Contribution to journalJournal articlepeer-review

  100. Genomic signals of migration and continuity in Britain before the Anglo-Saxons

    Martiniano, R., Caffell, A., Holst, M., Hunter-Mann, K., Montgomery, J., Müldner, G., McLaughlin, R. L., Teasdale, M. D., Van Rheenen, W., Veldink, J. H., van den Berg, L. H., Hardiman, O., Carroll, M., Roskams, S., Oxley, J., Morgan, C., Thomas, M. G., Barnes, I., McDonnell, C., Collins, M. J. & 1 others, Bradley, D. G., 2016, In: Nature Communications. 7, 8 p., 10326.

    Research output: Contribution to journalJournal articlepeer-review

  101. Mapping the Elephants of the 19th Century East African Ivory Trade with a Multi-Isotope Approach

    Coutu, A. N., Lee-Thorp, J., Collins, Matthew James & Lane, P. J., 2016, In: PLoS ONE. 11, 10, 23 p., e0163606.

    Research output: Contribution to journalJournal articlepeer-review

  102. Published

    Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne

    Welker, Frido, Hajdinjak, M., Talamo, S., Jaouen, K., Dannemann, M., David, F., Julien, M., Meyer, M., Kelso, J., Barnes, I., Brace, S., Kamminga, P., Fischer, R., Kessler, B. M., Stewart, J. R., Pääbo, S., Collins, Matthew James & Hublin, J., 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 40, p. 11162-11167 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  103. Poor preservation of antibodies in archaeological human bone and dentine

    Kendall, R., Hendy, J., Collins, Matthew James, Millard, A. R. & Gowland, R. L., 2016, In: Science and Technology of Archaeological Research. 2, 1, p. 15-24 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  104. Published

    Protein sequences bound to mineral surfaces persist into deep time

    Demarchi, B., Hall, S., Roncal-Herrero, T., Freeman, C. L., Woolley, J., Crisp, M. K., Wilson, J., Fotakis, A. K., Fischer, R., Kessler, B. M., Jersie-Christensen, R. R., Olsen, J. V., Haile, J., Thomas, J., Marean, C. W., Parkington, J., Presslee, S., Lee-Thorp, J., Ditchfield, P., Hamilton, J. F. & 16 others, Ward, M. W., Wang, C. M., Shaw, M. D., Harrison, T., Domínguez-Rodrigo, M., MacPhee, R. D. E., Kwekason, A., Ecker, M., Kolska Horwitz, L., Chazan, M., Kröger, R., Thomas-Oates, J., Harding, J. H., Cappellini, Enrico, Penkman, K. & Collins, Matthew James, 2016, In: eLife. 5, 50 p., e17092.

    Research output: Contribution to journalJournal articlepeer-review

  105. Provenancing archaeological wool textiles from medieval northern Europe by light stable isotope analysis (δ13C, δ15N, δ2H)

    Von Holstein, I. C. C., Rogers, P. W., Craig, O. E., Penkman, K. E. H., Newton, J. & Collins, Matthew James, 2016, In: PLoS ONE. 11, 10, 27 p., e0162330.

    Research output: Contribution to journalJournal articlepeer-review

  106. Technological Analysis of the World's Earliest Shamanic Costume: A Multi-Scalar, Experimental Study of a Red Deer Headdress from the Early Holocene Site of Star Carr, North Yorkshire, UK

    Little, A., Elliott, B., Conneller, C., Pomstra, D., Evans, A. A., Fitton, L. C., Holland, A., Davis, R., Kershaw, R., O'Connor, S., O'Connor, T., Sparrow, T., Wilson, A. S., Jordan, P., Collins, M. J., Colonese, A. C., Craig, O. E., Knight, R., Lucquin, A. J. A., Taylor, B. & 1 others, Milner, N., 2016, In: PLoS ONE. 11, 4, 10 p., e0152136.

    Research output: Contribution to journalJournal articlepeer-review

  107. The challenge of identifying tuberculosis proteins in archaeological tissues

    Hendy, J., Collins, Matthew James, Teoh, K. Y., Ashford, D. A., Thomas-Oates, J., Donoghue, H. D., Pap, I., Minnikin, D. E., Spigelman, M. & Buckley, M., 2016, In: Journal of Archaeological Science. 66, p. 146-153 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  108. The effects of demineralisation and sampling point variability on the measurement of glutamine deamidation in type I collagen extracted from bone

    Simpson, J. P., Penkman, K. E. H., Demarchi, B., Koon, H., Collins, Matthew James, Thomas-Oates, J., Shapiro, B., Stark, M. & Wilson, J., 2016, In: Journal of Archaeological Science. 69, p. 29-38 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  109. Using combined biomolecular methods to explore whale exploitation and social aggregation in hunter-gatherer-fisher society in Tierra del Fuego

    Evans, S., Godino, I. B. I., Álvarez, M., Rowsell, K., Collier, P., de Goodall, R. N. P., Mulville, J., Lacrouts, A., Collins, Matthew James & Speller, C., 2016, In: Journal of Archaeological Science: Reports. 6, p. 757-767 11 p.

    Research output: Contribution to journalJournal articlepeer-review

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