Mads Nielsen

Mads Nielsen

Professor


  1. Published

    A Computer-based Measure Using Normalized Heights Predicts Vertebral  Fracture Independent of BMD in Post-menopausal Women

    A. Ghosh, de Bruijne, Marleen, C. Pettersen, M. A. Karsdal, D. J. Leeming, C. Christiansen, P. & Nielsen, Mads, 2008, In: Journal of Bone and Mineral Research. suppl. S, p. S333 1 p.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  2. Published

    The value of hippocampal volume, shape, and texture for 11-year prediction of dementia: a population-based study

    Achterberg, H. C., Sørensen, L., Wolters, F. J., Niessen, W. J., Vernooij, M. W., Ikram, M. A., Nielsen, Mads & de Bruijne, Marleen, 2019, In: Neurobiology of Aging. 81, p. 58-66

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Markov random fields on triangle meshes

    Andersen, V., Aanæs, H., Bærentzen, J. A. & Nielsen, Mads, 2010, WSCG 2010: communication papers proceedings . Skala, V. (ed.). Vaclav Skala - Union Agency, p. 265-270 6 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  4. Published

    4D shape-preserving modelling of bone growth

    Andresen, P. R., Nielsen, Mads & Kreiborg, Sven, 1998, Medical Image Computing and Computer-Assisted Intervention - MICCAI’98: First International Conference Cambridge, MA, USA, October 11–13, 1998 Proceedings. Wells, W. M., Colchester, A. & Delp, S. (eds.). Springer, p. 710-719 10 p. (Lecture notes in computer science, Vol. 1496).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  5. Non-rigid registration by geometry-constrained diffusion

    Andresen, P. R. & Nielsen, Mads, 2001, In: Medical Image Analysis. 5, 2, p. 81-88 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Alzheimer's disease diagnostic performance of a multi-atlas hippocampal segmentation method using the harmonized hippocampal protocol

    Anker, C., Sørensen, L., Pai, A. S. U., Lyksborg, M., Lillholm, Martin, Conradsen, K., Larsen, R. & Nielsen, Mads, 2014. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  7. Published

    Automated hippocampal segmentation using new standardized manual segmentations from the harmonized hippocampal protocol

    Anker, C., Pai, A. S. U., Sørensen, L., Lyksborg, M., Conradsen, K., Larsen, R. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P33 1 p., IC-P-058.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  8. Published

    Automated hippocampal segmentation using new standardized manual segmentations from the harmonized hippocampal protocol

    Anker, C., Pai, A. S. U., Sørensen, L., Lyksborg, M., Conradsen, K., Larsen, R. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P415-P416 2 p., P1-288.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  9. Published

    A longitudinal follow-up of COPD disease progression in a large cohort of smokers screened for early lung cancer: CBQ study

    Ashraf, H., Edula, G., de Bruijne, Marleen, Nielsen, Mads, Dahlbäck, A. D. M. & Pedersen, J. H., 2009, In: American Journal of Respiratory and Critical Care Medicine. p. A1492 1 p.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  10. Published

    Abdominal aortic calcification quantified by the Morphological Atherosclerotic Calcification Distribution (MACD) index is associated with features of the metabolic syndrome

    Barascuk, N., Ganz, Melanie, Nielsen, Mads, Register, T. C., Rasmussen, L. M., A. Karsdal, M. & Christiansen, C., 2011, In: B M C Cardiovascular Disorders. 11, 9 p., 11.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    An anatomically oriented breast coordinate system for mammogram analysis

    Brandt, S., Karemore, G., Karssemeijer, N. & Nielsen, Mads, 2011, In: I E E E Transactions on Medical Imaging. 30, 10, p. 1841-1851 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Anatomy driven breast coordinate system for mammogram analysis

    Brandt, S. S., Karemore, G. R., Karssemeijer, N. & Nielsen, Mads, 2011. 2 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  13. Published

    Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge

    Bron, E. E., Smits, M., van der Flier, W. M., Vrenken, H., Barkhof, F., Scheltens, P., Papma, J. M., Steketee, R. M. E., Méndez Orellana, C., Meijboom, R., Pinto, M., Meireles, J. R., Garrett, C., Bastos-Leite, A. J., Abdulkadir, A., Ronneberger, O., Amoroso, N., Bellotti, R., Cárdenas-Peña, D., Álvarez-Meza, A. M. & 30 others, Dolph, C. V., Iftekharuddin, K. M., Eskildsen, S. F., Coupé, P., Fonov, V. S., Franke, K., Gaser, C., Ledig, C., Guerrero, R., Tong, T., Gray, K. R., Moradi, E., Tohka, J., Routier, A., Durrleman, S., Sarica, A., Di Fatta, G., Sensi, F., Chincarini, A., Smith, G. M., Stoyanov, Z. V., Sørensen, L. E. B. L., Nielsen, Mads, Tangaro, S., Inglese, P., Wachinger, C., Reuter, M., van Swieten, J. C., Niessen, W. J. & Klein, S., 2015, In: NeuroImage. 111, p. 562-579 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics: First International Workshop, GRAIL 2017, 6th International Workshop, MFCA 2017, and Third International Workshop, MICGen 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings

    Cardoso, M. J. (ed.), Arbel, T. (ed.), Ferrante, E. (ed.), Pennec, X. (ed.), Dalca, A. V., Parisot, S. (ed.), Joshi, S. (ed.), Batmanghelich, N. K. (ed.), Sotiras, A. (ed.), Nielsen, Mads (ed.), Sabuncu, M. R. (ed.), Fletcher, T. (ed.), Shen, L. (ed.), Durrleman, S. (ed.) & Sommer, Stefan Horst (ed.), 2017, Springer. 248 p. (Lecture notes in computer science, Vol. 10551).

    Research output: Book/ReportAnthologyResearchpeer-review

  15. Published

    Towards exaggerated emphysema stereotypes

    Chen, C., Sørensen, L., Lauze, Francois Bernard, Igel, Christian, Loog, M., Feragen, A., de Bruijne, Marleen & Nielsen, Mads, 2012, Medical Imaging 2012: Computer-Aided Diagnosis. van Ginneken, B. & Novak, C. L. (eds.). SPIE - International Society for Optical Engineering, 13 p. 83150Q. (Proceedings of S P I E - International Society for Optical Engineering, Vol. 7964). (Progress in Biomedical Optics and Imaging; No. 31, Vol. 13).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  16. Published

    Novel classification using adaptive metric k-NN

    Chen, C., Chernoff, K., Karemore, G., Lo, P. C. P., Nielsen, Mads & Lauze, Francois Bernard, 2011. 2 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  17. Published

    Breast tissue segmentation from x-ray radiographs

    Chen, C., Nielsen, Mads, Karssemeijer, N. & Brandt, S. S., 2014, In: Physics in Medicine and Biology. 59, 10, p. 2445-2456 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Towards exaggerated image stereotypes

    Chen, C., Lauze, Francois Bernard, Igel, Christian, Feragen, A., Loog, M. & Nielsen, Mads, 2011, Proceedings of The First Asian Conference on Pattern Recognition 2011, . p. 422-426 5 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  19. Published

    Classification in medical image analysis using adaptive metric k-NN

    Chen, C., Chernoff, K., Karemore, G., Lo, P. C. P., Nielsen, Mads & Lauze, Francois Bernard, 2010, Medical Imaging 2010: image processing. Dawant, B. M. & Haynor, D. R. (eds.). SPIE - International Society for Optical Engineering, 9 p. 76230S. (Progress in Biomedical Optics and Imaging; No. 33, Vol. 11).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  20. Published

    Weighting of the k-Nearest-Neighbors

    Chernoff, K. & Nielsen, Mads, 2010, 2010 20th International Conference on Pattern Recognition (ICPR). IEEE, p. 666-669 4 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  21. Published

    Metric learning by directly minimizing the k-NN training error

    Chernoff, K., Loog, M. & Nielsen, Mads, 2012, 2012 21st International Conference on Pattern Recognition (ICPR). IEEE, p. 1265-1268 4 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  22. Published

    Two dimensional shape representation manipulation method for improving general procrustes alignment process, involves relating probable relative depth of landmark in three dimensional shape of body part

    Chernoff, K., Nielsen, Mads & Lillholm, Martin, 2010, IPC No. G06T-007/00, Patent No. WO2010142595-A1, 16 Dec 2010, Priority date 11 Jun 2009, Priority No. US268370

    Research output: Patent

  23. Published

    Mammographic Texture Resemblance generalizes as an independent risk factor of breast cancer

    Chernoff, K., Christopher, S. G., Karemore, G., Karssemeijer, N., Nielsen, Mads & Vachon, C. M., 2011.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  24. Published

    Morphological Atherosclerosis Calcification Distribution (MACD) Index is a Strong Predictor of Cardio-Vascular Death and Include Predictive Power of BMD

    Christiansen, C., Karsdal, M., Ganz, Melanie, Dam, E. & Nielsen, Mads, 2008. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  25. Published

    Automated Quantification of the Morphological Atherosclerotic Calcification Distribution on X-Rays Is a Strong Predictor of Mortality in Postmenopausal Women

    Christiansen, C., Karsdal, M., Lauze, Francois Bernard, Dam, E., Ganz, Melanie, de Bruijne, Marleen, Sørensen, M., Barascuk, N. & Nielsen, Mads, 2008, In: Arteriosclerosis, Thrombosis, and Vascular Biology. 6, p. e48-e48 1 p.

    Research output: Contribution to journalConference abstract in journalResearchpeer-review

  26. Quantizing calcification in the lumbar aorta on 2-D lateral X-ray images

    Conrad-Hansen, L. A., de Bruijne, M., Lauze, F., Tanko, L. B. & Nielsen, Mads, 2005, Computer Vision for Biomedical Image Applications. Springer Science+Business Media, p. 409-418 10 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  27. A pixelwise inpainting-based refinement scheme for quantizing calcification in the lumbar aorta on 2D lateral x-ray images

    Conrad-Hansen, L. A., de Bruijne, M., Lauze, F., Tanko, L. B. & Nielsen, Mads, 2006, Medical Imaging. p. 61441F-61441F

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  28. Published

    Method of deriving a quantitative measure of a degree of calcification of an aorta

    Conrad-Hansen, L. A., De Bruijne, M., Lauze, F. B., Christiansen, C. & Nielsen, Mads, 1 Jul 2009, Google Patents.

    Research output: Other contributionResearch

  29. Prediction of the location of the lumbar aorta using the first four lumbar vertebrae as a predictor

    Conrad-Hansen, L. A., Raundahl, J., Tankó, L. B. & Nielsen, Mads, 2004.

    Research output: Contribution to conferencePosterResearch

  30. Published

    Quantifying calcification in the lumbar aorta on X-ray images

    Conrad-Hansen, L. A., de Bruijne, Marleen, Lauze, F. B., Tankó, L. B., Pettersen, P. C., He, Q., Chen, J., Christiansen, C. & Nielsen, Mads, 2007, Medical Image Computing and Computer-Assisted Intervention: 10th International conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part II. Ayache, N., Ourselin, S. & Maeder, A. (eds.). Springer, p. 352-359 (Lecture notes in computer science; No. 4792).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  31. Published

    Semi-automatic detection of calcifications using nonlinear stretching on X-ray images

    Conrad-Hansen, L. A., de Bruijne, Marleen, Nielsen, Mads & Petrou, M., 2007, Medical Imaging 2007: Computer-aided diagnosis, 20-22 February, 2007, San Diego, California, USA. Giger, M. L. & Karssemeijer, N. (eds.). SPIE, 7 p. (Proceedings of SPIE; No. 6514).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  32. Published

    Maximum a posteriori estimation of linear shape variation with application to vertebra and cartilage modeling

    Crimi, A., Lillholm, Martin, Nielsen, Mads, Ghosh, A., de Bruijne, Marleen, Dam, E. B. & Sporring, Jon, 2011, In: IEEE Transactions on Medical Imaging. 30, 8, p. 1514-1526 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Prior knowledge regularization in statistical medical image tasks

    Crimi, A., Sporring, Jon, de Bruijne, Marleen, Lillholm, Martin & Nielsen, Mads, 2009, Proceedings of the MICCAI Workshop on Probabilistic Models for Medical Image Analysis. 12 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  34. Published

    Bayes estimation of shape model with application to vertebrae boundaries

    Crimi, A., Ghosh, A., Sporring, Jon & Nielsen, Mads, 2009, Medical Imaging 2009: Image Processing (Proceedings Volume). Vol. 7259. 8 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  35. Published

    Shape-based assessment of vertebral fracture risk in postmenopausal women using discriminative shape alignment

    Crimi, A., Loog, M., de Bruijne, Marleen, Nielsen, Mads & Lillholm, Martin, 2012, In: Academic Radiology. 19, 4, p. 446-454 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Field of Particle Filters Image Inpainting

    Cuzol, A., Steenstrup Pedersen, Kim & Nielsen, Mads, 2008, In: Journal of Mathematical Imaging and Vision. 31, 2-3, p. 147-156 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Non-linear diffusion for interactive multi-scale watershed segmentation

    Dam, E. & Nielsen, Mads, 2000, Medical Image Computing and Computer-Assisted Intervention--MICCAI 2000. Springer Science+Business Media, p. 216-225 10 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  38. Published

    Fully automatic cartilage morphometry for knee MRI from the OAI

    Dam, E., Marques, J., Zaim, S., Fuerst, T., Genant, H., Lillholm, Martin & Nielsen, Mads, 2012. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  39. Exploring Non-linear Difusion: The Difusion Echo

    Dam, E. & Nielsen, Mads, 2006, In: Scale-Space and Morphology in Computer Vision: Third International Conference, Scale-Space 2001 Vancouver, Canada, July 7--8, 2001 Proceedings. p. 264-272 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Cartilage curvature

    Dam, E. B., Folkesson, J., Petterson, P., Olsen, O. F., Nielsen, Mads & Christiansen, C., 1 Sep 2006

    Research output: Patent

  41. Published

    Prognostic osteoarthritis biomarkers

    Dam, E. B., Loog, M., Karsdal, M., Nielsen, Mads & Christiansen, C., 1 May 2009, Google Patents.

    Research output: Other contributionResearch

  42. Published

    Three-dimensional scan data analysis method for diagnosis of joint pathology, involves determining measure of three-dimensional local curvature within load bearing area of cartilage, at scale arranged to result in specific measure

    Dam, E. B., Folkesson, J. M., Pettersen, P., Olsen, O. F., Nielsen, Mads & Christiansen, C., 2007, IPC No. G06T-007/00, Patent No. WO2007048463-A1, 3 May 2007, Priority date 24 Oct 2005, Priority No. GB021640

    Research output: Patent

  43. Approximating Non-linear Diffusion

    Dam, E. B., Olsen, O. F. & Nielsen, Mads, 2003, Scale Space Methods in Computer Vision: 4th International Conference, Scale Space 2003 Isle of Skye, UK, June 10–12, 2003 Proceedings. <Forlag uden navn>, p. 117-131 (Lecture notes in computer science, Vol. 2695/2003).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  44. Published

    Three dimensional image data analysis method for diagnosis and prognosis of e.g. osteoarthritis, involves comparing measured value representative of homogeneity of medial area with previously obtained values of healthy joints

    Dam, E. B., Qazi, A. A., Karsdal, M., Petterson, P. C., Nielsen, Mads & Christiansen, C., 2008, IPC No. G06T-007/00, Patent No. WO2008034845-A2 , 27 Mar 2008, Priority date 19 Sep 2006, Priority No. GB018417

    Research output: Patent

  45. Published

    Method for identifying region of interest (ROI) in human organ for performing e.g. knee cartilage quantification, involves calculating weight of feature of image in map for minimizing sample size needed to discriminate between groups

    Dam, E. B., Nielsen, Mads, Qazi, A. A., Lillholm, Martin & Jørgensen, D. R., 2010, IPC No. G06K-009/00, Patent No. US2010232671-A1, 16 Sep 2010, Priority date 17 Dec 2008, Priority No. US203094P

    Research output: Patent

  46. Published

    Identification of progressors in osteoarthritis by combining biochemical and MRI based markers.

    Dam, Erik Bjørnager, Loog, M., Christiansen, C., Byrjalsen, I., Folkesson, J. M., Nielsen, Mads, Qazi, A. A., Pettersen, P., Garnero, P. & Karsdal, M. A., 24 Jul 2009, In: Arthritis Research & Therapy. 11, 4, p. 1-11

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Automatic segmentation of high-and low-field knee MRIs using knee image quantification with data from the osteoarthritis initiative

    Dam, Erik Bjørnager, Lillholm, Martin, Marques, J. & Nielsen, Mads, 2015, In: SPIE Journal of Medical Imaging. 2, 2, 13 p., 024001.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Multi-object segmentation using shape particles

    De Bruijne, M. & Nielsen, Mads, 2005, Multi-object segmentation using shape particles. p. 59-127 69 p. (Information Processing in Medical Imaging).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  49. Shape particle filtering for image segmentation

    De Bruijne, M. & Nielsen, Mads, 2004, In: Medical Image Computing and Computer-Assisted Intervention--MICCAI 2004. p. 168-175 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Quantitative vertebral morphometry using neighbor-conditional shape models

    De Bruijne, M., Lund, M. T., Tankó, L. B., Pettersen, P. P. & Nielsen, Mads, 2006, Medical Image Computing and Computer-Assisted Intervention--MICCAI 2006. Springer Science+Business Media, p. 1-8 8 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  51. Published

    Measurement challenge: protocol for international case–control comparison of mammographic measures that predict breast cancer risk

    Dench, E., Bond-smith, D., Darcey, E., Lee, G., Aung, Y. K., Chan, A., Cuzick, J., Ding, Z. Y., Evans, C. F., Harvey, J., Highnam, R., Hsieh, M., Kontos, D., Li, S., Mariapun, S., Nickson, C., Nguyen, T. L., Pertuz, S., Procopio, P., Rajaram, N. & 12 others, Repich, K., Tan, M., Teo, S., Trinh, N. H., Ursin, G., Wang, C., Dos-santos-silva, I., Mccormack, V., Nielsen, Mads, Shepherd, J., Hopper, J. L. & Stone, J., 2019, In: BMJ Open. 9, 12, p. 1-6 e031041.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Kunstig intelligens til cancerdiagnostik i brystkræftscreening

    Elhakim, M. T., Graumann, O., Brønsro Larsen, L., Nielsen, Mads & Rasmussen, B. S., 2020, In: Ugeskrift for Laeger. 182, 16, p. 1488-1492 V06200423.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    Brain region's relative proximity as marker for Alzheimer's disease based on structural MRI

    Erleben, L. L., Sørensen, L. E., Pai, A. S. U., Dam, Erik Bjørnager, Nielsen, Mads & Initiative, A. D. N., 2014, In: BMC Medical Imaging. 14, 1, 12 p., 21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    Morphometric connectivity analysis to distinguish normal, mild cognitive impaired, and Alzheimer subjects based on brain MRI

    Erleben, L. L., Sørensen, L., Mysling, P., Pai, A. S. U., Dam, E. B. & Nielsen, Mads, 2013, Medical Imaging 2013: image processing . Ourselin, S. & Haynor, D. R. (eds.). SPIE - International Society for Optical Engineering, 6 p. 866926. (Progress in Biomedical Optics and Imaging; No. 36, Vol. 14).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  55. Published

    Growth patterns of abdominal atherosclerotic calcified deposits from lumbar lateral X-rays

    Erleben, L. L., Ganz, Melanie, Barascuk, N., Dam, E. B. & Nielsen, Mads, 2010, In: International Journal of Cardiovascular Imaging. 26, 7, p. 751-761 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Special Issue on the Second International Conference on Scale Space Theory in Computer Vision: Guest Editors' Comments

    Faugeras, O., Nielsen, Mads, Perona, P., Romeny, B. T. H. & Sapiro, G., 2000, In: Journal of Visual Communication and Image Representation. 11, 2, p. 95 1 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    Fundamental geodesic deformations in spaces of treelike shapes

    Feragen, A., Lauze, Francois Bernard & Nielsen, Mads, 2010, 20th International Conference on Pattern Recogniction - ICPR 2010. IEEE, p. 2089-2093 5 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  58. Published

    Information Processing in Medical Imaging: 27th International Conference, IPMI 2021, Virtual Event, June 28–June 30, 2021, Proceedings

    Feragen, A. (ed.), Sommer, Stefan Horst (ed.), Schnabel, J. (ed.) & Nielsen, Mads (ed.), 2021, Springer. 782 p. (Lecture Notes in Computer Science, Vol. 12729).

    Research output: Book/ReportAnthologyResearchpeer-review

  59. Published

    Geometries on spaces of treelike shapes

    Feragen, A., Lauze, Francois Bernard, Lo, P. C. P., de Bruijne, Marleen & Nielsen, Mads, 2011, Computer Vision – ACCV 2010 : 10th Asian Conference on Computer Vision, Queenstown, New Zealand, November 8-12, 2010, Revised Selected Papers, Part II. Kimmel, R., Klette, R. & Sugimoto, A. (eds.). Springer, p. 160-173 14 p. (Lecture notes in computer science, Vol. 6493).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  60. Published

    Means in spaces of tree-like shapes

    Feragen, A., Hauberg, S., Nielsen, Mads & Lauze, Francois Bernard, 2011, 2011 IEEE International Conference on Computer Vision (ICCV). IEEE, p. 739-746 8 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  61. Published

    A geometric framework for statistics on trees

    Feragen, A., Nielsen, Mads, Hauberg, S., Lo, P. C. P., de Bruijne, Marleen & Lauze, Francois Bernard, 2011, Department of Computer Science, University of Copenhagen. 47 p. (Koebenhavns Universitet. Datalogisk Institut. Rapport; No. 11/02).

    Research output: Book/ReportReportResearch

  62. Published

    An airway tree-shape model for geodesic airway branch labeling

    Feragen, A., Lo, P. C. P., Gorbunova, V., Nielsen, Mads, Dirksen, A., Reinhardt, J. M., Lauze, Francois Bernard & de Bruijne, Marleen, 2011, MFCA 2011: 3rd MICCAI Workshop on Mathematical Foundations of Computational Anatomy. Pennec, X., Joshi, S. & Nielsen, M. (eds.). p. 123-134 12 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  63. Published

    Toward a theory of statistical tree-shape analysis

    Feragen, A., Lo, P. C. P., de Bruijne, Marleen, Nielsen, Mads & Lauze, Francois Bernard, 2013, In: I E E E Transactions on Pattern Analysis and Machine Intelligence. 35, 8, p. 2008-2021 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    Geometry and statistics: manifolds and stratified spaces

    Feragen, A., Nielsen, Mads, Jensen, E. B. V., Plessis, A. D. & Lauze, Francois Bernard, 2014, In: Journal of Mathematical Imaging and Vision. 50, 1, p. 1-4 4 p.

    Research output: Contribution to journalEditorialResearch

  65. Published

    Deep Learning-Based Assessment of Cerebral Microbleeds in COVID-19

    Ferrer, N. R., Vendela Sagar, M., Klein, Kiril Vadimovic, Kruuse, Christina Rostrup, Nielsen, Mads & Mehdipour Ghazi, Mostafa, 2023, 2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023. IEEE Computer Society Press, p. 1-4 4 p. (Proceedings - International Symposium on Biomedical Imaging, Vol. 2023-April).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  66. The intrinsic structure of optic flow incorporating measurement duality

    Florack, L., Niessen, W. & Nielsen, Mads, 1998, In: International Journal of Computer Vision. 27, 3, p. 263-286 24 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Locating articular cartilage in MR images

    Folkesson, J., Dam, E., Pettersen, P., Olsen, O. F., Nielsen, Mads & Christiansen, C., 2005, Medical Imaging. p. 1484-1490 7 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  68. Published

    Nonrigid Object Segmentation and Occlusion Detection in Image Sequences

    Fundana, K., Overgaard, N., Heyden, A., Gustafsson, D. K. J. & Nielsen, Mads, 2008, VISAPP 2008: Proceedings of the Third International Conference on Computer Vision Theory and Applications, Funchal, Madeira, Portugal, January 22-25, 2008. Ranchordas, A. & Ara, H. (eds.). INSTICC - Institute for Systems and Technologies of Information, Control and Communications, Vol. 1. p. 211-218

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  69. Published

    Patch-based generative shape model and MDL model selection for statistical analysis of archipelagos

    Ganz, Melanie, Nielsen, Mads & Brandt, S., 2010, Machine Learning in Medical Imaging: First International Workshop, MLMI 2010, Held in Conjunction with MICCAI 2010, Beijing, China, September 20, 2010. Proceedings. Wang, F., Yan, P., Suzuki, K. & Shen, D. (eds.). Springer, p. 34-41 8 p. (Lecture notes in computer science, Vol. 6357).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  70. Published

    Dense Iterative Contextual Pixel Classification using Kriging

    Ganz, Melanie, Loog, M., Brandt, S. & Nielsen, Mads, 2009, IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, 2009. CVPR Workshops 2009. . p. 87-93 7 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  71. Published

    MACD - an imaging marker for cardiovascular disease

    Ganz, Melanie, de Bruijne, Marleen & Nielsen, Mads, 2010, Medical Imaging 2010: computer-aided diagnosis. Karssemeijer, N. & Summers, R. M. (eds.). SPIE - International Society for Optical Engineering, 9 p. 76240

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  72. Published

    BMD PREDICTION OF DEATH IS ENCAPSULATED BY THE MORPHOLOGICAL ATHEROSCLEROSIS CALCIFICATION DISTRIBUTION (MACD) INDEX

    Ganz, Melanie, Nielsen, Mads, Karsdal, M. & Christiansen, C., 2009, In: Bone. suppl. 2, p. S265 1 p.

    Research output: Contribution to journalConference abstract in journalResearch

  73. Published

    Distribution, size, and shape of abdominal aortic calcified deposits and their relationship to mortality in postmenopausal women

    Ganz, Melanie, de Bruijne, Marleen, Dam, E. B., Pettersen, P., Karsdal, M. A., Christiansen, C. & Nielsen, Mads, 2012, In: International Journal of Biomedical Imaging. 2012, 8 p., 459286.

    Research output: Contribution to journalJournal articleResearchpeer-review

  74. Published

    CARRNN: A Continuous Autoregressive Recurrent Neural Network for Deep Representation Learning From Sporadic Temporal Data

    Mehdipour Ghazi, Mostafa, Sørensen, L., Ourselin, S. & Nielsen, Mads, 2024, In: IEEE Transactions on Neural Networks and Learning Systems. 35, 1, p. 792-802

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    Estimating risk of future fracture or deformity of vertebrae of spine, by comparing processed data representing appearance of vertebra of spine with statistical model and deriving similarity between vertebra of spine and model

    Ghosh, A., Nielsen, Mads, Karsdal, M. A., Christiansen, C., de Bruijne, Marleen & Petterson, P., 2011, IPC No. G06T-007/00, Patent No. WO2009124995-A1, 15 Oct 2009, Priority date 10 Apr 2008, Priority No. GB006509

    Research output: Patent

  76. Published

    Weight preserving image registration for monitoring disease progression in lung CT.

    Gorbunova, V., Lo, P. C. P., Haseem, A., Dirksen, A., Nielsen, Mads & de Bruijne, Marleen, 2008, Mecical Image Computing and Computer-Assisted Intervention - MICCAI 2008: 11th International Conference, New York, NY, USA, September 6-10, 2008, proceedings, Part II. Metaxas, D., Axel, L., Fichtinger, G. & Szekely, G. (eds.). Springer, p. 863-871 8 p. (Lecture notes in computer science; No. 5242).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  77. Published

    Mass preserving image registration for lung CT

    Gorbunova, V., Sporring, Jon, Lo, P. C. P., Loeve, M., Tiddens, H. A., Nielsen, Mads, Dirksen, A. & de Bruijne, Marleen, 2012, In: Medical Image Analysis. 16, 4, p. 786-795 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  78. Published

    Mass Preserving Registration for lung CT

    Gorbunova, V., Lo, P. C. P., Loeve, M., Tiddens, H., Sporring, Jon, Nielsen, Mads & de Bruijne, Marleen, 2009, Proceedings of the SPIE: Medical Imaging 2009: Image Processing. Vol. 7259. 10 p. (Proceedings of the SPIE, Vol. 7259).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  79. Published

    Early detection of emphysema progression

    Gorbunova, V., Jacobs, S. S. A. M., Lo, P. C. P., Dirksen, A., Nielsen, Mads, Bab-Hadiashar, A. & de Bruijne, Marleen, 2010, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010: 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part II. Jiang, T., Navab, N., Pluim, J. P. W. & Viergever, M. A. (eds.). Springer, Vol. Part II. p. 193-200 8 p. (Lecture notes in computer science; No. 6362).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  80. Published

    Position paper on COVID-19 imaging and AI: From the clinical needs and technological challenges to initial AI solutions at the lab and national level towards a new era for AI in healthcare

    Greenspan, H., Estepar, R. S. J., Niessen, W. J., Siegel, E. & Nielsen, Mads, 2020, In: Medical Image Analysis. 66, 11 p., 101800.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Natural image profiles are most likely to be step edges

    Griffin, L. D., Lillholm, Martin & Nielsen, Mads, 2004, In: Vision Research. 44, 4, p. 407-421 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  82. Lesion-wise evaluation for effective performance monitoring of small object segmentation

    Groothuis, I., Sudre, C. H., Ingala, S., Barnes, J., Gispert, J. D., Sørensen, L., Pai, A., Nielsen, Mads, Ourselin, S., Cardoso, M. J., Barkhof, F. & Modat, M., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, p. 1-8 1159608. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE, Vol. 11596).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  83. Published

    A SVD Based Image Complexity Measure

    Gustafsson, D. K. J., Steenstrup Pedersen, Kim & Nielsen, Mads, 2009, VISAPP 2009: PROCEEDINGS OF THE FOURTH INTERNATIONAL CONFERENCE ON COMPUTER VISION THEORY AND APPLICATIONS. Vol. 2. p. 34-39 6 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  84. Published

    Geometric and Texture Inpainting by Gibbs Sampling

    Gustafsson, D. K. J., Steenstrup Pedersen, Kim & Nielsen, Mads, 2007, Proceedings SSBA 2007: Symposium on inage analysis, Linköping, March 14-14, 2007. Borga, M., Brun, A. & Felsberg, M. (eds.). Linköpings Universitet, 4 p. (Institutionen för medicinsk teknik, Universitetet i Linköping; No. LiU-IMT-R-0047).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  85. Published

    Variational Segmentation and Contour Matching of Non-Rigid Moving Object

    Gustafsson, D. K. J., Fundana, K., Overgaard, N., Heyden, A. & Nielsen, Mads, 2007. 12 p.

    Research output: Contribution to conferencePaperResearchpeer-review

  86. Published

    Image Inpainting by Cooling and Heating

    Gustafsson, D. K. J., Steenstrup Pedersen, Kim & Nielsen, Mads, 2007, Image Analysis: 15th Scandinavian Conference, SCIA 2007, Aalborg, Denmark, June 10-14, 2007. Springer, p. 591-600 10 p. (Lecture notes in computer science; No. 4522).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  87. Published

    Multi-Scale Natural Images: A database and some statistics

    Gustafsson, D. K. J., Steenstrup Pedersen, Kim & Nielsen, Mads, 2008, Proceedings of 16'th Danish Conference on Pattern Recognition and Image Analysis (DSAGM) 2008. Olsen, S. I. (ed.). Department of Computer Science, University of Copenhagen, 2 p. (DIKU Technical Report; No. 08-10).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearch

  88. Published

    On the Rate of Structural Change in Scale Spaces

    Gustafsson, D. K. J., Steenstrup Pedersen, Kim, Lauze, Francois Bernard & Nielsen, Mads, 2009, Proceedings of Scale Space and Variational Methods in Computer Vision (SSVM) 09. Springer, Vol. 5567. p. 832-843 11 p. (Lecture notes in computer science, Vol. 5567/209).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  89. Eye typing using markov and active appearance models

    Hansen, D. W., Hansen, J. P., Nielsen, Mads, Johansen, A. S. & Stegmann, M. B., 2002, Applications of Computer Vision, 2002.(WACV 2002). Proceedings. Sixth IEEE Workshop on. p. 132-136 5 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  90. Tracking Eyes Using Shape and Appearance.

    Hansen, D. W., Nielsen, Mads, Hansen, J. P., Johansen, A. S. & Stegmann, M. B., 2002, MVA. p. 201-204 4 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  91. Eye tracking off the shelf

    Hansen, D. W., MacKay, D. J., Hansen, J. P. & Nielsen, Mads, 2004, Proceedings of the 2004 symposium on Eye tracking research applications. p. 58-58 1 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  92. Published

    Extension of Plant Phenotypes by the Foliar Microbiome

    Hawkes, C. V., Kjøller, Rasmus, Raaijmakers, J. M., Riber, Leise, Christensen, Svend, Rasmussen, Simon, Christensen, Jan H., Dahl, A. B., Westergaard, Jesper Cairo, Nielsen, Mads, Brown-Guedira, G. & Hansen, Lars Hestbjerg, 2021, In: Annual Review of Plant Biology. 72, p. 823-846 24 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  93. Published

    Machine learning and deep learning applications in microbiome research

    Hernandez Medina, Ricardo, Kutuzova, Svetlana, Nielsen, Knud Nor, Johansen, Joachim, Hansen, Lars Hestbjerg, Nielsen, Mads & Rasmussen, Simon, 2022, In: ISME Communications. 2, 7 p., 98.

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Computer Vision - ECCV 2002: 7th European Conference on Computer Vision Copenhagen, Denmark, May 28–31, 2002 Proceedings, Part III

    Heyden, A. (ed.), Sparr, G. (ed.), Nielsen, Mads (ed.) & Johansen, P. (ed.), 2002, <Forlag uden navn>. (Lecture notes in computer science, Vol. 2352/2002).

    Research output: Book/ReportBookResearchpeer-review

  95. Computer Vision - ECCV 2002: 7th European Conference on Computer Vision Copenhagen, Denmark, May 28–31, 2002 Proceedings, Part I

    Heyden, A. (ed.), Sparr, G. (ed.), Nielsen, Mads (ed.) & Johansen, P. (ed.), 2002, Denmark. (Lecture notes in computer science, Vol. 2350/2002).

    Research output: Book/ReportBookResearchpeer-review

  96. Computer Vision - ECCV 2002: 7th European Conference on Computer Vision Copenhagen, Denmark, May 28–31, 2002 Proceedings, Part II

    Heyden, A. (ed.), Sparr, G. (ed.), Nielsen, Mads (ed.) & Johansen, P. (ed.), 2002, <Forlag uden navn>. (Lecture notes in computer science, Vol. 2351/2002).

    Research output: Book/ReportBookResearchpeer-review

  97. Computer Vision - ECCV 2002: 7th European Conference on Computer Vision Copenhagen, Denmark, May 28–31, 2002 Proceedings, Part IV

    Heyden, A. (ed.), Sparr, G. (ed.), Nielsen, Mads (ed.) & Johansen, P. (ed.), 2002, <Forlag uden navn>. (Lecture notes in computer science, Vol. 2353/2002).

    Research output: Book/ReportBookResearchpeer-review

  98. Published

    Multi-hypothesis Transform Domain Wyner-Ziv video coding including optical flow

    Huang, X., Rakêt, L. L., Luong, H. V., Nielsen, Mads, Lauze, Francois Bernard & Forchhammer, S., 2011, 2011 IEEE 13th International Workshop on Multimedia Signal Processing (MMSP). IEEE, 6 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  99. Published

    A Family of Principal Component Analyses for Dealing with Outliers

    Iglesias, J. E., de Bruijne, Marleen, Loog, M., Lauze, F. B. & Nielsen, Mads, 2007, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007: 10th International Conference, Brisbane, Australia, October 29- November 2, 2007, Proceedings, Part II. Ayache, N., Ourselin, S. & Maeder, A. (eds.). Springer, p. 178-185 (Lecture notes in computer science; No. 4792).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  100. Products of random matrices

    Jackson, A. D., Lautrup, B., Johansen, P. & Nielsen, Mads, 2002, In: arXiv preprint physics/0202037.

    Research output: Contribution to journalJournal articleResearchpeer-review

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